| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,628,311 | C→T | L333L (CTG→TTG) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,628,311 | 0 | C | T | 80.0% | 38.6 / 7.3 | 26 | L333L (CTG→TTG) | nadR | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| Reads supporting (aligned to +/- strand): ref base C (2/3); new base T (15/5); total (18/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.83e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.75e-01 | |||||||||||
AATATCTTCAACACCACCAGTGCGTGGGAATATGGCCGCGATTATGTCTTTTCACACCTCGGCGGTGATGAGATCGCATTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGCATTTATCGATACCGATTTTGTCACC‑ACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGTTTCGATCTGGTGATCCTGCTGGAGAACAACACGCCGTGGGTGGCGGATGGTTTACGCAGCCTCGGCAGTTCGGTGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATG > NC_000913/4628071‑4628555 | aaTATCTTCAATACCACCAGTGCGTGGGAATATGGTCGCGATTATGTCTTTTCACACCTCGGCGGTGATGAGATCGCATTGCAGTATTCCGATTACGATAAAATCGCGCTGGGCCACGCACAATACATTGATTTTGCAGTGAAATAAGCCAATAAAGTGGCGTTTATTGACACTGATTTTGTCACT‑AACCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGAGCATCCGTTCGTACAGGCGGTGATtgatg > 1:18776/1‑250 (MQ=255) tccataccaccAGGGCGTGGATATATGGTCGCGATTATGTCTTTTCTCACCGCGGCGGGTAAGAGAACTCATTGCAGTATTCCGATTACTCTAAAATCGCGCTTGGCCACGCACAATACATTGATTTTGCAGTGAAATATGCCAATAAAGTGGCTTTTAGTGACACTGATTTTGTCACT‑ACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGAGCATCCGTTCGTACAGGCGTTGATTGATGAATa < 2:289887/242‑1 (MQ=255) caccaGTGCGTGGGAATATGGTCGCGATTATGTCTTTTCACACCTCGGCGGTGATGAGATCGCATTGCAGTATTCCGATTACGATAAAATCGCGCTGGGCCACGCACAATACATTGATTTTGCAGTGAAATATGCCAATAAAGTGGCGTTTATTGACACTGATTTTGTCACT‑ACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGAGCATCCGTTCGTACAGGCGTTGATTGATGAATACCGTTTCGATc < 1:231858/251‑1 (MQ=255) gggAATATGGTCGCGATTATGTCTTTTCACACCTCGGCGGTGATGAGGTCGCATTGCCGTATTCCGATTACGATAAAATCGCGCTGGGCCACGCACAATACATTGATTTTGCAGTGAAATATGCCAATAAAGGGGCGGTTATTGCCACTGATTTTGTCCCT‑AACCAAGCGTTATGCAAAAAGAACGAAGGGCGGGGGGATCCGTTCGGACCGGCGTTGATTGGTTGATACCGTTTCGGTTTGGTGATCctg > 1:61715/1‑251 (MQ=255) gcgATTATGTCTTTTCACACCTCGGCGGTGATGAGATCGCATTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGCATTTATCGATACCGATTTTGTCACC‑ACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATAcc > 1:136947/1‑219 (MQ=255) gcgATTATGTCTTTTCACACCTCGGCGGTGATGAGATCGCATTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGCATTTATCGATACCGATTTTGTCACC‑ACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATAcc < 2:136947/219‑1 (MQ=255) cgATTATGTCTTTTCACACCTCGGCGGTGATGAGATCGCATTGCAGGATTCCGATTACGATAAAATCGCGCTGGGCCACGCACAATACATTGATTTTGCAGTGAAATATGCCAATAAAGTGGCGTTTATTGACACTGATTTTGT‑ACCTAACCAGGCGGTCTGCAAAAAGTACGAAGGGCGTGAGCATCCGTTCGTAAAGGCGTTGATTGATGAATACCGTTTCGATCTGGTGATACTACTGGAGaacaaa > 1:207191/1‑249 (MQ=255) cTTTTCACACCTCGGCGGTGATGAGATCGCATTGCAGTATTCCGATTACGATAAAATCGCGCTGGGCCACGCACAATACATTTATTTTGCAGTGAAATATGCCAATAAAGTGGCGTTTATTGACACTGATTTTTTCACT‑ACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGGGCATCCGTTCGTAAAGGCGTTGATTGATGAATACCGTTTCGATCTGGTGATCCTGCTGGAGAACAACACGCCgtggg > 1:183060/1‑251 (MQ=255) tttCACACCTCGGCGGGGATGAGATCGCATTGCAGTATTCCGATTACGATAAAATCGCGCTTGGCCACGCACAATACATTTATTTTGCAGTGAAATATGCCAATAAAGTGGCGTTTATTGACACTGATTTTGTCTCT‑ACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGAGCATCCGTTCGTACAGGCGTTGATTGATGAATACCGTTTCGATCTGGTGATCCTGCTGGAGAACAACACGCCgtggg < 2:152935/249‑1 (MQ=255) agaTCGCATTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGCATTTATCGATACCGATTTTGTCACC‑ACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGTTTCGATCTGGTGATCCTGCTGGAGAACAACACGCCGTGGGTGGCGGATGGTTTACGCAGCCTc < 1:17384/251‑1 (MQ=255) aGTATTCCGATTACGATAAAATCGCGCTGGGCCACGCACACTACATTGATTTTGCAGTGAAATATGCCAATAAAGTGGCGTTTATTGACACTGATTTTGTCACT‑ACACAGGCGTTCTGCAAAAAGTACGAAGGGCGTGAGCATCCGTTCGTACAGGCGTTGATTGATGAATACCGTTTCGATCTGGTGATCCTGCTGGAGAACAACACGCCGTGGGTGGCGGATGGTTTAAGCAGCCTCGGCAGTTCGGTg > 2:181037/1‑251 (MQ=255) aCGATAAAATCGCGCTGGGCCACGCACAATACATTGATTTTGCAGTGAAATATGCCAATAAAGTGGCGTTTATTGACACTGATTTTGTCACT‑ACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGAGCATCCGTTCGTACAGGCGTTGATTGATGAATACCGTTTCGATCTGGTGATCCTGCTGGAGAACAACACGCCGTGGGTGGCGGATGGTTTACGCAGCCTCGGCAGTTCGGTGGATCGCAAaga < 1:282160/250‑1 (MQ=255) tGATTTTGCAGTGACATATGCCAATAAAGGGGCGTTTATTGACACTGATTTTGTCACT‑ACCCAGAAGTTCTGCAAAAAGTACGACGGGCGTGAGCATCAGTTCGTACAGGCGTTGATTGATGAATACCGTTTAGATCTGGTGATCCTGCTGGAGAACAACACGACGTGGGTGGCGGATGGTTTACGCAGCCTCGGCAGATCGGAGGACCGCAAAGAGTTCCCGAACGTGCtggtggggttgctggtaggg > 2:123736/1‑236 (MQ=255) ttttGCGGTGAAATATGCCAATAAAGTGGCATTTATCGATACCGATTTTGTCACC‑ACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGTTTCGATCTGGTGATCCTGCTGGAGAACAACACGCCGTGGGTGGCGGATGGTTTACGCAGCCTCGGCAGTTCTGTGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAagagcac > 2:149606/1‑247 (MQ=255) ttttGCAGTGAAATATGCCAATAAAGTGGCGTTTATTGACACTGATTTTGTCACT‑ACCCAGGCGTTCTGCAAAAAGTACGCAGGGCGTGAGCATCCGTTCGTACAGGCGTTGATTGATGAATACCGTTTCGATCTGGTGATCCTGCTGGAGAACAACACGCCGTGGGTGGCGGATGGTTTACGCAGCCTCGGCAGTTCGGTGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTGGAAGAGAAc > 1:236158/1‑250 (MQ=255) gCCAATAAAGTGGCGTTTATTGACACTGATTTTGTCACT‑ACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGAGCATACGTTCGTACAGGCGTTGATTGATGAATACCGTTTCGATCTGGTGATCCTGCTGGAGAACAACACGCCGTGGGTGGCGGATGGTTTACGCAGCCTCGGCAGTTCGGTGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTGGAAGAGAACAATATCGAATTCGTGCg > 1:360027/1‑251 (MQ=255) tGGCGTTTATTGACACTGATTTTGTCACT‑ACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGAGCATCCGTTCGTACAGGCGTTGATTGATGCATACCGTTTCGATCTGGTGATCCTGCTGGAGCACAACACGCCGTGGGTGGCGGATGGTTTACGCAGCCTCGGCAGTTCGGTGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTGGAAGAGAACAATATCGAATTCGTGCGGGTTGAag > 1:359661/1‑249 (MQ=255) gacactgATTTTGTCACT‑ACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGAGCATCCGTTCGTACAGGCGTTGATTGATGAATACCGTTTCGATCTGGTGATCCTGCTGGAGAACAACACGCCGTGGGTGGCGGATGGTTTACGCAGCCTCGGCAGTTCGGTGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTGGAAGAGAACAATATCGAATTCGTGCGGGTTGACGAGGACGATTatg > 1:87440/7‑248 (MQ=255) aTTTTGTCAAT‑ACACAGGAGTTCTGCAAAAAGTACGAAGCGCGTGAGCATCCGTTCGTACAGGCGTTGCTTGATGAATACCGTTGCGATATGGAGATCCTGCTGGAGAACAACACGCCGTGGGTGGCGGATGGTTTACGCAGCCTCGGCAGTTCGGTGGATCGCAACGAGTTCCAGAACTTGCTGGTGGAGACGTTGGGCGAGAACAATATCGTATTCGTGCGGGATGaatcgaatgcttagggcagccgt > 2:24144/1‑230 (MQ=255) tcactacccAGGCGTTCTGCAAAAAGTACGAAGGGCGTGAGCATCCGTTCGTACAGGCGTTGATTGATGAATACCGTTTCGATCTGGTGATCCTGCTGGAGAACAACACGCCGTGGGTGGCGGATGGTTTACGCAGCCTCGGCAGTTCGGTGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTGGAAGAGAACAATATCGaa < 1:198602/201‑1 (MQ=255) tcactacccAGGCGTTCTGCAAAAAGTACGAAGGGCGTGAGCATCCGTTCGTACAGGCGTTGATTGATGAATACCGTTTCGATCTGGTGATCCTGCTGGAGAACAACACGCCGTGGGTGGCGGATGGTTTACGCAGCCTCGGCAGTTCGGTGGATCGCAAAGAGGTCCAGAACTTGCTGGTGGAGATGCTGGAAGAGAACAATATCGaa > 2:198602/9‑209 (MQ=255) ccAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGTTTCGATCTGGTGATCCTGCTGGAGAACAACACGCCGTGGGTGGCGGATGGTTTACGCAGCCTCGGCAGTTCTGTGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTTCGACAGTCGTTTCctgcgctgcg < 1:149606/250‑1 (MQ=255) agcATCCGTTCGTACAGGCGTTGATTGCTGCATAACGTTTCGATCTGGTGATCATGCTGAAGAACAACACGCCGTGGGTGGCGGATGGTTTACGAAGCCTCGGAAGTTCGGTGGGTCGCAAAGAGTTCCAGAACTTGATGGTGGAGATGCTCGAAGAGAACCATATCGACTTCGAGCGGGTTGAAGAGGCCGATTATAACAGCCGTTTCCTGCGCAGCGTGGAGCTGGTGCGGGGGATGATGGGGGAGcc > 1:244292/3‑249 (MQ=255) gTTCGTACAGGCGTTGATTGATGAATACCGTTTCGATCTGGTGATCCTGCTGGAGAACAACACGCCGTGGGTGGCGGATGGTTTACGCAGCCTCGGCAGTTCGGTGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTGGAAGAGAACAATATCGAATTCGTGCGGGTTGAAGAGGACGATTATGACAGCCGTTTCCTGCGCTGCGTGGAGCTGGTGCGGGAGATGATGGGGGAGCAGAGATAAc > 1:349963/1‑251 (MQ=255) cAGGCGTTGATTGATGAATACCGTTTCGATCTGGTGATCCTGCTGGAGAACAACACGCCGTGGGTGGCGGATGGTTTACGCAGCCTCGGCAGTTCGGTGGATCGCTAAGAGTTCCAGACCTTGCTGGTGGAGATGCTGGAAGAGCACAATATCGACTTCGTGCGGGTTGCAGAGGACGATTATGACAGCCGTTTCCTGCGATGCGTGGCGCGGGTGCGGGGGTTGATGGGGGacctgagtcaaccgcgatg > 2:210425/1‑233 (MQ=255) aGGCGTTGATTGATGAATACCGTTTCGATCTGGTGATCCTGCTGGCGAACAACACGCCGTGGGTGGCGGATGGTTTACGCAGCCTCGGCAGTTCGGTGGATCGCAAAGAGTTCGAGAACTTGCTGGTGGCGATTCTGGAAGTGAACAATATCGAATTCGTGCGGGTTGAAGAGGACGATTATGAAAGCCGTTTCCTGCGCTGCGTGGAGCTGGTGGGGGAGATGGTGGGGGAGCAGAGATAAcagagatg > 2:310660/1‑243 (MQ=255) | AATATCTTCAACACCACCAGTGCGTGGGAATATGGCCGCGATTATGTCTTTTCACACCTCGGCGGTGATGAGATCGCATTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGCATTTATCGATACCGATTTTGTCACC‑ACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGTTTCGATCTGGTGATCCTGCTGGAGAACAACACGCCGTGGGTGGCGGATGGTTTACGCAGCCTCGGCAGTTCGGTGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATG > NC_000913/4628071‑4628555 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |