| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,620,652 | C→T | C350C (TGC→TGT) | deoB → | phosphopentomutase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,620,652 | 0 | C | T | 90.6% | 71.0 / 0.2 | 32 | C350C (TGC→TGT) | deoB | phosphopentomutase |
| Reads supporting (aligned to +/- strand): ref base C (1/2); new base T (9/20); total (10/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.92e-01 | |||||||||||
TATCACCAAAAAAGTGAAAGCGACTGGCCTGGACGCGCTGTTTGACGCCACCATCAAAGAGATGAAAGAAGCGGGTGATAACACCATCGTCTTCACCAACTTCGTTGACTTCGACTCTTCCTGGGGCCACCGTCGCGACGTCGCCGGTTATGCCGCGGGTCTGGAACTGTTCGACCGCCGTCTGCCGGAGCTGATGTCTCTGCTGCGCGATGACGACATCCTGATCCTCACCGCTGACCACGGTTGCGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTATATGGCCCGAAAGTAAAACCGGGCTCACTGGGTCATCGTGAAACCTTCGCGGATATCGGCCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATGGATTTGGGCGGAGCGTTGACTCCGCCTTTGTTATGTCACAAAAAGGATAAAACAATGGCTACCCCA > NC_000913/4620406‑4620894 | tATCACCAAGAAAGTGAAAGCAACTGGCCTGGACGCGCTGTTTGACGCCACCATCAAAGAGATGAAAGAAGCGGGTGATAACACCATCGTCTTCACCAACTTCGTTGACTTCGACTCTTCCTGGGGCCACCGTCGCGACGTCGCCGGTTATGCTGCGGGTCTGGAGCTGTTCGACCGCCGTCTGCCGGAGCTGATGTCTCTGCTGCGCGATGACGACATCCTGATCCTCACTGCTGACCACGGTTGTGATc > 1:322595/1‑251 (MQ=255) aaaGCCACTTGCCTGGCAGCGCGGTTTGACGCCAACATCAAAGAGATGAAAGAAGCGGGTGATCACACCACCGTCTTCCCCAACTTCGATGATTTCGACTCTTCCTGGTGCCCCCGTCGCGACGTCTCCGGTTATGCTGCGGGTTTGGAGCTGTTCGACCTCCGTCTGCCGGAGCTGATGTCTCTGCTGCGCGATGCCGACATCCTGATCCTCACTGCTGAACACGGTTGTGATCCGACCTGGACCGGTAc < 2:313362/251‑1 (MQ=255) aaCTGGTCTGGACGCGCTGTGTGACGCCACCATCAAAGAGATGAAAGAAGCGGGTGTTAACACCATCGTCTTCACCAACTTCGTTGACTTCGACTCTTCCTGGGGCCACCGTCGCGACGTCGCCGGTTATGCTGCGGGTCTGGAGCTGTTCGACCGCCGTCTGCCGGAGCTGATGTCTCTGCTGCGCGATGACGACATCCTGATCCTCACTGCTGACCACGGTTGTGATCCGACCTGGACCGTTACTGAcc < 2:53314/250‑1 (MQ=255) ggCCTGGACGCGCTGTTTGACGCCACCATCAAAGAGATGAAAGAAGCGGGTGATAACACCATCGTCTTCACCAACTTCGTTGACTTCGACTCTTCCTGGGGCCACCGTCGCGACGTCGCCGGTTATGCTGCGGGTCTGGAGCTGTTCGACCGCCGTCTGCCGGAGCTGATGTCTCTGCTGCGCGATGACGACATCCTGATCCTCACTGCTGACCACGGTTGTGATCCGACCTGGACCGGTACTGACcaca < 1:342911/250‑1 (MQ=255) cGCCACCATCAAAGAGATGAAAGAAGCGGGTGATAACACCATCGTCTTCACCAACTTCGTTGACTTCGACTCTTCCTGGGGCCACCGTCGCGACGTCGCCGGTTATGCTGCGGGTCTGGAGCTGTTCGACCGCCGTCTGCCGGAGCTGATGTCTCTGCTGCGCGATGACGACATCCTGATCCTCACTGCTGACCACGGTTGTGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTAc > 1:365885/1‑251 (MQ=255) caTCAAAGAGATGAAAGAATCGGTTGATAACCCCAGCGTCGACTCCAACTTCGTTGACTTCGAATCTTCCTGGGGCCACCGTCGCGACGTCGCCGGTTATGCTGCGGGTCTGGAGCTGTTCGGCCTCCGTCTGCCGGATCTGATGGCTCTGCTTCGCGATGACGACATCCTGATCCTCACTGCTGACCACGGTTGTGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACAGTCCGGTACTGGttt < 2:322595/251‑3 (MQ=255) aTCAAAGAGAAGAAAGAAGCGGGTGATAACACCATCGTCTTCACCAACTTCGTTGACTTCGACTCTTCCTGGGGCCAGCGTCGCGACGTCGCCGGTTATGCTGCGGGTCTGGAGCTGTTCGACCGCCGTCTGCCGGAGCTGATGTCTCTGCTGCGCGATGACGTCATCCTGATCCTCACTGCTGACCACGGTTGTGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGttta < 1:47358/251‑4 (MQ=255) acaataagaTGAAAGAATGGGTTGATAACGCCATCGTCTTCACCAACTTCGTTGTCTTCGACTCTTCCTGGGGCCCCCGTCGCGACGTCGCCGGTTATGCTTCGGGTCTGGAGCTGTTCGGCCGCCGTCTGCCGGCGCTGATGTCTCTGCTGCGCGATGACGACATCCTTATCCTCACTGCTGACCACGGTTGTGATCCGTCCTGGACCGGTACTGACCACACTCGTGAACACATTCCGGTAcggggttac < 2:159809/245‑9 (MQ=255) tcgataaaaGAAACGGGAGATAACACCATCGTCTTCCCCAACTTCGTTGACTTCGACTCTTCCTGGGACCACCGTCGCGACGTCGCCGGTTATGCTGCTGGACTGGAGCTGTTCGACCGCCGTCTGCCGGAGCTGATGTCTCTGCTGCGCGGAGACGACATCCTGATCCTCAGTGAGGACCACGGGTGTGATCCTGCCTGGACCGTGACTGACCACACGCGTGAACACATTCCGGTACTgggttacggacc > 2:71523/7‑241 (MQ=255) gagaTGAAAGAAGCGGGTGATAACACCATCGTCTTCACCAACTGCGTTGACTTCGACTCTTCCTGGGGCCACCGGCGCGACGTCGCCGGTTATGCTGCGGGTCTGGAGCTGTTCGACCGCCGTCTGCCGGAGCTGATGTCTCTGCTGCGCGATGACGACATCCTGATCCTCACTGCTGACCACGGTTGTGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTTTACGGccc < 1:57351/251‑1 (MQ=255) gggTGATAACACCATCGTCTTCACCAACTTCGTTGACTTCGACTCTTCCTGGGGCCACCGTCGCGACGTCGCCGGTTATGCTGCGGGTCTGGAGCTGTTCGACCGCCGTCTGCCGGAGCTGATGTCTCTGCTGCGCGATGACGACATCCTGATCCTCACTGCTGACCACGGTTGTGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTTTACGGCCCGAAAGTAAAACCgg > 1:137656/1‑251 (MQ=255) gggTGATAACACCAGCGTCTTCACCACCTTCGTTGACTTCGACCCTTCCTGGGGCCACCGTCGCGACGTCGCCGGTTATGCTGCGGGTCTGGAGCTGTTCGACCGCTGTCTGCCGGAGCTGATGTCTCTGCTGCGCGATGACGACATCCTGATCCTCACTGCTGACCACGGTTGTGATCCGACCTGGATCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTTTACGGCCCGAAAGTAAAACCgg < 1:71523/251‑1 (MQ=255) aTAACACCATCGTCTTCACCAACTTCGTTGACTTCGACTCTTCCTGGGGCCACCGTCGCGACGTCGCCGGTTATGCTGCGGGTCTGGAGCTGTTCGACCGCCGTCTGCCGGAGCTGATGTCTCTGCTGCGCGATGACGACATCCTGATCCTCACTGCTGACCACGGTTGTGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTTTACGGCCCGAAAGTAAAACCGGGCTCa < 1:38140/251‑1 (MQ=255) ccccATCGTCTTCCCCAACGTCGTTGATTTCGACTCCTCCTGGGGCCACCGGCGCGACGTCGCCGGTTATTCTGCGGGTCTGGTGCGTTTCGACCGCCGTCTGCCGGAGCTGATGGCTCTGCTGCGCGATGACGACATCCTGATCCTCACTGCTGACCACGGTTGTGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTTTACGGCCCGAAAGTAAAACCGGGCTCACTgg < 2:291890/249‑1 (MQ=255) gTCTTCACCAACTTCGTTGACTTCGACTCTTCCTGGGGCCACCGTCGCGACGTCGCCGGTTATGCTGCGGGTCTGGAGCTGTTCGACCGCCGTCTGCCGGAGCTGATGTCTCTGCTGCGCGATGACGACATCCTGATCCTCACTGCTGACCACGGTTGTGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTTTACGGCCCGAAAGTAAAACAGGGCTCACTGGGTCaccg > 1:216077/1‑248 (MQ=255) ccACCAACTGCTTTGATTTCGACCATGCCTGGGGCCCCCGTCGCGACGTCGCCGGTTAGTCTGCGGGTCTTGAGCTGTTCGACCTCCGTCTGCCGGAGCGGAGGTCTCTGCTGCGCGATGACGTCATCCTGATCCTCACTGCTGACCACGGTTGTGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACAGTCCGGTACTGGTTTGCGGCCCGAAAGTAAAACCGGGCGCACTTGGTCACCGTg < 2:350041/248‑1 (MQ=255) cacttcggtgtgttCGGCTCTTCCCGGGGCCACCTACGGGACGTCGCAGGTTATGCTGCTGGTCTGGAGCTGTTCGACCGCCGTCTGCCGGAGCTGATGTCTCTGCTGCGCGATGACGACAGCCTGATCCTCACTGCTGTACACGTTTGTGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTTTACGGCCCGAAAGTAAAACCGGGCTCACTGGGTTACCGTGAAACCtt < 2:55212/239‑1 (MQ=255) aCTTCGTTGACTTCGACTCTTCCTGGGGCCACCGTCGCGACGTCGCCGGTTATGCTGCGGGTCTGGAGCTGTTCGACCGCCGTCTGCCGGAGCTGATGTCTCTGCTGCGCGATGACGACATCCTGATCCTCACTGCTGACCACGGTTGTGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTTTACGGCCCGAAAGTAAAACCGGGCTCACTGGGTCACCGTGAAACCTTc < 1:46653/251‑1 (MQ=255) tcggtgtcttggACTCTGCCTGGGGCCACCGTCGCGACGTCGCCGGTTATGCGGCGGGTCTGGAGCTGTTCGACCGCCGTCTGCCGGAGCTGATGTCTCGGCTGCGCGATGACGACATCCTGATCCTCACTGCGGACCACGGTTGTGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTTTACGGCCCGAAAGTAAAACCGGGCTCACTGGGTCACCGTGAAACCTTc < 2:83880/237‑1 (MQ=255) cGTTGACTTCGACTCGTCCTGGGGCCACCGTCGCGACGTCGCCGGTTATGCTGCGGGTCTGGAGCTGATCGACCGCCGTCTGCCGGAGCTGCTGGCTCTGCTGCGAGATGACGACAGCCTGATCCTCACTGCTGACCACGGTTGTGATCCGACCTGGACCGGTACTGACAACCCGCGTGCACACTTTCAGGTACTGGCTGACAGCCCGAAAGGAAAACAGGGCTCACTGGGGCAACATGAAACCTACGCgg > 2:194992/1‑251 (MQ=255) tGACTTCGACTCTTCCTGGGGCCACCGTCGCGACGTCGCCGGTTATGCTGCGGGTCTGGAGCTGTTCGACCGCCGTCTGCCGGAGCTGATGTCTCTGCTGCGCGATGACGACATCCTGATCCTCACTGCTGACCACGGTTGTGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTTTACGGCCCGAAAGTAAAACCGGGCTCACTGGGTCACCGTGATACCTTCGCggca > 1:35403/1‑248 (MQ=255) tgccTGTGGCCACCTTCGCGGCGTGATCGGTTATGCTGCGGGGCTGTTGCTGGTCGACCGCAGTCTGCCGGAGTGGATGTCTCTGCTGCGCGATGACGACATCCTGCTCCTCACTGCTGACCACGGTTGTGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTTTACGGCCCGAAAGTAAAACCGGGCTCACTGGGTCACCGTGAAACCTTCGCGGATATTGGTCAGAct < 2:306294/248‑1 (MQ=255) cggtggctgTTATGCGTCGGGTCTGGTGCTGTTCTACCGCCGGCTGCCGGAGCTGATGTCTCTGTTGCGCGATGACGACATCCTGATCCTCACTGCTGACCACGGTTGTGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTTTACGGCCCGAAAGTAAAACCGGGCTCACTGGGTCACCGTGAAACCTTCGCGGATATTGGTCAGACTCTGGCAAAATATTTTGGTACtt < 2:311224/243‑1 (MQ=255) ggatcTGTTCGACCGCCGTCTGCCGGAGCTGATGTCTCTGCTGCGCGATGACGACATCCTGATCCTCCCCGCTGACCACGGTTGCGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTATATGGCCCGAAAGTAAAACCGGGCTCACTGGGTCATCGTGAAACCTTCGCGGATATCGGCCAGACTCTGGCAAAAGATTTTGGTACTTCTGATATGGGATATGGCAAAGc < 1:87469/245‑1 (MQ=255) tttCGACCGCCGTCGGCCGGAGCTGATGTCTCTGCTGCGCGATGACGACACCCTGATCCTCACTGCTGACCACTGTTGTGATCCGACCTGGTCCGGTACTGACCTCACTCGTGAACTCATTCCGGTACTGGTTTACGGCCCGAAAGTAAAACCGGGCTCACTGGGTCACCGTGAAACCTTCGCGGATATTGGTCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTc < 1:384064/249‑1 (MQ=255) tcgcacgccgTCTGCCGTATCTGATGTCTCCGCAGCGCGATGACGTTCTCCTGATCCTCACTGCTGTCCACGTTTGTGTTACGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCTGTTCTGGTTTACGGCCCGAATGTAAAACCGGGCTCACTTGGTCACCTTGAAACCTTCGCGGATATTGGTCAGACTCTGGCAAACTATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTg < 2:12333/245‑1 (MQ=255) aTGACGACATCCTGATCCTCACTGCTGACCACGGTTGTGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTTTACGGCCCGAAAGTAAAACCGGGCTCACTGGGTCACCGTGAAACCTTCGCGGATATTGGTCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATaatgggtgcggcttgatgccctcaccccgggcccctcc > 1:265939‑M1/1‑213 (MQ=255) aTCCTGATCCTCACTGCTGACCACGGTTGTGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTTTACGGCCCGAAAGTAAAACCGGGCTCACTGGGTCACCGTGAAACCTTCGCGGATATTGGTCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATaatgggtgcggcttgatgccctcaccccggccctctcccacaggga < 1:41907‑M1/251‑47 (MQ=255) tgcTGACCACGGTTGTGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTTTACGGCCCGAAAGTAAAACCGGGCTCACTGGGTCACCGTGAAACCTTCGCGGATATTGGTCAGACTCTGGCAAAATATTTTGGTACTTCTGTTATGGAATATGGCAAAGCCATGTTCTGATaatgggtgcggcttttttgccctccccccgcccctccccacccggtggggggggaaaacc > 2:5594‑M1/2‑191 (MQ=255) cACGGTTGTGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTTTACGGCCCGAAAGTAAAACCGGGCTCACTGGGTCACCGTGAAACCTTCGCGGATATTGGTCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATaatgggtgcggcttgatgccctcaccccggccctctcccacagggagagggtgaaaacatgttgata < 1:372486‑M1/251‑68 (MQ=255) gCGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTATATGGCCCGAAAGTAAAACCGGGCTCACTGTGTCATCGTGAAACCTTCGCGGATATCGGCCAGACTCTGGCAAAata > 1:187804/1‑133 (MQ=255) gCGAGCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGAACTGGTATATGGCCCGAAAGTAAACCCGGGCTCACTGTGTCATCGTGAAACCTTCGCGGATATCGGCCAGACTCTGGCAAAata < 2:187804/133‑1 (MQ=255) | TATCACCAAAAAAGTGAAAGCGACTGGCCTGGACGCGCTGTTTGACGCCACCATCAAAGAGATGAAAGAAGCGGGTGATAACACCATCGTCTTCACCAACTTCGTTGACTTCGACTCTTCCTGGGGCCACCGTCGCGACGTCGCCGGTTATGCCGCGGGTCTGGAACTGTTCGACCGCCGTCTGCCGGAGCTGATGTCTCTGCTGCGCGATGACGACATCCTGATCCTCACCGCTGACCACGGTTGCGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTATATGGCCCGAAAGTAAAACCGGGCTCACTGGGTCATCGTGAAACCTTCGCGGATATCGGCCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATGGATTTGGGCGGAGCGTTGACTCCGCCTTTGTTATGTCACAAAAAGGATAAAACAATGGCTACCCCA > NC_000913/4620406‑4620894 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |