| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 5,732 | T→G | D243A (GAT→GCT) | yaaA ← | DNA binding and peroxide stress response protein YaaA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 5,732 | 0 | T | G | 94.3% | 99.7 / ‑3.3 | 36 | D243A (GAT→GCT) | yaaA | DNA binding and peroxide stress response protein YaaA |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base G (16/17); total (18/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.57e-01 | |||||||||||
GGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTTAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAATCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATGAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGAAGCTGATGATCTTAAATTTGCCGTTCTTCTCATCGAGGAACACCGGCTTGATAATCTCGGCATTCAATTTCTTCGGCTTCACCGATTTAAAATACTCATCTGACGCCAGATTAATCACCACATTATCGCCTTGT > NC_000913/5501‑5977 | ggTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTA‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAAGAAGCTTCATCAAAGAAGTAAcc > 1:233410/1‑251 (MQ=255) ggTCCAGGCAAACATCACCGCTAAATGACAAATGACGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCt > 1:337338/1‑251 (MQ=255) cccagcccaaCATCACCGCTAAATGTCAAATGCCCTGTCACAATCCGGCGTTCAGCGCCTGATGTGTCGCTGGCGC‑TCCTTATC‑AGTCCTTCGTGAATTCTG‑CACTATATCTAATCTGCATGCTTTTGTAGGCACGATAAGGCGTTCACTCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTATAAACACCAGTTCGCCATTGCTGGAGGAAGCTCCATCAAATAAGTAACCTTCTCTAt < 2:15459/243‑1 (MQ=255) ccGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGtt < 1:48656/251‑1 (MQ=255) gACAAATGCCGGGTAACAATCCTGCATTCAGCGCCTGATGCGCCTCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGt < 1:43455/250‑1 (MQ=255) aaaTGCCGGGTAACAAGCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTgg < 1:237885/251‑1 (MQ=255) tGCCGGGTAACAATACAGCCTTCAGCGCCTGATGAGACGCTGGCGC‑CTATTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGAATTGACTGCAAACTTAACACTGCTCGAAGCGATTAAACACTAGTTCGCCATTGCTGGAGGAAACTTCATCAAAAAAGGAAGCTTCGCTATTAAAACCAGTCAGTTGCTATgggtggtgc > 2:213057/1‑243 (MQ=255) gggTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCg < 1:250317/251‑1 (MQ=255) aattctgCATCCAGCGCCTTAGGCGACGCTGGCGC‑‑TCTTTTCCAGGCCTACGTGAATTCTG‑CAATATATTGAACCTGCATGCTTTTGTAGGTCGTATAAGGCGTTCACGCCGCATCCTGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCTGCCGAGTTTCa < 2:347576/245‑1 (MQ=255) atccAGCGCCTAATGCGGCGCTGGCCCTGTCTTA‑C‑GGGCCTACTGGAATTCTGACAA‑ATATTGAAACTGCATGCTTTTGTCTGCCGGATAAGGCGTTCACGCCGCTTCCGGCCTTGACTGCAAACTTAACGCTGCTCGTAGCGTTTACACACCAGGTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTTGCTATTAAAACCAGGCAGTTGCTCTGGTTTTGTCAGCCGATTTTCaataataaa < 2:1491/248‑4 (MQ=255) gATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACtcatc < 1:191856/250‑1 (MQ=255) tgcgggCGC‑GACTTATC‑AGGCATACGTGAATTCTG‑AAATATATTGAATAGGCATGCTTTTGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCATTGACTGCAAACGTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGAAACCTTCGCTATTAAAACCAGTCAGTTGCGCTGGTTTGGTCa < 2:125261/210‑1 (MQ=255) cGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCa > 1:125261/1‑214 (MQ=255) cgc‑gTCTTATC‑AGGCCTACGTTAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAATCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCGGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATGAAACGACTCATCAGACCGCGTGCttt > 1:162992/1‑251 (MQ=255) c‑AGGCCTACGGGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAg < 1:111620/251‑1 (MQ=255) aGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCCTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTAGCGt > 1:248633/1‑248 (MQ=255) agcatACGTGAAATCTG‑CACTATATTGCATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGAATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACACGTTCGCCATTGCTGGAGGAAGCTTCATAAAAGAAGAAACCTTAGATATTAAAACAAGTAAGTAGCACTGGATTAGTAAGCCGATTTTCCATAATACACCGACTCATCAAACCGCGGGCTTTCTAAGCATAGa > 2:233712/5‑250 (MQ=255) tgaaTTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGC‑CGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGAAGCtgattat > 1:299986/3‑248 (MQ=255) cAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTATCGTAGAAGATGATTATCTTAAAtt > 1:296708/1‑251 (MQ=255) atTGAATCTACATGCTTTGGTAGGACGGATACGGCGGTCGCGCCGCATCAGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACCCCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGATGGGTCAGCCGATTTTCAATAATAAAACGCCTCATCAGACCGCGTGCGTTATTAGCGTCGAAgatgattacatataatttgcagt > 2:272168/1‑234 (MQ=255) tGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGAAGCTGATTATCTTAAATTTGCCGttc > 1:255503/1‑251 (MQ=255) tCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTaa < 1:334357/140‑1 (MQ=255) tCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACATTCGCTATTaa > 2:334357/1‑140 (MQ=255) cTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGAAGCTGATTATCTTAAATTTGCCGTTCTTCTCATCGAgg > 1:204648/1‑251 (MQ=255) ttttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGCCTGCAAACTTAACGCTGCTCGTAGCGATTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCtt > 1:328368/1‑200 (MQ=255) ggATAAGGCTTTCAAGCCGCAACCGGCATTGACTGCAAACTTAACGCTGCGCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAATCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCGGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATGAAACGACTCATCAGACCGCGTGCTTTCTTAGCGGAGAAGCTGATGATCTTAAATTTGCCGTTCTTCTCATCGAGGAACACCGGCTTg < 2:162992/251‑1 (MQ=255) cACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTAAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGAAGCTGATTATCTTAAATTTGACGTTCTTCTCATCGAGGAACACCGGCTTGATAATCTGGGc > 1:181504/1‑250 (MQ=255) aTCCGGCATTGACTGCAAACCTAACGCTGCACGGAGAGGTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTTATCAAAGAAGTAACCGTCGATATTAAAACCAGTCATTTGCGCTTGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCATACCGCGTGCTTTCTTAGCGTAGAAGCTGATTATCTTAAATTTGCCGTTCTTCTCATCGAGGAACACCGGCTTGATAATCTCGGCATTCAAttt < 2:213523/251‑1 (MQ=255) aTTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGAAGCTGATTATCTTAAATTTGCCGTTCTTCTCATCGAGGAACACCGGCTTGATAATCTCGGCATTCAATTTCTTCGGc > 1:14576/1‑251 (MQ=255) gACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAAGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGAAGCTGATTATCTTAAATTTGCCGTTCTTCTCATCGAGGAACACCGGCTTGATAATCTCGGCATTCAATTTCTTCGGCTTc < 1:274553/251‑1 (MQ=255) cAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGAAGCTGATTATCTTAAATTTGCCGTTCTTCTCATCGAGGAACACCGGCTTGATAATCTCGGCATTCAATTTCTTCGGCTTCACCGa < 1:78423/251‑1 (MQ=255) tAACGCTGCTCGTAGCGATTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGAACGCGTGCTTTCTTAGCGTAGAAGCTGATTATCTTAAATTTGCCGTTCTTCTCATCGAGGAACACCGGCTTGATAATCTCGGCATTCAATTTCTTCGGCTTCACCGCTTTaa > 1:169723/1‑250 (MQ=255) gctCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGAAGCTGATTATCTTAAATTTGCCGTTCTTCTCATCGAGGAACACCGGCTTGATAATCTCGGCAtt < 1:100137/217‑1 (MQ=255) gCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGAAGCTGATTATCTTAAATTTGCCGGTCTTCTCATCGAGGAACACCGGCTTGATAATCTCGGCATTCAATTTCTTCGGCTTCACCGATTTAAAATACTCATCTGACg < 1:140239/251‑1 (MQ=255) aaCACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGCTTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGAAGCTGATTATCTTAAATTTGCCGTTCTTCTCATCGAGGAACACCGGCTTGATAATCTCGGCATTCAATTTCTTCGGCTTCACCGATTTAAAATACTCATCTGACGCCAGAtt > 1:252386/1‑251 (MQ=255) aggaAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGAAGCTGATTATCTTAAATTTGCCGTTCTTCTCATCGAGGAACACCGGCTTGATAATCTCGGCATTCAATTTCTTCGGCTTCACCGATTTAAAATACTCATCTGACGCCAGATTAATCACCACATTATCGCCTtgt < 1:227727/251‑1 (MQ=255) | GGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTTAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAATCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATGAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGAAGCTGATGATCTTAAATTTGCCGTTCTTCTCATCGAGGAACACCGGCTTGATAATCTCGGCATTCAATTTCTTCGGCTTCACCGATTTAAAATACTCATCTGACGCCAGATTAATCACCACATTATCGCCTTGT > NC_000913/5501‑5977 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |