| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 5,642 | A→C | intergenic (+112/+41) | yaaX → / ← yaaA | DUF2502 domain‑containing protein YaaX/DNA binding and peroxide stress response protein YaaA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 5,642 | 0 | A | C | 92.9% | 52.6 / ‑3.2 | 29 | intergenic (+112/+41) | yaaX/yaaA | DUF2502 domain‑containing protein YaaX/DNA binding and peroxide stress response protein YaaA |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base C (15/11); total (17/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.95e-01 | |||||||||||
GGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCTACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGAC‑AAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTTAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAATCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATGAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGAAGCTGATGATCTTAAATTTGCCGTTCTTCTCATCGAGG > NC_000913/5403‑5881 | ggAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGGCATGGGCCAGGGAAACATCACCGCTAAATAAC‑AAAAGCCGGGGAAAAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTTGATTCTG‑CAATATATTTAAACTGCATGCTTTTGTAGGCCGGGTAAGGCgg > 1:213523/1‑250 (MQ=255) gCAATCGCTGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACACCACCGCTAAAAGAC‑AAATGCCGGGTAACAATCCGGCATTCAACGCCCGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGGATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTg > 1:254156/1‑251 (MQ=39) ccgcGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCCAGGGCCCGGCAAACACCAACACTAAAAGACCAAAT‑CCCGGTAACAATCCCACAGTCAACGCCTGATGCGCCACCGGCGC‑GTCTTTTC‑AGGCCTACGTGACATCTG‑CAATATATTGAATCTTCATTCTTTTATAGGCCGGGTTAGGCGGTCCCGCCGCCACCCGCCGTGACTGCACACTTATCGCCGCTCGttacgtcttaacaccc > 2:111620/1‑235 (MQ=255) aaaGAAAGCGCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGAC‑AAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCTTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGc < 1:214483/250‑1 (MQ=255) ggTCATGGTCCAGGCAAACATCACCGCTAAATGAC‑AAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTA‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAAGAAGCTTCATCAAAGAAGTAAcc > 1:233410/1‑251 (MQ=255) ggTCCAGGCAAACATCACCGCTAAATGAC‑AAATGACGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCt > 1:337338/1‑251 (MQ=255) cccagcccaaCATCACCGCTAAATGTC‑AAATGCCCTGTCACAATCCGGCGTTCAGCGCCTGATGTGTCGCTGGCGC‑TCCTTATC‑AGTCCTTCGTGAATTCTG‑CACTATATCTAATCTGCATGCTTTTGTAGGCACGATAAGGCGTTCACTCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTATAAACACCAGTTCGCCATTGCTGGAGGAAGCTCCATCAAATAAGTAACCTTCTCTAt < 2:15459/243‑1 (MQ=255) ccGCTAAATGAC‑AAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGtt < 1:48656/251‑1 (MQ=255) gAC‑AAATGCCGGGTAACAATCCTGCATTCAGCGCCTGATGCGCCTCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGt < 1:43455/250‑1 (MQ=255) aaaTGCCGGGTAACAAGCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTgg < 1:237885/251‑1 (MQ=255) tGCCGGGTAACAATACAGCCTTCAGCGCCTGATGAGACGCTGGCGC‑CTATTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGAATTGACTGCAAACTTAACACTGCTCGAAGCGATTAAACACTAGTTCGCCATTGCTGGAGGAAACTTCATCAAAAAAGGAAGCTTCGCTATTAAAACCAGTCAGTTGCTATgggtggtgc > 2:213057/1‑243 (MQ=255) gggTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCg < 1:250317/251‑1 (MQ=255) aattctgCATCCAGCGCCTTAGGCGACGCTGGCGC‑‑TCTTTTCCAGGCCTACGTGAATTCTG‑CAATATATTGAACCTGCATGCTTTTGTAGGTCGTATAAGGCGTTCACGCCGCATCCTGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCTGCCGAGTTTCa < 2:347576/245‑1 (MQ=255) atccAGCGCCTAATGCGGCGCTGGCCCTGTCTTA‑C‑GGGCCTACTGGAATTCTGACAA‑ATATTGAAACTGCATGCTTTTGTCTGCCGGATAAGGCGTTCACGCCGCTTCCGGCCTTGACTGCAAACTTAACGCTGCTCGTAGCGTTTACACACCAGGTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTTGCTATTAAAACCAGGCAGTTGCTCTGGTTTTGTCAGCCGATTTTCaataataaa < 2:1491/248‑4 (MQ=255) gATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACtcatc < 1:191856/250‑1 (MQ=255) tgcgggCGC‑GACTTATC‑AGGCATACGTGAATTCTG‑AAATATATTGAATAGGCATGCTTTTGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCATTGACTGCAAACGTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGAAACCTTCGCTATTAAAACCAGTCAGTTGCGCTGGTTTGGTCa < 2:125261/210‑1 (MQ=255) cGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCa > 1:125261/1‑214 (MQ=255) cgc‑gTCTTATC‑AGGCCTACGTTAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAATCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCGGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATGAAACGACTCATCAGACCGCGTGCttt > 1:162992/1‑251 (MQ=255) c‑AGGCCTACGGGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAg < 1:111620/251‑1 (MQ=255) aGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCCTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTAGCGt > 1:248633/1‑248 (MQ=255) agcatACGTGAAATCTG‑CACTATATTGCATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGAATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACACGTTCGCCATTGCTGGAGGAAGCTTCATAAAAGAAGAAACCTTAGATATTAAAACAAGTAAGTAGCACTGGATTAGTAAGCCGATTTTCCATAATACACCGACTCATCAAACCGCGGGCTTTCTAAGCATAGa > 2:233712/5‑250 (MQ=255) tgaaTTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGC‑CGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGAAGCtgattat > 1:299986/3‑248 (MQ=255) cAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTATCGTAGAAGATGATTATCTTAAAtt > 1:296708/1‑251 (MQ=255) atTGAATCTACATGCTTTGGTAGGACGGATACGGCGGTCGCGCCGCATCAGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACCCCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGATGGGTCAGCCGATTTTCAATAATAAAACGCCTCATCAGACCGCGTGCGTTATTAGCGTCGAAgatgattacatataatttgcagt > 2:272168/1‑234 (MQ=255) tGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGAAGCTGATTATCTTAAATTTGCCGttc > 1:255503/1‑251 (MQ=255) tCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTaa < 1:334357/140‑1 (MQ=255) tCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACATTCGCTATTaa > 2:334357/1‑140 (MQ=255) cTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGAAGCTGATTATCTTAAATTTGCCGTTCTTCTCATCGAgg > 1:204648/1‑251 (MQ=255) ttttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGCCTGCAAACTTAACGCTGCTCGTAGCGATTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCtt > 1:328368/1‑200 (MQ=255) | GGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCTACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGAC‑AAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTTAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAATCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATGAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGAAGCTGATGATCTTAAATTTGCCGTTCTTCTCATCGAGG > NC_000913/5403‑5881 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |