| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,624,355 | T→C | T145T (ACA→ACG) | ytjB ← | putative inner membrane protein Smp |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,624,355 | 0 | T | C | 92.6% | 65.9 / ‑5.5 | 28 | T145T (ACA→ACG) | ytjB | putative inner membrane protein Smp |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (12/13); minor base G (2/0); total (15/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTACCCTGTAGCAGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAGTGTCAGGCGCAGATAGCCGAGCGGTCCGT‑TTTTACCCGCAATTGGCTCGACAATCTGCTGGTTAAAATAGCCGCCTGCTTTTTTACCGTCGAGCGCCAGCCGGTCGCGCACTTCGACGCTTTCGCCAGAACGTGCGATAAGATCGCCTTGTTCGTCATACACACCCGCGTCGAGGATACGGCTTTCATCCGTTAACTGATCGAGGATCGCCTGAATGCGTTTTTCATCCGGTGAGTCGG > NC_000913/4624119‑4624593 | aCGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGCGTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCCGGCGTAAAATGTTAGTGGGGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGGATGGGTGTCGAGGGTCAGGCGCCGAt > 1:25843/1‑250 (MQ=255) tttCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTAACCTGTAGCAGCGTGCGGGTCAGCACTACGCCGATTGCCCGAGAAAGCAGCAACATCAGGCGTAAAATGTTAGTGGGGTTATCCACCTGTTGGGCTTCGGTGGCGGGCGTATGGGGGTCGAGCGTCAGGCGCAGATAGCCg > 1:211911/1‑251 (MQ=255) ttttgtaATGGGTCCCTCTTTTTTCCCGCTTTCTGCTTCTTCCGGCACTGGTTTGCTGGCGGTTAACAGGAATGGAGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGCGTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCTCCTGTTGGGCTTGGGTGGCGAGCGTATGGGTGTCTAGCGTCAGGCGCAGATAGCCGAGCGGTcc < 2:143663/245‑1 (MQ=255) tGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGCTTTCTTCCCGCGGGGACGTTTTCCCTTTAGCAGCGTGCGGGGCAGCACTAAGCCCATTGCCAGTGAAAGCCGCAACAACAGGCGTAAAATGTTAGGGGTGGTTTCCCCCTGTTTGGGTTTGGTGGGGAGCGTATGGGGGGCGAGGGTCAGgcgctgggaggcgggcgggccgg > 2:195674/1‑232 (MQ=255) gttaaggtctcctcctTTTGTCTCCCTTTCTTCCTCTTCCTGCACCGGCTTGCTGGCGTTTCACAGGTATGGCTATTGCTTCCAGCGGGTACGTTTTCCCTGTATCAGCGTGCGGGTCAGCGCCACGCAGATGTCCAGTGAACGCAGCATCATCAGGCGTAAAATGTTAGTGGTGTTATCCTCCTGTTGGGCTTTGGTGGCGAGTGTATGGGTGTCGAGCGTCAGGTGCAGATTGCCGTGCGTTCCGt‑ttt < 2:214738/237‑1 (MQ=255) ggTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGGAAGTTTACCCTGTAGCAGCGGGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACCTCCGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGGATGGGTGTCGGGCGTCAGGCGCAGATAGCCGGGCGGTCCGt‑tttttccgac > 1:245741/1‑245 (MQ=255) ctgtgttcccGCTTTCTTCCTCTTCCGTCACCGGTTTGCTGGCGGTTAACAGGGAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGCGTGCGGGTCAGCACTTCGCCGATTGCCAGTGAAAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTGCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGT‑TTTTCCCGGCAATTg < 2:120173/240‑1 (MQ=255) ttCTCGCTTTCTTCCTCTTCCGGCCCCGGTTTGCTGGCGGGTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGCGTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGt‑ttttcccgg < 2:296068/238‑6 (MQ=255) ttCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGCGTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCAGGCGGAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGGATGGGGGTCGAGCGTCCGGCGCAGATAGCCGGGCGGGCCGt‑ttttcccggggatcgggagagg > 1:296068/1‑233 (MQ=255) ccggCTTTCTCCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGAGTGCTGCCAGCGGGTTCGTTTACCCTGTAGCAGCGTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGT‑TTTTCCCGGCAATTGGTTCGACaa < 2:129525/248‑1 (MQ=255) tcGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTTCCCTGTAGCAGCGTGCGGGTCAGCACTACGCCGGTTGCCAGTGAAAGCAGCAACATCCGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGGGCGTCAGGCGCAGATAGCCGCGCGGGCCGG‑TTTTCCCGGCGATTGGTTCGACAAt > 1:1916/1‑251 (MQ=255) cttcctcttccGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGCGGGCGGGTCCGCACTACGCCGATTGCCAGTGAAAGCAGCCACATCAGGCGTAAAATGTTAGGGGTGTTATCCACCTGTTGGGGTTCGGTGGCGAGCGTATGGGGGACGAGCGTCAGGCGCAGATAACCGAGCGGTCCGG‑TTTTCCCGGCAAATGGGTCGACAATCTGCTgg > 1:165534/1‑251 (MQ=255) ccgggCATCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTTCGTTTACCCGGTAGCAGCGTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTGCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGT‑TTTTCCCGGCAATTGGTTCGACAATCTGCTGGTGAAAATa < 2:165534/248‑1 (MQ=255) ccGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGCGTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGT‑TTTTCCCGGCAATTGGTTCGACAATCTGCTGGTTAAAATAgccgccc < 1:195674/251‑2 (MQ=255) gctgcCAGCGGGTACGTTTACCCTGTAGCAGCGTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGT‑TTTTCCCGGCAATTGGTTCGACAATCTGCTGGTTAAAATAGCCGCCCGCTTTTTTACCGTCGAGCGCCAGCCGGTcgcg < 1:26192/250‑1 (MQ=255) gTGAAAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGT‑TTTTCCCGGCAATTGGTTCGACAATCTGCTGGTTAAAATAGCCGCCCGCTTTTTTACCGTCGAGCGCCAGCCGGTCGCGCACTTCGACGCTTTCGCCAGAACGGGCGATAAGATCGCCTTGTTCGTCATACACGCCcgcg > 1:141239/1‑251 (MQ=255) gaaagcagcAACATCAGGCGTAAAATGTTAGTGGTGTTATCCCCCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGT‑TTTTCCCGGCAATTGGTTCGACAATCTGCTGGTTAAAATAGCCGCCCGCTTTTTTACCGTCGAGCGCCAGCCGGTCGCGCACTTCGACGCTTTTGCCAGAACGGGCGATAAGATCGCCTTGTTCGTCATACACGCCCGCGTc < 1:13240/248‑1 (MQ=255) agcaACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGT‑TTTTCCCGGCAATTGGTTCGACAATCTGCTGGTTAAAATAGCCGCCCGCTTTTTTACCGTCGAGCGCCAGCCGGTCGCGCACTTCGACGCTTTCGCCAGAACGGGCGATAAGATCGCCTTGTTCGTCATACACGCCCGCGTCGAGGAt < 1:26266/251‑1 (MQ=255) gcaACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGT‑TTTTCCCGGCAATTGGTTCGACAATCTGCTGGTTAAAATAGCCGCCCGCTTTTTTACCGTCGAGCGCCAGCCGGTCGCGCACTTCGACGCTTTCGCCAGAACGGGCGATAAGATCGCCTTGTTCGTCATACACGCCCGCGTCGCGGAt > 1:222245/1‑250 (MQ=255) ggCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGT‑TTTTCCCGGCAATTGGTTCGACAATCTGCTGGTTAAAATAGCCGCCCGCTTTTTTACCGTCGAGCGCCAGCCGGTCGCGCACTTCGACGCTTTCGCCAGAACGGGCGATAAGATCGCCTTGTTCGTCATACACGCCCGCGTCGAGGATACGGCTTTc > 1:336467/1‑250 (MQ=255) tGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGT‑TTTTCCCGGCAATTGGTTCGACAATCTGCTGGTTAAAATAGCCGCCCGCTTTTTTACCGTCGAGCGCCAGCCGGTCGCGCACTTCGACGCTTTCGCCAGAACGGGCGATAAGATCGCCTTGTTCGTCATACACGCCCGCGTCGAGGATACGGCTTTCATCCGTTAAc > 1:324571/1‑251 (MQ=255) gtgtgtgggtgtctcctccttttGGGCGTCGGTGGCGGGCGTATGGGTGTCGAGCGGTAGGCGCAGATAGCCGAGCGGTC‑GTGTTTTCCCGGCAATGGGTGCGACAATCTGCTGGTGAAAATAGCCGCCCGCTTTTTTACCGTCGAGCGCCAGCCGGTCGCGCACGTCGACGCTTTCGCCAGAACGGGCGATAAGATCTCCTTGTTCGTCATACACGCCCGCGTCGAGGATACGGCTTTCATCCGTTAAc < 2:136968/229‑1 (MQ=255) tATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAGAGTAAGGCGCAGATAGCCGAGCGGTCCGT‑TTTTCCCGGCAATTGGGTCGACAATCTGCTGGTTAAAATAGCCGCCCGCTTTTTTACCGTCGAGCGCCAGCCGGTCGCGCCATTCGACGCTTTCGCCAGAACGGGCGATAAGGTCGACTTGTTCGTCATACACGCCCGCCGCGAGGTTACGGATTTCATCCGTTTACTGCACGAGGagc > 2:106966/1‑249 (MQ=255) cacgtttGGGCTTCGGGTGCGGGCGTATGGGTGGCGAGCGGCAGGTGCCGATAGCCGAGCGGTCCGT‑TTTTCCCGGCAATTGGTTCGACAATCTGCTGGTTAAAATAGCCGCCCTCTTTTTTACCGTCGGGCGCCTGCCGGTCGCGCACTTCGACTCTTTCGCCATAACGGGCGATAAGATCGCCTTGGTCGTCATACACGCCCGCGTCGAGGATACGGCTTTCATCCGTTAACTGATCGAGGATCGCCTg < 2:193796/246‑1 (MQ=255) ccTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGT‑TTTTCCCGGCAATTGGTTCGACAATCTGCTGGTTAAAATAGCCGCCCGCTTTTTTACCGTCGAGCGCCAGCCGGTCGCGCACTTCGACGCTTTCGCCAGAACGGGCGATAAGATCGCCTTGTTCGTCATACACGCCCGCGTCGAGGATACGGCTTTCATCCGTTAACTGATCGAGGATCGCCTGa < 1:246161/251‑1 (MQ=255) gggCTTCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGT‑TTTTCCCGGCAATTGGTTCGACAATCTGCTGGTTAAAATAGCCGCCCGCTTTTTTACCGTCGAGCGCCAGCCGGTCGCGCACTTCGACGCTTTCGCCAGAACGGGCGATCAGATCGCCTTGTTCGTCATACACGCCCGCGTCGAGGATACGGCTTTCATCCGTTAACTGATCGAGGATCGCCTGAATGCGt > 1:158659/1‑251 (MQ=255) ttCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGT‑TTTTCCCGGCAATTGGTTCGACAATCTGCTGGTTAAAATAGCCGCCCGCTTTTTTACCGTCGAGCGCCAGCCGGTCGCGCACTTCGACGCTTTCGCCAGAACGGGCGATAAGATCGCCTTGTTCGTCATACACGCCCGCGTCGAGGATACGGCTTTCATCCGTTAACTGATCGAGGATCGCCTGAATGCGttttt > 1:307536/1‑251 (MQ=255) aTGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGT‑TTTTCCCGGCAATTGGTTCGACAATCTGCTGGTTAAAATAGCCGCCCGCTTTTTTACCGTCGAGCGCCAGCCGGTCGCGCACTTCGACGCTTTCGCCAGAACGGGCGATAAGATCGCCTTGTTCGTCATACACGCCCGCGTCGAGGATACGGCTTTCATCCGTTAACTGATCGAGGATCGCCTGAATGCGTTTTTCATCCGGCGAGTCgg > 1:271081/1‑251 (MQ=255) | ACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTACCCTGTAGCAGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAGTGTCAGGCGCAGATAGCCGAGCGGTCCGT‑TTTTACCCGCAATTGGCTCGACAATCTGCTGGTTAAAATAGCCGCCTGCTTTTTTACCGTCGAGCGCCAGCCGGTCGCGCACTTCGACGCTTTCGCCAGAACGTGCGATAAGATCGCCTTGTTCGTCATACACACCCGCGTCGAGGATACGGCTTTCATCCGTTAACTGATCGAGGATCGCCTGAATGCGTTTTTCATCCGGTGAGTCGG > NC_000913/4624119‑4624593 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |