| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,623,707 | G→T | G137G (GGC→GGA) | lplA ← | lipoate‑‑protein ligase A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,623,707 | 0 | G | T | 88.2% | 78.1 / 1.4 | 34 | G137G (GGC→GGA) | lplA | lipoate‑‑protein ligase A |
| Reads supporting (aligned to +/- strand): ref base G (3/1); new base T (17/13); total (20/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.27e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.08e-01 | |||||||||||
GCTCGCCATAATGGGCGAAAAAGGCCTCGGTTATGGCCTCGCAAACCTGCTCATGGGTGATCCCCGGCAACAGCTCGGTGAGGTTGGTCACGCGGGAACGTACCGACGTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTG‑GAAGCCGCGATCTTTGGTTTCGCGATAGGCCGAGCCTGAGACTTTGCGGTCGCCTTCGACGGTTTTCACCACCAGATCGTTACGTCCGGACGCTTCGGCGCTGACGCCGAGCGCGTTCAGCGCATTGAGCACAATCGACGTGGAGATAGTTTTATCGTACTCCGGCTTGCCAGCCATAAAGGTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTT > NC_000913/4623475‑4623957 | gcTCGCCATAATGGGCGAAAAAGGCCTTGGTTATGGCCTCGCAAACCTGCTCATGGGTGATCCCCGGCAGCAGCTCGGTGAGGTTGGTCACGCGGGAACGCACTGAGGTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTAAGGTCGGCATTGAGCAGCAAGGTGCCGTGGTG‑GAAGCCACGATCTTTGGTTTCGCGATAGGCCGATCCTGAGACTTTGCGGTCg > 1:348907/1‑251 (MQ=255) ggggCGAAAAAGGCCTTGGTTATGGCCTCGCAAACCTGCTCATGGGTGATCCCCGGCAGCAGCTCGGTGAGGGTGGTCACGCGGGAACGCACTGATGTAATGCCTTGCGCCGCCAGTTGCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTAAGGTCGGCATTTAGCAGCAAGGTGCCGTGGTG‑GAATCCACGATCTTTGGTTTCGCGATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGt < 1:36970/250‑1 (MQ=255) aaaaGGCCTTGGTTATGGCCACGCAAACCTGCTCATGGGTGATCCCCGGCAGCAGCTCGGTGAGGTTGGTCCCGCGGGAACGCACTGAGGTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGAAAGGTTGCCAGGCGCCTAGGGTCGGCATTGAGCAGCAAGGTGCCGTGGTG‑GGAGCCCCGATCTTTGGATTCGCGATAGGCCGCTCCTGAGACTTAGCGTTCGCCTTCGGCGGgttttatc > 2:128382/1‑247 (MQ=255) gCCTTGGTTATGGCCTCGCAAACCTGCTCATGGGTGATCCCCGGCAGCAGCTCGGTGAGGTTGGTCACGCGGGAACGCACTGAGGTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTAAGGTCGGCATTGAGCAGCAAGGTGCCGTGGTG‑GAAGCCACGATCTTTGGTTTCGCGATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTGaccacc > 1:201457/1‑249 (MQ=255) gCAAACCTGCTCATGGGTGATCCCCGGCAGCAGCTCGGTGAGGTTGGTCACTCGGGAACGCACTGAGGTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTAAGGTCGGCATTGAGCAGCAAGGTGCCGTGGTG‑GAAGCCACGATCTTTGGTTTCGCGATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTTACCCCCCGATCGTTACGCCCGGa > 1:124009/1‑249 (MQ=255) aaaCCTGCTCATGGGTGATCCCCGGCAGCAGCTCGGTGAGGTTGGTCACGCGGGAACGCACTGAGGTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTAAGGTCGGCATTGAGCAACAAGGTGCCGTGGTG‑GAAGCCACGATCTTTGGTTTCGCGATAGGCCGATCCTGAGCCTTTGCGGTCGCCTTCGGCGGTTTTCCCCACCAGATCGTATCGTCCGGCCGcc > 2:9489/1‑250 (MQ=255) aaCCTGCTCATGGGTGATCCCCGGCAGCAGCTCGGTGAGGTTGGTCACGCGGGAACGCACTGAGGTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTAAGGTCGGCATTGAGCAGCAAGGTGCCGTGGTG‑GAAGCCACGATCTTTGGTTTCGCGATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTCACCACACGATCGTTACGCCCGGACGCtt > 1:5892/1‑251 (MQ=255) cATGGGTGATCCCCGGCAGCAGATCGGAGAGGTTGGTCACGCGGGAACGCACTGAGGTACTGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTAAGGTCGGCATTGAGCAGCAAGGTGACGTGGTG‑GAAGCCACGATCTTTGGTTTCGCGATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTTCCCACCAGATCGTTGCGCCCGGACGCTTCCGCGCTg > 2:191468/1‑251 (MQ=255) cATGGGTGATCCCCGGCAACAGCTCGGTGAGGTTGGTCACGCGGGAACGTACCGACGTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCTGTGGTG‑GAAGCCGCGATCTTTGGTTTCGCGATAGGCCGAGCCTGAGACTTTGCGGTCGCCTTCGACGGTTTTCACCACCAGATCGTTACGTCCGGACGCTTCGGCGCTg > 1:72714/1‑251 (MQ=255) ccGGCAGCAGCTCTGTGAGGTTGGTCACGCGTGCACGGACTGAGGTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGAGATGTTGCCAGGCGGCTAAGGTCGGCATTGAGCAGCAAGGTGCCGTGGTG‑GACGCCACGATCTTTGGTTTCGCGATAGGCCGATCCTGAGACGTTGCGGTCGCCTTCGGCGGTTGTCACCACCAGATCGTTACGCCCGGACGCTTCGGCGTTGACGCCAAGcgcg < 2:205750/251‑1 (MQ=255) cACGCGGGAACGCACTGAGGTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTAAGGTCGGCATTGAGCAGCAAGGTGCCGTGGTG‑GAAGCCACGATCTTTGGTTTCGCGATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTCACCACCAGATCGTTACGCCCGGACGCTTCGGCGCTGACGCCAAGCGCGTTCAGCGCATTGAGCACAATCGACg < 1:363643/251‑1 (MQ=255) aacgcactgaggTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTAAGGTCGGCATTGAGCAGCAAGGTGCCGTGGTG‑GAAGCCACGATCTTTGGTTTCGCGATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTCAACCCCAGAACGTTACGCCCGGGCGCTTCGGCGCTTGCGCCAAGAGCGGTCAGCGCATTGAGCACCATCGGCGttgaagtg > 1:270265/12‑244 (MQ=255) actgaggTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTAAGGTCGGCATTGAGCAGCAAGGTGCCGTGGTG‑GAAGCCACGATCTTTGGTTTCGCGATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTCACCACCAGATCGTTACGCCCGGACGCTTCGGCGCTGACGCCAAGCGCGTTCAGCGCATTGAGCACAATCGACGTGGAGATGGtttt < 1:97883/245‑1 (MQ=255) aCCGACGTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTG‑GAAGCCGCGATCTTTGGTTTCGCGATAGGCCGAGCCTGAGACTTTGCGGACGCCTTCGACGGTTTTCACCACCAGCTCGTTACGTCAGGACGCTTCGGCGCTGACGCCGAGCGCGTTCAGCGCATTTAGCCAAATCGACGAGGAGATAGtttt > 2:162065/1‑251 (MQ=255) tggggTAATGCCTTTCTCCTCCAGGTGCTTTTTATCCGGATTGCGATAGTTTGCCCGGCTGCTAAGGTCGGCATTGAGCATACAGGTGCCGTGGTG‑GAAGCCACGATCTTTGGTTTCGCGATAGGCCGTTCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTCACCACCAGATCGTTACGCCCGGACGCTTCGGCGCTGACGCCAAGCGCGTTCAGCGCATTGAGCACAATCGACGTTGAGATGGtttt < 2:226441/245‑1 (MQ=255) tgaggTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTAAGGTCGGCATTGAGCAGCAAGGTGCCGTGGTG‑GAAGCCACGATCTTTGGTTTCGCGATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTCACCACCAGATCGTTACGCCCGGCCGCTTCGGCGCTGACGCCAAGCGCGGTCAGCGCATTGAGCACAATCGACGTGGAGAtgggttttt > 1:27255/5‑243 (MQ=255) ccAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTAAGGTCGGCATTGAGCAGCAAGGTGCCGTGGTG‑GAAGCCACGATCTTTGGTTTCGCGATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTCACCACCAGATCGTTACGCCCGGACGCTTCGGCGCTGACGCCAAGCGCGTTCAGCGCATTGAGCACAATCGACGTGGAGATGGTTTTATCGTACTCCGGCTTgccagcc > 1:39410/1‑251 (MQ=255) aGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTG‑GAAGCCGCGATCTTTGGTTTCGCGATAGGCCGAGCCTGAGACTTTGCGGTCGCCTTCGACGGTTTTCACCACCAGATCGTTACGTCCGGACGCTTCGGCGCTGACGCCGAGCACGTTCAGCGCATTGAGCACAATCGCCGTGGAGATAGCTTTATCGTACTCCGGCTTgccagccc > 2:141610/1‑249 (MQ=255) ggATTGAGATAGTTTGCCAGGCGGCTAAGGTCGGCATTGAGCAGCAAGGTGCCGTGGTG‑GAAGCCACGATCTTTGGTTTCGCGATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTCACCACCAGATCGTTACGCCCGGACGCTTCGGCGCTGACGCCAAGCGCGTTCAGCGCATTTAGCACCATCGACGTGGAGATGGGTTTATCGTACTCCGGCTTGCCAGCCATAAAGGTAAAGCAggg > 1:113825/1‑250 (MQ=255) ttGCCAGGCGGCTAAGGTCGGCATTGAGCAGCAAGGTGCCGTGGTG‑GAAGCCACGATCTTTGGTTTCGCGATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTCACCACCAGATCGTTACGCCCGGACGCTTCGGCGCTGACGCCAAGCGCGTTCAGCGCATTGAGCACAATCGACGTGGAGATGGTTTTTTCGTACTCCGGCTTGCCAGCCATAAAGGTAAAGCAGGTATTGccc > 1:25167/1‑244 (MQ=255) gCCAGGCGGCTAAGGTCGGCATTGAGCAGCAAGGTGCCGTGGTG‑GAAGCCACGATCTTTGGTTTCGCGATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTCACCACCAGATCGTTACGCCCGGACGCTTCGTCGCTGACGCCAAGCGCGTTCAGCGCATTGAGCACAATCGACGTGGAGATGGTTTTATCGTAATCCGGCTTGCCAGACATAAAGGTAAAGCAGGTATTTCCGAGATCGt < 1:90585/250‑1 (MQ=255) aaGGTCGGCATTGAGCAGCAAGGTGCCGTGGTG‑GAAGCCACGATCTTTGGTTTCGCGATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTCACCACCAGATCGTTACGCCCGGACGCTTCGGCGCTGACGCCAAGCGCGTTCAGCGCATTGAGCACAATCGACGTGGAGATGGTTTTATCGTACTCCGGCTTGCCAGCCATAAAGGTAAAGCAGGTATTGCCGAGATCGTGGAACAcc < 1:273479/246‑1 (MQ=255) aaGGTCGGCATTGAGCAGCAAGGTGCCGTGGTG‑GAAGCCACGATCTTTGGTTTCGCGATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTCACCACCAGATCGTTACGCCCGGACGCTTCGGCGCTGACGCCAAGCGCGCTTAGGGCCTTGAGCACAAACGCCGTGGAGATGGGTTTATCGTACTCCGGCTTGCCAGCCATAAAGGTAAAACACGTATTGCCggagtcgtggaccaacagct > 2:273479/2‑232 (MQ=255) ggCATTGAGCAGCAAGGTGCCGTGGTG‑GAAGCCACGATCTTTGGTTTCGCGATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGCTTTTCACCACCAGATCGTTACGCCCGGACGCTTCCGCGCTGACGCCAAGCGCGTTCAGCGCCTTCAGAACCATCGACGTGGAGATGGTTTTATCGTACTCCGGCTTTCCAGCCATAAAGGTAAAGCAGGTATTGCCGAGATCGTGGAACAACGCGCCGCCAc > 1:381936/1‑251 (MQ=255) gaaTTGAGCACCAAGGTGGCG‑GGTGTGAAGCCACGTTATTTGGTTTCGCGATAGGCCTATCCTGAGACTTTGCGGTCGCCGTCGGCGGTTTTCACCACCAGATCGTTACGCCCGGACTCTTCGGCGCGTACGACAAGCGCGTTCAGCGCATTGAGCACAATCGACGTGGAGATGGTTTTATCGTATTCTGTCTTGCCAGCCATAAAGGTAAAGCAGGTATTGCCGTGATCGTGGAACACCCCGCCGCCAcc < 2:251072/249‑1 (MQ=255) ggtaggccacgATCTTTGGTTTCGGGATAGGCCGAGCCTGAGACTGTGCGGCCGCCTGCGGCGGTTTTCACCACCAGATCGTTACGCCCGGTCGCTTCGGCGCTGACGCCAAGCGCGGTCAGCGCATTGAGCTCAATCGACGTGGAGATGGTTTTATCGTACTCCGGCTTGCCAGCCATAAAGGTAATGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCAGTGCCAGGCgtac < 2:27255/242‑4 (MQ=255) aaGCCACGATCTTTGGTTTCGCGATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTCACCACCAGATCGTTACGCCCGGACGCTTCGGCGCTGACGCCAAGCGCGTTCAGCGCATTGAGCACAATCGACGTGGAGATGGTTTTATCGTACTCCGGCTTGCCAGCCATAAAGGTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGTGCCAGGCGGACGtt < 1:290664/251‑1 (MQ=255) cgATCTTTGGTTTCGCGATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTCACCACCAGATCGTTACGCCCGGACGACTCGGCGCTGACGCCCAGCGCGTTCAGCGCATTGAGCACAATCGACGTGGAGATGGGTTTATCGTACTCCGGCTTGCCAGCCATAAAGGTAAAGCAGGAATTTCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGTGCCAGGCGGACGTTAtattc > 1:293195/1‑251 (MQ=255) ttGGTTTCGCGATAGGCCGATCCTGAGACTGTGCTGTCGCCTGCGGCGGTTTTCACCACCAGATCGTTACGCCCGGACGCTTCGGCGCTGACGCCAAGCGCGGTCAGCGCATTGAGCACAATCGACGTGGAGATGGTTTTATCGTACTCCGGCTTGCCAGCCATAAAGGTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGTGCCAGGCGGACGTTATcttctt < 1:184171/247‑1 (MQ=255) tttCGCGATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTCACCACCAGATCGTTACGCCCGGACGCTTCGGCGCTGACGCCAAGCGCGTTCAGCGCATTGAGCACAATCGACGTGGAGATGGTTTTATCGTACTCCGGCTTGCCAGCCATAAAGGTAAAGCAGGTATTGCCGAGATc < 1:327834/187‑1 (MQ=255) tttCGCGATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTCACCACCAGATCGTTACGCCCGGACGCTTCGGCGCTGACGCCAAGCGCGTTCAGCGCATTGAGCACAATCGACGTGGAGATGGGTTTATCGTACTCCGGCTTGCCAGCCATAAAGGTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGTGCCAAGCGGACGTTATCTTCTTCCATccgc > 1:120173/1‑251 (MQ=255) cgcgATAGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTCACCACCCAATCGTTACGCCCGGACGCTTCGGCGCTGACGCCAAGCGCGTTCAGCGAATTGAGCACAATCGACGTGGAGATGGTTTTATCGTACTCCGGCTTGCCAGCCATAAAGGTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCCCCGCTACTGCGCCGTGCCAGGCGGACGTTATCTTCTTCCAACCGCCgg > 1:185510/1‑251 (MQ=255) aGGCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTCACCACCAGATCGTTACGCCCGGACGCTTCGGCGCTGACGCCAAGCGCGTTCAGCGCATTGAGCACAATCGACGTGGAGATGGTTTTATCGTACTCCGGCTTGCCAGCCATAAAGGTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGTACCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTa < 1:129295/251‑1 (MQ=255) gCCGATCCTGAGACTTTGCGGTCGCCTTCGGCGGTTTTCACCACCAGATCGTTACGCCCGGACGCTTCGGCGCTGACGCCAAGCGCGTTCAGCGCATTGAGCACAATCGACGTGGAGATGGTTTTATCGTACTCCGGCTTGCCAGCCATAAAGGTAAAGCAGGTATTGCCGAGATCGTGGAacac < 1:303257/185‑1 (MQ=255) gCCTGAGACTTTGCGGTCGCCTTCGACGGTTTTCACCACCAGATCGTTACGTCCGGACGCTTCGGCGCTGACGCCGAGCACGTTCAGCGCATTGAGCACAATCGACGTGGAGATAGCTTTATCGTACTCCGGCTTGCCAGCCATAAAGGTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCtt < 1:141610/251‑1 (MQ=255) | GCTCGCCATAATGGGCGAAAAAGGCCTCGGTTATGGCCTCGCAAACCTGCTCATGGGTGATCCCCGGCAACAGCTCGGTGAGGTTGGTCACGCGGGAACGTACCGACGTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTG‑GAAGCCGCGATCTTTGGTTTCGCGATAGGCCGAGCCTGAGACTTTGCGGTCGCCTTCGACGGTTTTCACCACCAGATCGTTACGTCCGGACGCTTCGGCGCTGACGCCGAGCGCGTTCAGCGCATTGAGCACAATCGACGTGGAGATAGTTTTATCGTACTCCGGCTTGCCAGCCATAAAGGTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTT > NC_000913/4623475‑4623957 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |