| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 5,603 | T→G | intergenic (+73/+80) | yaaX → / ← yaaA | DUF2502 domain‑containing protein YaaX/DNA binding and peroxide stress response protein YaaA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 5,603 | 0 | T | G | 91.7% | 52.3 / ‑3.2 | 24 | intergenic (+73/+80) | yaaX/yaaA | DUF2502 domain‑containing protein YaaX/DNA binding and peroxide stress response protein YaaA |
| Reads supporting (aligned to +/- strand): ref base T (2/0); new base G (11/11); total (13/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.82e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.34e-01 | |||||||||||
AGGTCACTGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCTACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGAC‑AAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTTAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAATCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATGAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGA > NC_000913/5377‑5843 | aGGTCACTGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGAC‑AAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CCATATATTTAATCTGc > 1:347576/1‑251 (MQ=255) ggAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGGCATGGGCCAGGGAAACATCACCGCTAAATAAC‑AAAAGCCGGGGAAAAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTTGATTCTG‑CAATATATTTAAACTGCATGCTTTTGTAGGCCGGGTAAGGCgg > 1:213523/1‑250 (MQ=255) caacaTTATGAATGGCGAGGCAATCGCTGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCCAACATCACCGCTAAATGAC‑AAAAGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTAAGTGAATTCTG‑CAATATATTGAATTTGCAAGATTTTGTAgggcgggtaagggggtcacg > 1:377747/1‑233 (MQ=255) tATGAATGGCGAGGCAATCGCTGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGAC‑CAATGCCGGGTAACAATCCGGCATTCAGCGCCCGATGCGACGCTGGGGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATTCTTTTGTAGGccggcaaaggcggttacgccccat > 1:1491/1‑228 (MQ=255) gCAATCGCTGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACACCACCGCTAAAAGAC‑AAATGCCGGGTAACAATCCGGCATTCAACGCCCGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGGATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTg > 1:254156/1‑251 (MQ=39) ccgcGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCCAGGGCCCGGCAAACACCAACACTAAAAGACCAAAT‑CCCGGTAACAATCCCACAGTCAACGCCTGATGCGCCACCGGCGC‑GTCTTTTC‑AGGCCTACGTGACATCTG‑CAATATATTGAATCTTCATTCTTTTATAGGCCGGGTTAGGCGGTCCCGCCGCCACCCGCCGTGACTGCACACTTATCGCCGCTCGttacgtcttaacaccc > 2:111620/1‑235 (MQ=255) aaaGAAAGCGCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGAC‑AAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCTTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGc < 1:214483/250‑1 (MQ=255) ggTCATGGTCCAGGCAAACATCACCGCTAAATGAC‑AAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTA‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAAGAAGCTTCATCAAAGAAGTAAcc > 1:233410/1‑251 (MQ=255) ggTCCAGGCAAACATCACCGCTAAATGAC‑AAATGACGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCt > 1:337338/1‑251 (MQ=255) cccagcccaaCATCACCGCTAAATGTC‑AAATGCCCTGTCACAATCCGGCGTTCAGCGCCTGATGTGTCGCTGGCGC‑TCCTTATC‑AGTCCTTCGTGAATTCTG‑CACTATATCTAATCTGCATGCTTTTGTAGGCACGATAAGGCGTTCACTCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTATAAACACCAGTTCGCCATTGCTGGAGGAAGCTCCATCAAATAAGTAACCTTCTCTAt < 2:15459/243‑1 (MQ=255) ccGCTAAATGAC‑AAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGtt < 1:48656/251‑1 (MQ=255) gAC‑AAATGCCGGGTAACAATCCTGCATTCAGCGCCTGATGCGCCTCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGt < 1:43455/250‑1 (MQ=255) aaaTGCCGGGTAACAAGCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTgg < 1:237885/251‑1 (MQ=255) tGCCGGGTAACAATACAGCCTTCAGCGCCTGATGAGACGCTGGCGC‑CTATTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGAATTGACTGCAAACTTAACACTGCTCGAAGCGATTAAACACTAGTTCGCCATTGCTGGAGGAAACTTCATCAAAAAAGGAAGCTTCGCTATTAAAACCAGTCAGTTGCTATgggtggtgc > 2:213057/1‑243 (MQ=255) gggTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCg < 1:250317/251‑1 (MQ=255) aattctgCATCCAGCGCCTTAGGCGACGCTGGCGC‑‑TCTTTTCCAGGCCTACGTGAATTCTG‑CAATATATTGAACCTGCATGCTTTTGTAGGTCGTATAAGGCGTTCACGCCGCATCCTGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCTGCCGAGTTTCa < 2:347576/245‑1 (MQ=255) atccAGCGCCTAATGCGGCGCTGGCCCTGTCTTA‑C‑GGGCCTACTGGAATTCTGACAA‑ATATTGAAACTGCATGCTTTTGTCTGCCGGATAAGGCGTTCACGCCGCTTCCGGCCTTGACTGCAAACTTAACGCTGCTCGTAGCGTTTACACACCAGGTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTTGCTATTAAAACCAGGCAGTTGCTCTGGTTTTGTCAGCCGATTTTCaataataaa < 2:1491/248‑4 (MQ=255) gATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACtcatc < 1:191856/250‑1 (MQ=255) tgcgggCGC‑GACTTATC‑AGGCATACGTGAATTCTG‑AAATATATTGAATAGGCATGCTTTTGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCATTGACTGCAAACGTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGAAACCTTCGCTATTAAAACCAGTCAGTTGCGCTGGTTTGGTCa < 2:125261/210‑1 (MQ=255) cGCTGGCGC‑GTCTTATC‑AGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCa > 1:125261/1‑214 (MQ=255) cgc‑gTCTTATC‑AGGCCTACGTTAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAATCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCGGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATGAAACGACTCATCAGACCGCGTGCttt > 1:162992/1‑251 (MQ=255) c‑AGGCCTACGGGAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAg < 1:111620/251‑1 (MQ=255) aGGCCTACGTGAATTCTG‑CAATATATTGAATCTGCCTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAAGCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATAAAACGACTCATCAGACCGCGTGCTTTCTTAGCGt > 1:248633/1‑248 (MQ=255) agcatACGTGAAATCTG‑CACTATATTGCATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGAATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACACGTTCGCCATTGCTGGAGGAAGCTTCATAAAAGAAGAAACCTTAGATATTAAAACAAGTAAGTAGCACTGGATTAGTAAGCCGATTTTCCATAATACACCGACTCATCAAACCGCGGGCTTTCTAAGCATAGa > 2:233712/5‑250 (MQ=255) | AGGTCACTGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCTACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGAC‑AAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGC‑GTCTTATC‑AGGCCTACGTTAATTCTG‑CAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGCAAACTTAACGCTGCTCGTAGCGTTTAAACACCAGTTCGCCATTGCTGGAGGAATCTTCATCAAAGAAGTAACCTTCGCTATTAAAACCAGTCAGTTGCTCTGGTTTGGTCAGCCGATTTTCAATAATGAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGA > NC_000913/5377‑5843 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |