| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 6,898 | A→G | L354L (CTT→CTC) | yaaJ ← | putative transporter YaaJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 6,898 | 0 | A | G | 91.3% | 55.6 / ‑3.7 | 23 | L354L (CTT→CTC) | yaaJ | putative transporter YaaJ |
| Reads supporting (aligned to +/- strand): ref base A (2/0); new base G (14/7); total (16/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.74e-01 | |||||||||||
CCACAGGCGAGAGCAGTAAAATGGCGGTCAAATTGGTAATAGCCATGCAGGCCATTATGATATCTGCCAGTTGCCACATCAGCGGAAGGCTTAGCAAGGTGCCGCCGATGACCGTTGCGAAGGTGCAGATCCGCAAACACCAGATCGCTTTAGGGTTGTTCAGGCGTAAAAAGAAGAGATTGTTTTCGGCATAAATGTAGTTGGCAACGATGGAGCTGAAGGCAAACAGAATAACCACAAGGGTAACAAA‑CTCAGCACCCCAGGAACCCATTAGCACCCGCATCGCCTTCTGGATAAGCTGAATACCTTCC‑AGCGGCATGTAGGTTGTGCCGTTACCCGCCAGTAATATCAGCATGGCGCTTGCCGTACAGATGACCAGGGTGTCGATAAAAATGCCAATCATCTGGACAATCCCTTGCGCTGCCGGATGCGGAGGCCAGGACGCCGCTGCCGCTGCCGCGTTTGGCGTCGAACCCATTC > NC_000913/6660‑7139 | ccACAGGCGAGAGCAGTAAAATGGCGGTCAAAATGGTAATAGCCATTCAGGACATTATGAAATCTGCCAGGTGCCACATCAAAGGGAGACTTAGCAAGGTTCCGCCGATGACCGTTGCGACGGAGCAGAACCGCAAACACCAACTCGCTTTTGGGGTGTTCAGTCGAAAAAAGAAGAGATTGATTTCGGCGTTAATCTAGTTTGCGAAGATGAAGATGAAGGCAAACAAAATAACCCCGAGGGTAACAAA‑c > 2:49993/1‑251 (MQ=255) acaGGCGAGAGCAGTAAAATGGCGGTCAAATTGGTAATAGCCATGCAGGCCATTATGATATCTGCCAGTTGCCACATCAGCGGAAGACTTAGCAAGGTGCCGCCGATGACCGTTGCGAAGGTGCAGATCCGCAAACACCAGATCGCTTTAGGGTTGTTCAGGCGTAAAAAGAAGAGATTGTTTTCGGCGTAAATGTAGTTGGCAACGATGGAGCTGAAGGCAAACAGAATAACCACGAGGGTAACAAA‑CTc < 1:21518/251‑1 (MQ=255) gCGAGAGCTGTAAAATGGCGGTCAAATTGGTAATGGCCATGCAGGCCATTAGGATATCTGCCAGTTGCCACATCAGCGGAAGACGTAGCAAGGTGCCGCCGATGACCGTTGCGAATGTGCAGATCCGCAAACACCAGATCGCTTTAGGGTTGTTCAGGCGGAAAAAGAAGAGATTGTTTTCGGCGTAAATGTAGTTGGCAACGATGGAGCTGAAGGCAAACAGAATAACCACGAGGGTAACAAA‑CTCAGCa < 2:116872/251‑1 (MQ=255) gCGAGAGCAGTAAAATGGCGGTCAAATTGGTAATAGCCATGCAGGCCATTATGAGATCTGCCAGTTGCCACATCAGCGGAAGACTTAGCAAGGTGCCGCCGATGACCGTTGCGAAGGTGCAGATCCGCAAACACCAGATCGCTTTAGGGTTGTTCAGGCGTAAAAAGAAGAGATTGTTTTCGGCGTAAATGTAGTTGGCAACGATGGAGCTGAAGGCAAACAGAATAACCACGAGGGTAACAAA‑CTCAGCa < 1:83169/251‑1 (MQ=255) gTAAAATGGCTGGCAAATTTGGAATATCCTGGCAGGCCAGTATGATATCCGCGAGTTGCCACAGCAGCGGAAGACTTAGCAAGGTGCCGCCGATGACCGTTGCGAAGGTGCAGATCCGCAAACACCAGATCGCTTTAGGTGTGTGCAGGCGTAAAAAGAAGAGATTGCTGTCGGCGTAAATGTAGTTGGCAACGAGGGAGCTGAAGGCAGACATAATAACCACGAGGGTGACAAA‑ATCAGCAcctgaggaa < 2:162637/251‑8 (MQ=255) ggCGGTCAAATTGGTAATAGCCATGCAGGCCATTATGATATCTGCCAGTTGCCACATCAGCGGAAGACTTAGCAAGGTGCCGCCGATGACCGTTGCGAAGGTGCAGATCCGCAAACACCAGATCGCTTTAGGGTTGTTCAGGCGTAAAAAGAAGAGATTGTTTTCGGCGTAAATGTAGTTGGCAACGATGGAGCTGAAGGCAAACAGAATAACCACGAGGGTAACAAA‑CTCAGCACCCCAGGAACCCAtt > 1:240974/1‑250 (MQ=255) gCAGGCCATTATGATATCTGCCAGTTGCCACATCAGCGGAAGACTTAGCAAGGTGCCGCCGATGACCGTTGCGAAGGGGCAGATCCGCAAACACCAGATCGCTTTAGGGTTGTTCAGGCGTAAAAAGAAGAGATTGTTTTCGGCGTAAATGTAGTTGGCAACGATGGAGCTGAAGGCAAACAGAATAACCACGAGGGTAACAAA‑CTCAGCACCCCAGGAACCCATTAACACCCGCATCGCCTTCTGGATa < 1:365025/250‑1 (MQ=255) aGGCCATTATGATATCTGCCAGTTGCCACATCAGCGGAAGACTTAGCAAGGTGCCGCCGATGACCGTTGCGAAGGTGCAGATCCGCAAACACCAGATCGCTTTAGGGTTGTTCAGGCATAAAAAGAAGAGATTGTTTTCGGCGTAAATGTAGTTGGCAACGATGGAGCTGAAGGCAAACAGAATAACCACGAGGGTAACAAA‑CTCAGCACCCCAGGAACCCATTAACACCCGCATCGCCTTCTGGATAAGc > 1:2346/1‑251 (MQ=255) acaTCAGCGGAAGACTTAGCAAGGTGCCGCCGATGACCGTTGCGAAGGTGCAGATCCGCAAACACCAGATCGCTTTAGGGTTGTTCAGGCGTAAAAAGAAGAGATTGTTTTCGGCGTAAATGTAGTTGGCAACGATGGAGCTGAAGGCAAACAGAATAACCACGAGGGTAACAAA‑CTCAGCACCCCAGGAACCCATTAACACCCGCATCGCCTTCTGGATAAGCTGAATACCTTCC‑AGCGGCATGTAGGtt > 1:351439/1‑251 (MQ=255) aaGGTGCCGCCGATGACCGTTGCGAAGGTGCAGATCCGCAAACACCAGATCGCTTTAGGGTTGTTCAGGCGTAAAAAGAAGAGATTGTTTTCGGCGTAAATGTAGTTGGCAACGATGGAGCTGAAGGCAAACAGAATAACCACGAGGGTAACAAA‑CTCAGCACCCCAGGAACCCATTAACACCCGCATCGCCTTCTGGATAAGCTGAATACCTTCC‑AGCGGCATGTAGGTTGTGCCGTTACCCGCCAGTa > 1:105792/1‑250 (MQ=255) tCCGCAAACACAAGATCGCTTTAAGGGTGTTCAGGCGTAATATGAAGAGATTGTTTTCGGCGTAAATGTAGTTGGCAACGATGGAGCTGAAGGCAAACAGAATAACCACGAGGGTAACAAA‑CTCAGCACCCCAGGAACCAATTAAAACCCGCATCGCCTTCTGGATAAGCTGAATCCATTCC‑AGCGGCTTGTAGATTGTGCCGGTAAACGCCAGTAATATCAGCATGCCGCtgtacgtacagcagaccacg > 2:45075/1‑232 (MQ=255) gCTTTAGGGTTGTTCAGGCGTAAAAAGAAGAGATTGTTTTCGGCGTAAATGTAGTTGGCAACGATGGAGCTGAAGGCAAACAGAATAACCACGAGGGTAACAAA‑CTCAGCACCCCAGGAACCCATTAACACCCGCATCGCCTTCTGGATAAGCTGAATACCTTCC‑AGCGGCATGTAGGTTGTGCCGTTACCCGCCAGTAATATCAGCATGGCGCTTGCCGTACAGATGACCAGGGTGTCGATaaaacttcc > 1:61594/1‑246 (MQ=255) tCAGGCGTAAAAAGAAGAGATTGTTTTCGGCGTAAATGTAGTTGGCAACGATGGAGCTGAAGGCAAACAGAATAACCACGAGGGTAACAAA‑CTCAGCACCCCAGGAACCCATTAACACCCGCATCGCCTTCTGGATAAGCTGAATACCTTCC‑AGCGGCATGTAGGTTGTGCCGTTACCCGCCAGTAATATCAGCATGGCGCTTGCCGTACAGATGACCCGGGTGTCGATAAAAATGCCAATCATCTGGAc > 1:204960/1‑250 (MQ=255) aaaaaGAAGAGATTGTTTTCGGCGTAAATGTAGTTGGCAACGATGGAGCTGAAGGCAAACAGAATAACCACGAGGGTAACAAA‑CTCAGCACCCCAGGAACCCATTAACACCCGCATCGCCTTCTGGATAAGCTGAATACCTTCC‑AGCGGCATGTAGGTTGTGCCGTTACCCGCCAGTAATATc > 1:38202/1‑183 (MQ=255) aaaaGAAGAGATTGTTTTCGGCGTAAATGTAGTTGGCAACGATGGAGCTGAAGGCAAACAGAATAACCACGAGGGTAACAAA‑CTCAGCACCCCAGGAACCCATTAACACCCGCATCGCCTTCTGGATAAGCTGAATACCTTCC‑AGCGGCATGTAGGTTGTGCCGTTACCCGCCAGTAATATCAGCATGGCGCTTGCCGTACAGATGACCAGGGTGTCGATAAAAATGCCAATCATCTGGACAATCCCTTgc > 1:15113/1‑251 (MQ=255) gaagaGATTGTTTTCGGCGTAAATGTAGTTGGCAACGATGGAGCTGAAGGCAAACAGAATAACCACGAGGGTAACAAA‑CTCAGCACCCCAGGAACCCATTAACACCCGCATCGCCTTCTGGATAAGCTGAATACCTTCC‑AGCGGCATGTAGGTTGTGCCGTTACCCGCCAGTAATATCAGCATGGCGCt > 1:367614/1‑189 (MQ=255) aagaGATTGTGTTCGGCGTAAAGTTAGTTGGCAACGATGGAGCGAAAGGAAAAAAAAAAAACCAGGAGGATAAAAAA‑CCCAGCCCCCCAGAAACCCTTTAACCCCCGCTTCGCCTTCGGGAAAAGCTGAAT‑CCTTCCCAGGGGAATGTGGGTTGTGCCGTTACCCGCCAGTAATATCAGCATGGCGCTTGCCGTACAGATGACCAGGGTGTCGATAAAAATGCCAATCATCTGGACAATCCCTTGCGCTGc < 1:49993/251‑1 (MQ=255) tggtgcccggcgaataTGTATTTGACAACGATGGAGCAGAAGTAAAACAGAATAACCGCGAGG‑TAACAAAACACACCCCCCCAGGACCCAATAAACCCCCGCATCGCCTGCTGTATAAGCTAAATCCCTCCC‑AGCGGCATGGAGGTTGTGCCGTTCCCCGCCAGTAATATCAGCATGGCGCTTGCCGTACAGATGACCAGGGTGTCGATAAAAATGCCAATCATCTGGACAATCCCTTGCGCTGCCGGAt < 1:79035/235‑1 (MQ=255) ttttCGGCGTAAATGTAGTTGGCAACGATGGAGCTGAAGGCAAACAGAATAACCACGAGGGTAACAAA‑CTCAGCACCCCAGGAACCCATTAACACCCGCATCGCCTTCTGGATAAGCTGAATACCTTCC‑AGCGGCATGTAGGTTGTGCCGTTACCCGCCAGTAATATCAGCATGGCGCTTGCCGTACAGATGACCAGGGTGTCGATAAAAATGCCAATCATCTGGACAATCCCTTGCGCTGCCGGATGCgg > 1:205465/1‑251 (MQ=255) tttCGGCATAAATGTAGTTGGCAACGATGGAGCTGAAGGCAAACAGAATAACCACAAGGGTAACAAA‑CTCAGCACCCCAGGAACCCATTAGCACCCGCATCGCCTTCTGGATAAGCTGAATACCTTCC‑AGCGGCATGTAGGTTGTGCCGTTACCCGCCAGTAATATCAGCATGGCGCTTGCCGTACAGATGACCAGGGTGTCGCTAAAAATGCCAATCATCTGGACAATCCCTTGCTCTGCCGGATGCgg > 1:78388/1‑250 (MQ=255) tttCGGCATAAATGTAGTTGGCAACGATGGAGCTGAAGGCAAACAGAATAACCACAAGGGTAACAAA‑CTCAGCACCCCAGGAACCCATTAGCACCCGCATCGCCTTCTGGATAAGCTGAATACCTTCC‑AGCGGCATGTAGGTTGTGCCGTTACCCGCCAGTAATATCAGCATGGCGCTT‑CCGTACAGATTACCAGGGTGTCGATAAAAATGCCAATCATCTGGACAATCCCTTGCGCTGCCGGATGCgg > 1:218889/1‑249 (MQ=255) cTGAAGGCAAACAGAATAACCACGAGGGTAACAAA‑CTCAGCACCCCAGGAACCCATTAACACCCGCATCGCCATCTGGATCAGCTGAATACCTTCC‑AGCGGCATGTAGGGTGTGCCGTTACCCGCCAGTAATATCAGCATGGCGCTTGCCGTACAGATGACCAGGGTGTCGATAAAAATGCCAATCATCTGGACAATCCCTTGCGCTGCCGGATGCGGAGGCCAGGACGCCGCTGCCGCTGCCGCGTTTgg > 1:174866/1‑251 (MQ=255) aaTAACCACGAGGGGAACAAA‑ATCAGCGCCCCAGGAACCCATAAACACACGCATAGCCTTCTGGATAAGCTGAATACCTTCC‑AGCGGCATGTAAGGTGTGCCATTACCCACAAGTAATCTCAGCATGGCGCTTGCCGGACAGATGACCAGGGTGTCGGAAAAAATGCCAATAATCTGGACAAACCCGTGGGCTTCCGGATGAGGGGGACAGGCCGCCGCTACCGCTGCCCGGTTTGGAGGCGACCCCAtac > 2:306144/1‑249 (MQ=255) | CCACAGGCGAGAGCAGTAAAATGGCGGTCAAATTGGTAATAGCCATGCAGGCCATTATGATATCTGCCAGTTGCCACATCAGCGGAAGGCTTAGCAAGGTGCCGCCGATGACCGTTGCGAAGGTGCAGATCCGCAAACACCAGATCGCTTTAGGGTTGTTCAGGCGTAAAAAGAAGAGATTGTTTTCGGCATAAATGTAGTTGGCAACGATGGAGCTGAAGGCAAACAGAATAACCACAAGGGTAACAAA‑CTCAGCACCCCAGGAACCCATTAGCACCCGCATCGCCTTCTGGATAAGCTGAATACCTTCC‑AGCGGCATGTAGGTTGTGCCGTTACCCGCCAGTAATATCAGCATGGCGCTTGCCGTACAGATGACCAGGGTGTCGATAAAAATGCCAATCATCTGGACAATCCCTTGCGCTGCCGGATGCGGAGGCCAGGACGCCGCTGCCGCTGCCGCGTTTGGCGTCGAACCCATTC > NC_000913/6660‑7139 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |