| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,624,226 | G→A | R188R (CGC→CGT) | ytjB ← | putative inner membrane protein Smp |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,624,226 | 0 | G | A | 91.2% | 75.9 / NA | 34 | R188R (CGC→CGT) | ytjB | putative inner membrane protein Smp |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (14/17); minor base T (0/3); total (14/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.51e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGGCATTGCGCCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGACATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTACCCTGTAGCAGC‑GTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAGTGTCAGGCGCAGATAGCCGAGCGGTCCGTTTTTACCCGCAATTGGCTCGACAATCTGCTGGTTAAAATAGCCGCCTGCTTTTTTACCGTCGAGCGCCAGCCGGTCGCG > NC_000913/4623994‑4624462 | cGGCATTGCGCCAGAGAAACAGAACGCGCTGCGTGGCGGGCATCTGGCGAAAAATACACTCCTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGACATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTTACAGGGAGGGCGCTTTCTACCAGCGGGGACGTTTACCCTTTagaagc > 1:350562/1‑251 (MQ=255) gcCATAGAAACAGAACGCGCTGCGTTGCGTGCATCTGGCGAAAAATACACTCCTCCCCCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGTCATAACGAGTTCCTTGCTTGTAGTAATGGGTCACGTTTTTTTCTCGCTTTCTTCCTCGTCCGGCTCCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGC‑GTGCGGGTc < 1:346677/251‑1 (MQ=255) gAACGCGCTGCGTGGCGGGCATCTGGCGAAAAATACACTCCTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGACATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGC‑GTGCGGGTCAGCACTACGCCg < 1:62461/251‑1 (MQ=255) actcgcTGCGGGGCGGGCATATGGCGAAAAATACACTCCGCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGACATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTGCTCGCGTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGC‑GTGCGGGTCAGCACTACGCCGAt < 1:371455/248‑1 (MQ=255) gCGTGGCGGGCATCTGGCGAAAAATACACTCCTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGACATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGC‑GTGCGGGTCAGCACTACGCCGATTGCCa < 1:236874/249‑1 (MQ=255) cGGGCATCTGGCGAAAAATACACTCCTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGACATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGC‑GTGCGGGGCAGCACTACGCCGGTTGCCCGTGAAagc > 1:136968/1‑251 (MQ=255) ggCATCTGGCGAAAAATACACTCCTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGACATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGC‑GTGCGGGTCAGCACTACGCCGATTGCCAGTGAAagcag < 1:294826/251‑1 (MQ=255) cgggctaaatatccactcctgcACCTCCAGTTTAAACCACTGGTCGTCTGAGTCAGAGGTGAGCAGGCGTAATGTGGACATAATGACTGCCTTTCTTGTAGTAATTGGTCACTCTTTTCTCTCTCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGGGAACAGGAAGGGCGATTGCTGCCAGCGGGTTCGTTTTCCCTGTAGCAGC‑GTGCTGGTCGGCACTTCGCCGATTTCCAGTGAAAGCAGCAACa < 2:293195/230‑1 (MQ=255) aaaaaTACACTCCTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGACATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGC‑GTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCAGGc < 1:24036/251‑1 (MQ=255) aaaaaTACACTCCTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGACGAGCAGCCGTAATGTGGACATAACGATTTCCTTTCTTGAAGTCATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAAAAGGGAGGGCGATTGCTTCCCACGGGCACGCTTACCCTGTACCAACAGTG‑GGGACAGCACTATGCCGAATGCCACTGAAagcagacaaaaacggc > 1:178749/1‑240 (MQ=255) aaaaTACACTCCTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGACATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGC‑GTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCAGGCg < 1:103993/251‑1 (MQ=255) aaaTACACTCCTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGACATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGC‑GTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCAGGCGt < 1:295635/251‑1 (MQ=255) cACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGACATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGGTAACAGGAAGGGCGCATGATGCCAGCGGGGACGGTTTCCCTGTGGCAGC‑GAGAGGGTCCGCACAACGCCGAGTGCCAGTTAAAGCAGCcacacacagcggaaaatgtgttggg > 2:13240/1‑230 (MQ=255) aCCACGGGTCGTAAGAGTCAGAGATGAGAAGGCGTAATGTGGACATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAAGGCGATTGCTGCCCGCGGGTACGGTTAACCCGGAGCAGA‑GTGCGGGGCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACCTCAGGCGGAAAATGTTCGTGGTGTTATCCCCCTGt > 1:267172/1‑251 (MQ=255) tGAGCAGGCGTAATGTGGACATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAAAAGGAAGGGCGATTGCTGCCAGCGGGTAAGTTTACCCTGTAGCAGC‑GTGCGGGGCAGCACTAAGCCGATTGCCCGTGAAAGCAGCAACATCAGGCGTAAAATTTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATgg > 1:193796/1‑251 (MQ=255) ggAGCAGGCGTAATGTGGACATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGC‑GTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATgg < 1:150865/250‑1 (MQ=255) cGTAATGTGGACATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGC‑GTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAg < 1:58377/251‑1 (MQ=255) aaCGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGC‑GGGCGGGGCAGCAATACGCCGAtt > 1:230215/1‑151 (MQ=255) aaCGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCGCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGTGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGC‑GTGCGGGTCAGCACTACGCCGAtt < 2:230215/151‑1 (MQ=255) aCGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGC‑GTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCCGGCGTAAAATGTTAGTGGGGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGGATGGGTGTCGAGGGTCAGGCGCCGAt > 1:25843/1‑250 (MQ=255) tttCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTAACCTGTAGCAGC‑GTGCGGGTCAGCACTACGCCGATTGCCCGAGAAAGCAGCAACATCAGGCGTAAAATGTTAGTGGGGTTATCCACCTGTTGGGCTTCGGTGGCGGGCGTATGGGGGTCGAGCGTCAGGCGCAGATAGCCg > 1:211911/1‑251 (MQ=255) ttttgtaATGGGTCCCTCTTTTTTCCCGCTTTCTGCTTCTTCCGGCACTGGTTTGCTGGCGGTTAACAGGAATGGAGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGC‑GTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCTCCTGTTGGGCTTGGGTGGCGAGCGTATGGGTGTCTAGCGTCAGGCGCAGATAGCCGAGCGGTcc < 2:143663/245‑1 (MQ=255) tGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGCTTTCTTCCCGCGGGGACGTTTTCCCTTTAGCAGC‑GTGCGGGGCAGCACTAAGCCCATTGCCAGTGAAAGCCGCAACAACAGGCGTAAAATGTTAGGGGTGGTTTCCCCCTGTTTGGGTTTGGTGGGGAGCGTATGGGGGGCGAGGGTCAGgcgctgggaggcgggcgggccgg > 2:195674/1‑232 (MQ=255) gttaaggtctcctcctTTTGTCTCCCTTTCTTCCTCTTCCTGCACCGGCTTGCTGGCGTTTCACAGGTATGGCTATTGCTTCCAGCGGGTACGTTTTCCCTGTATCAGC‑GTGCGGGTCAGCGCCACGCAGATGTCCAGTGAACGCAGCATCATCAGGCGTAAAATGTTAGTGGTGTTATCCTCCTGTTGGGCTTTGGTGGCGAGTGTATGGGTGTCGAGCGTCAGGTGCAGATTGCCGTGCGTTCCGtttt < 2:214738/237‑1 (MQ=255) ggTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGGAAGTTTACCCTGTAGCAGC‑GGGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACCTCCGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGGATGGGTGTCGGGCGTCAGGCGCAGATAGCCGGGCGGTCCGttttttccgac > 1:245741/1‑245 (MQ=255) ctgtgttcccGCTTTCTTCCTCTTCCGTCACCGGTTTGCTGGCGGTTAACAGGGAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGC‑GTGCGGGTCAGCACTTCGCCGATTGCCAGTGAAAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTGCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGTTTTTCCCGGCAATTg < 2:120173/240‑1 (MQ=255) ttCTCGCTTTCTTCCTCTTCCGGCCCCGGTTTGCTGGCGGGTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGC‑GTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGtttttcccgg < 2:296068/238‑6 (MQ=255) ttCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGC‑GTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCAGGCGGAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGGATGGGGGTCGAGCGTCCGGCGCAGATAGCCGGGCGGGCCGtttttcccggggatcgggagagg > 1:296068/1‑233 (MQ=255) ccggCTTTCTCCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGAGTGCTGCCAGCGGGTTCGTTTACCCTGTAGCAGC‑GTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGTTTTTCCCGGCAATTGGTTCGACaa < 2:129525/248‑1 (MQ=255) tcGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTTCCCTGTAGCAGC‑GTGCGGGTCAGCACTACGCCGGTTGCCAGTGAAAGCAGCAACATCCGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGGGCGTCAGGCGCAGATAGCCGCGCGGGCCGGTTTTCCCGGCGATTGGTTCGACAAt > 1:1916/1‑251 (MQ=255) cttcctcttccGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGC‑GGGCGGGTCCGCACTACGCCGATTGCCAGTGAAAGCAGCCACATCAGGCGTAAAATGTTAGGGGTGTTATCCACCTGTTGGGGTTCGGTGGCGAGCGTATGGGGGACGAGCGTCAGGCGCAGATAACCGAGCGGTCCGGTTTTCCCGGCAAATGGGTCGACAATCTGCTgg > 1:165534/1‑251 (MQ=255) ccgggCATCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTTCGTTTACCCGGTAGCAGC‑GTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTGCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGTTTTTCCCGGCAATTGGTTCGACAATCTGCTGGTGAAAATa < 2:165534/248‑1 (MQ=255) ccGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTACGTTTACCCTGTAGCAGC‑GTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGTTTTTCCCGGCAATTGGTTCGACAATCTGCTGGTTAAAATAgccgccc < 1:195674/251‑2 (MQ=255) gctgcCAGCGGGTACGTTTACCCTGTAGCAGC‑GTGCGGGTCAGCACTACGCCGATTGCCAGTGAAAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAGCGTCAGGCGCAGATAGCCGAGCGGTCCGTTTTTCCCGGCAATTGGTTCGACAATCTGCTGGTTAAAATAGCCGCCCGCTTTTTTACCGTCGAGCGCCAGCCGGTcgcg < 1:26192/250‑1 (MQ=255) | CGGCATTGCGCCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGACATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTACCCTGTAGCAGC‑GTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGTATGGGTGTCGAGTGTCAGGCGCAGATAGCCGAGCGGTCCGTTTTTACCCGCAATTGGCTCGACAATCTGCTGGTTAAAATAGCCGCCTGCTTTTTTACCGTCGAGCGCCAGCCGGTCGCG > NC_000913/4623994‑4624462 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |