| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 5,442 | T→C | L70P (CTA→CCA) | yaaX → | DUF2502 domain‑containing protein YaaX |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 5,442 | 0 | T | C | 81.8% | 40.4 / 0.1 | 22 | L70P (CTA→CCA) | yaaX | DUF2502 domain‑containing protein YaaX |
| Reads supporting (aligned to +/- strand): ref base T (1/3); new base C (12/6); total (13/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.22e-01 | |||||||||||
AACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTG‑GTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAAC‑AACATTATGAATGGCGAGGCAATCGCTGGCACCTACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTG > NC_000913/5207‑5677 | aaCGGGCAATGATAAAAGGAGTAACCTATGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTG‑GTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAAC‑AACATTATGAATGGCGAGGCAATCGCTGGCACCCACACGGACCgccgcc > 1:78663/1‑251 (MQ=255) aGTAACCTATGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTG‑GTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAAC‑AACATTATGAATGGCGAGGCAATCGCTGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATa > 1:334187/1‑249 (MQ=255) gAAAAAGATGCAAGCTATCGTACTCGCACGTTCCCTG‑GTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAAC‑AACATTATGAATGGCGAGGCAATCGCTGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGctcct < 1:32161/250‑1 (MQ=255) gATGCAATCTATCGCACCCGCACTTTCACTG‑GTTCTGGTCGCCCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAAC‑AACATTATGAATGGCGAGGCAATCGCTGGGACCTACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCATCATGatc < 1:155065/251‑1 (MQ=255) tCGCACTTTCCCTG‑GTTCTGGTAGCTCCCATGGCAGCACAGGCTGCGGAAATTCCGTTAGTCCCGTCAGTAAAATTACAGATCGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAAGTCACTGGCGCGACCACGGCTAGTGGAAAC‑AACATTATGAATGGCGAGGCCAGCGCTGGCACCCACAAGGCACGCCGCCACCGCCCGGCCACCATAAGACAGATCCTCATGCTCATCAcggcgcaaacggc > 2:48656/1‑243 (MQ=255) ccgcccttCCCTGTGTTCTGGGCGCTCCCAGGGCAGCACAGGCTTCGGAAATTACGTTAGTCCCTTCAGTAAAATTACAGAGAGGCGAGCGTGATAATCGTGGCTATTACGGGGATGGAGGTCACTGGCGCGACCACGGCTGGGGAAAAC‑AACATTATGAATGGCGAGGCAATCGCTGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATgg < 2:334187/244‑1 (MQ=255) gcccttccccTG‑GTTCGGGTCGCTCCCATGGCATCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGAGAGGGGATCGTGATAATCGGGGCTATTACGGGGAGGGAGGTCACTGGCGCGACCCCGGC‑GGGGGAAACCAACATTAGGAAGGGCGAGGCAAACGCTGGCCCCTACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTcc < 2:73576/244‑1 (MQ=255) gCACTTTCCCTG‑GTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAAC‑AACATTATGAATGGCGAGGCAATCGCTGGCACCTACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCCTgggcc > 1:73576/1‑248 (MQ=255) ccTG‑GTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAAC‑AACATTATGAATGGCGAGGCAATCGCTGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGTCGGGCATAGTCCAGGCCAAc > 1:3504/1‑251 (MQ=255) ggtcgccccaaaggCAGCACGGGCTGGGTAAATTACGTTAGTCCCTTCAGTAAAATTACAGATAGGGTATCGTGATAAACGTGGCGATTACTGGGATGGAGGTCACTGGCGCGACCCCGGCTGGTGGAAAC‑AACATTATGAATGGCGAGTCAATCGCTGGCCCCCACAGGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCt < 2:78663/239‑1 (MQ=255) acaGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAAC‑AACATTATGAATGGCGAGGCAATCGCTGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCCAGGGCCAGGCAAAAATAACCGCCAAAAGAAAAAAGCCgggg > 1:44987/1‑250 (MQ=255) gcttgggAAATTTCGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGTGGCGACCACGGCTGGTGGAAAC‑AACATTATGAATGGCGAGGCAATCGCTGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACa < 1:313329/246‑1 (MQ=255) aCGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCGGGTGGAAAC‑ACCAGTATGAATGGCGAGGCAATCGCGGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCa < 1:47793/251‑1 (MQ=255) gTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAAC‑AACATTATGAATGGCGAGGCAATCGCTGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGGCCAGGCCAACATCACCCCTAAAATACAAAAGCCGGGGAACCATCCGGCATTCAGCGccc > 1:178402/1‑250 (MQ=255) gTCAGTAAAATTACAGAGAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAAC‑AACATTATGAATGGCGAGGCAATCGCTGGCACCTACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGc < 1:142080/251‑1 (MQ=255) aCAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAAC‑AACATTATGAATGGCGAGGCAATCGCTGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCCCCAAATGACAAATGCCGGGGAACAATCCGGCATTCAACGCCCGATGCGACGCTGGcgcg > 1:188050/1‑251 (MQ=255) gCGATCGTGAGACTCGTGGCTATTCCGGGGATGGAGGTCACGGGCGCGCCCCGGGCGGGTGGAAAC‑AACATTAGGAAGGGCGAGCAAATCGTTGGCACCCACCCGGCCCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCa < 2:178402/251‑1 (MQ=255) aGGTCACTGGCGCGACCACGGCTGGTGGAAAC‑AACATTATGAATGGCGAGGCAATCGCTGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTGAATTCTGCCATATATTTAATCTGc > 1:347576/1‑251 (MQ=255) ggAAAC‑AACATTATGAATGGCGAGGCAATCGCTGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGGCATGGGCCAGGGAAACATCACCGCTAAATAACAAAAGCCGGGGAAAAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTGATTCTGCAATATATTTAAACTGCATGCTTTTGTAGGCCGGGTAAGGCgg > 1:213523/1‑250 (MQ=255) c‑aacaTTATGAATGGCGAGGCAATCGCTGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCCAACATCACCGCTAAATGACAAAAGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAGTGAATTCTGCAATATATTGAATTTGCAAGATTTTGTAgggcgggtaagggggtcacg > 1:377747/1‑233 (MQ=255) tATGAATGGCGAGGCAATCGCTGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACCAATGCCGGGTAACAATCCGGCATTCAGCGCCCGATGCGACGCTGGGGCGTCTTATCAGGCCTACGTGAATTCTGCAATATATTGAATCTGCATTCTTTTGTAGGccggcaaaggcggttacgccccat > 1:1491/1‑228 (MQ=255) gCAATCGCTGGCACCCACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACACCACCGCTAAAAGACAAATGCCGGGTAACAATCCGGCATTCAACGCCCGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTGGATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTGACTg > 1:254156/1‑251 (MQ=39) | AACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTG‑GTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCACTGGCGCGACCACGGCTGGTGGAAAC‑AACATTATGAATGGCGAGGCAATCGCTGGCACCTACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTG > NC_000913/5207‑5677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |