| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,617,565 | C→T | D81D (GAC→GAT) | deoC → | deoxyribose‑phosphate aldolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,617,565 | 0 | C | T | 95.7% | 63.3 / NA | 23 | D81D (GAC→GAT) | deoC | deoxyribose‑phosphate aldolase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (10/12); minor base G (0/1); total (10/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
CTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCACCCTGAATGACGACGACACCGACGAGAAAGTGATCGCCCTGTGTCATCAGGCCAAAACTCCGG‑TCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACTCTGAAAGAGCAGGGCACCCCGGAAATCCGTATCGCTACGGTAACCAACTTCCCACACGGTAACGACGACATCGACATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCTGATGAAGTTGACGTTGTGTTCCCGTACCGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGAC‑CTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCAGCGAATGTACTGCTGAAAGTGATCATCGAAACCGGCGAACTGAAAGACGAAGCGCTGATCCGTAAAGCGTCTGAAATCTCCATCA > NC_000913/4617332‑4617800 | cTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCACCCTGAATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGG‑TCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCgcgc > 1:366178/1‑250 (MQ=255) cGTGCACTGAAATTGATGGACCTGACCACCCTGAATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGG‑TCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGc > 2:112977/1‑251 (MQ=255) cACTGAAATTGAGGGCCCTGCCCCCCCTGAAGGACGACGACACCGACGAGAATGTAATTGCTTTGTTTCTCCGGGCCAAAACCCCGG‑TCGGAAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATc < 1:221741/251‑1 (MQ=255) ccatgcccccccTGAATGACGACGACCCCGACGAAAAAGTAATTGCTCTGTGTCATCGGGCCAAACCCCCGG‑TCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCcgat < 1:112977/242‑1 (MQ=255) cccGACGATAAAGTAATTGCGCTGTGACATCAGCCCAAACCCCCGG‑TCGCAAATCCCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACGTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCTTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTCCCGTACcg < 1:152271/250‑1 (MQ=255) cgacgaGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGG‑TCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTCCCGTACcgcg > 1:271164/1‑251 (MQ=255) cgaGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGG‑TCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTCCCGTACCgcgcgc > 1:344025/1‑251 (MQ=255) caccagtcAAAACCCCGGGTCGGCAATTCCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTCCCGTACCGCGCGCTGATGGCGGGTAACGAGCAggt < 1:262823/244‑1 (MQ=255) ggCAATACCGCCGCTATCTGTATCTATCCTAGATTTCTCCCGTTTGCTCGCAAAACACTGCACGAGCAGGCCCCCCAGGAAATCCGTATTCCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGAGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGCCGTTGACGTGGTGTTCCCGTACCGCGCGCTGCTGGCGGTTTACGCGCAggttcgcttttacctctgcgactc > 2:182439/1‑231 (MQ=255) atcggTATCTAACCTCGCTTTATCCCGCTTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAAACCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAAGCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTCCCGTACCGCGCGCTGATGGAGGGTAACGAGCAGGTTGGTTTTGAC‑CTGGTGAAAGCCTGTAAAGAGGCTTg < 2:262054/247‑1 (MQ=255) atctatcCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGATGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTCCCGTACCGCGCGCTGATGGCGGGTGAAGCGCAGGTTGGGTTT‑ACACTGGTGAAAGCCttgtaagaggcgaggcgagg > 2:64970/1‑232 (MQ=255) cGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTCCCGTACCGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGAC‑CTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCAGCggaagt > 1:382374/1‑246 (MQ=255) ttATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTCCCGTACCGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGAC‑CTGGTGAATGCCTGTAAAGAGGCTTGCGCGGCAGCGAATGTAct < 1:338816/250‑1 (MQ=255) aatgctcgataaccactGAAAGAGCAGGGCACCCCAGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGGAACGATGACATCGAAAGCGCGCTGGCAGAAACCCGTGCGGCAAGCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTCCCGTACCGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGAC‑CTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCATCGAATGTACTGCTGAAAga < 2:120141/236‑2 (MQ=255) gCTCGCAAAACACTGAAAGAGCCGGGCACCCCGGAAATCCGTATTGCGACGGTAACCAACTGCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTCCCGTACCGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGAC‑CTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCAGCGAATGTACTGCTGAAAGTGa < 2:245686/250‑1 (MQ=255) aaaCACTGAAAGAGCAGGGCACCCCGGAAATCCGTAGTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTCCCGTACCGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGAC‑CTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCAGCGAATGTACTGCTGAAAGTGATCATCGaa < 1:182439/251‑1 (MQ=255) aacactGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTCCCGTACCGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGAC‑CTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCAGCGAATGTACTGCTGAAAGTGATCATCGaaa < 1:231837/247‑1 (MQ=255) cGGAAATCCGTTTTTCTACGGTAACCAACCTCCCACACGGTTACGAGGACCTCGAAATCGCTCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTCCCGTACCGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGAC‑CTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCAGCGAATGTACTGCTGAAAGTGATCATCGAAACCGGCGAACTGAAAGACGAAgcg < 1:263416/251‑1 (MQ=255) aaTCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTCCCGTACCGCGCGCTGATGGCGGGTAAAGAGCAGGCTGGTTTTGAC‑CTGGGGAAAGCCTGTAAAGAGGCTTGCGCGGCCGCGCATGTACTGATGGAAGGGAACATCGAAACCGGCGCACTggaacacgcacggctg > 1:367953/1‑235 (MQ=255) aTCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTCCCGTACCGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGAC‑CTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCAGCGAATGTACTGCTGAAAGTGATCATCGAAACCGGCGAACTGAAAGACGAAGCGCTGAt < 1:211004/251‑1 (MQ=255) ccgtactgcgtcGGTAACCAACTTCCCACACGGTAATGATGACATCGAAATCGCGCTGGCAGAAACACTTGCGGCAATCTCCTGCTGTTCCGATGAAGTTGACGTGGTGTTGCCGTACCGCGCGCTGATGGCGGGTAACGAGCAGGGTGGTGTTGGC‑CTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCAGCGAATGTACTGGTGAAAGTGATCATCGAAACCGGCGAACTGAAAGGCGAATCGCTGATcc < 2:293604/240‑1 (MQ=255) cTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTCCCGTACCGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGAC‑CTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCAGCGAATGTACTGCTGAAAGTGATCATCGAAAACGGCGCACTGAAAGACGAAACGCTGATCCGTAAAGCGACTGAAATCTcc > 1:53209/1‑250 (MQ=255) ccACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTCCCGTACCGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGAA‑CTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGGCGCGAATGTACTGCTGAAAGAGGTCATCGGAAACGGCGAAATGAAAAACGAAGCGCTGATCCGGAAAGCGGCTGAAATCTCCCTCa > 1:239719/1‑250 (MQ=255) | CTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCACCCTGAATGACGACGACACCGACGAGAAAGTGATCGCCCTGTGTCATCAGGCCAAAACTCCGG‑TCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACTCTGAAAGAGCAGGGCACCCCGGAAATCCGTATCGCTACGGTAACCAACTTCCCACACGGTAACGACGACATCGACATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCTGATGAAGTTGACGTTGTGTTCCCGTACCGCGCGCTGATGGCGGGTAACGAGCAGGTTGGTTTTGAC‑CTGGTGAAAGCCTGTAAAGAGGCTTGCGCGGCAGCGAATGTACTGCTGAAAGTGATCATCGAAACCGGCGAACTGAAAGACGAAGCGCTGATCCGTAAAGCGTCTGAAATCTCCATCA > NC_000913/4617332‑4617800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |