| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,617,409 | G→A | V29V (GTG→GTA) | deoC → | deoxyribose‑phosphate aldolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,617,409 | 0 | G | A | 97.3% | 102.3 / ‑4.4 | 37 | V29V (GTG→GTA) | deoC | deoxyribose‑phosphate aldolase |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (27/9); total (27/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.70e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.76e-01 | |||||||||||
TTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTGTATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAA‑TTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTGATCGCCCTGTGTCATCAGGCCAAAACTCCGGTCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACTCTGAAAGAGCAGGGCACCCCGGAAATCCGTATCGCTACGGTAACCAACTTCCCACACGGTAACGACGACATCGACATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCTGATGAAGTTGACGTTGTGTTCCCGTACCGCGCGC > NC_000913/4617163‑4617650 | tgtaaaGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTGTATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAATCTCGCAAGGTGAA‑TTTTATTGGCGACAAGCCATGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCGGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGATAGTGAta < 2:137878/247‑2 (MQ=255) tGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTATATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAA‑TTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCtgtg > 1:175052/1‑251 (MQ=255) tattTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGGAGATTTCCTTAATTGTGATGTATATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAA‑TTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGtcat < 2:289596/250‑1 (MQ=255) ttACAGTGATGCAAACTTGTAAGTAGATTTCCTTCATTGTGATGTATATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAA‑TTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGTCg > 1:106400/1‑251 (MQ=255) tCCTTAATTGTGATGTCTATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGAAAGGTGAA‑TTTTATTGGAGACAAGACAGGAGAATGCAATGACTGATCTGAAAGCAAGCAGCCTGCGTGAACTGAATTTGATGGACCTGACCA‑CCATG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCACAACCACGGACGGCAATACCGCCGCTATCTGTATCTAGCCt > 2:74447/1‑251 (MQ=255) ccTTAATTGTGATGTATATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAA‑TTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGTCGGCAATACCGCCGCTATCTGTATCTATCCTc > 1:263504/1‑251 (MQ=255) tAATTGTGATGTATATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAA‑TTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGTCGGCAATACCGCCGCTATCTGTATCTATCCTCGCt > 1:358988/1‑251 (MQ=255) ggctcttccgtcttCGAGGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGAAAGGTGAA‑TTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCC‑CCCTG‑AATGACGACGACACCGACGAAAAAGTAATTGCTCTGTGTCATCAGGCCAAACCCCCGGTCGGCAATACCGCCGCTATCTGTATCTATCCTCGCttt < 1:83516/238‑1 (MQ=255) tgtgATGTATATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAA‑TTTTATTGGCGACAAGACAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTACTCTGTGTCATCAGGCCAAAACCACGGTCGGCAATACCGCAGCTATCGGTATCAATCCTCGATTTa > 2:16745/1‑250 (MQ=255) cGAAGTGTGTTGCGGAGTAGATGTTAGCATACTAACAAACTCGCAAGGTGAA‑TTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGTCGGCAATACCGCCGCTATCTGTATCTATCCTCGCttt > 2:83516/1‑237 (MQ=255) gCGGATTAGATGTTAAAATAATAACAAACTCG‑AAAGTGAAATTTTATGGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCC‑CCCGG‑AATGACGACGACCCCGACGAGAAAGTAATTGCTCTGTGACATCAGGCAAAACCCCCGGCCGGCAATTCCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGa < 1:207878/251‑1 (MQ=255) ggcgTAGATGTTAGAATACTAACAAACTCGCAAGGTGAA‑TTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGTCGGCAAt > 1:57535/4‑194 (MQ=255) ggAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAA‑TTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCC‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGTCGGCAAt < 2:57536/194‑1 (MQ=255) ggAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAA‑TTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGTCGGCAAt > 1:57536/1‑194 (MQ=255) gTAGATGTTAGAATACTAACAAACTCGCAAGGTGAA‑TTTTATTGGCGACAAGCCAGGAGAATGAAATAACTGATCTGAAAGCACGCAGCCTCCGTGCACTGAAATTGCTAGACCT‑ACCAACCCTG‑AATGCCGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGCCGGCAATACCGCCGCCATCTGAATCTATCCTCGCTTTATCCCGATTGCTCCCAAACCCCTGaaaagg > 1:352849/1‑248 (MQ=255) tAGATGTTAGAATACTAACAAACTCGCAAGGTGAA‑TTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGTCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGc > 1:220891/1‑251 (MQ=255) tGTTAGAATACTAACAAACTCGCAAGGTGAA‑TTTTATTGGCGACAAGCCAGGAGATTGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGCCGACACCGACGAGAAAGTAATTGCCCTGTGTCATCAGGCCAAAACCCCGGTCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGAAggg > 1:326711/1‑251 (MQ=255) gAATACTAACAAACTCGCAAGGTGAA‑TTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGTCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCAccc > 1:322283/1‑251 (MQ=255) aTACTAACAAACTCGCAAGGTGAA‑TTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCC‑CCCTG‑AATGACGACGACACCGACGAGATAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGTCGGCAATACCACCGCTATCTGTATCTATCCTCGCTTTATCACGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCg > 1:372026/1‑251 (MQ=255) aTACTAACAAACTCGCAAGGTGAA‑TTTTATTGGAGACAAGCCAGGAGAATGAAATGCCTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATAGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCTACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAAACCCGGTCGGCAGTACCGCCGCTATCTGTATCTATCCTAGCTTGATCCCGATTGCTCGAAAAACACTGAAAGGGCAGGGCAccc > 2:211004/1‑249 (MQ=255) aTACTAACAAAATCGCAAGGTGAA‑TTTTATTGGAGACAAGCCAGGAGAAGGAAATGACTGATCTGAAAGAAAGCAGCCTGCGAGAAATGAAATTGAAGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGACATCAGGCCAAAACCCAGGTCGGCAATAACGCCGCTATCTGTATCAATCCTAGCTATATCACGATTGCTCGCAACATACTGAAAGAGCAGGGAAccc > 1:297125/1‑249 (MQ=255) tACTAACAAACTCGCAAGGTGAA‑TTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCACAACCCCGGACGGCAATACCGCCGCTATATGTCTCTATCCTCGCTTTATCCCGGTTGCTCGCAAAACACTGAAAGAGCCGGGCAcccc > 1:262782/1‑249 (MQ=255) aaCAAACTCGCAAGGTGAA‑TTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGTCGGCAATACCGCCGCTATCTGtatctat > 1:119540/1‑195 (MQ=255) aaaCTCGCAAGGTGAA‑TTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGTCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCg > 1:14706/1‑251 (MQ=255) ttttATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGTCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAAc > 1:65004/1‑250 (MQ=255) gggcaaCAAGCCAGGAAAATGAAATGACTGATCTGAAAGAAAGCAGCCTGCGTGCACTAAAATTGATGGACCTGCCCA‑CCCGG‑AATGACGACGACACCGACGAAAAAGTAATTGCTCTGTGTCATCAGGCAAAACCCCCGGTCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTc < 1:278295/246‑1 (MQ=255) aaaGCAAGGAGAATGAATTATCTGATCTAAAAGCAAGAAGCTTGCGGGCACTGAAATTGATGGACCTGACC‑‑CCCTGTAATGACGACGACCCCGACGAGAAAGTAATTGCTCGGTGTCACCAGCCCAAACCCCCGGGCGACAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCacac < 1:272010/250‑1 (MQ=255) agaATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGTCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAacgat > 1:120141/1‑250 (MQ=255) tgaaatgaCTGATCTGAAAGCAAGCAGACTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGTCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTGCCCACACGGTAacgatgcc > 1:82832/1‑246 (MQ=255) gaCTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGCCCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGTCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCaaaa > 1:117924/1‑173 (MQ=255) cTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGTCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCgcgc > 1:366178/1‑250 (MQ=255) cGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGTCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGc > 2:112977/1‑251 (MQ=255) cACTGAAATTGAGGGCCCTGCCCC‑CCCTG‑AAGGACGACGACACCGACGAGAATGTAATTGCTTTGTTTCTCCGGGCCAAAACCCCGGTCGGAAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATc < 1:221741/251‑1 (MQ=255) ccatgcccccccTG‑AATGACGACGACCCCGACGAAAAAGTAATTGCTCTGTGTCATCGGGCCAAACCCCCGGTCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCcgat < 1:112977/242‑1 (MQ=255) cccGACGATAAAGTAATTGCGCTGTGACATCAGCCCAAACCCCCGGTCGCAAATCCCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACGTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCTTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTCCCGTACcg < 1:152271/250‑1 (MQ=255) cgacgaGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGTCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTCCCGTACcgcg > 1:271164/1‑251 (MQ=255) cgaGAAAGTAATTGCTCTGTGTCATCAGGCCAAAACCCCGGTCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTCCCGTACCgcgcgc > 1:344025/1‑251 (MQ=255) | TTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTGTATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAA‑TTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACCTGACCA‑CCCTG‑AATGACGACGACACCGACGAGAAAGTGATCGCCCTGTGTCATCAGGCCAAAACTCCGGTCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAAAACTCTGAAAGAGCAGGGCACCCCGGAAATCCGTATCGCTACGGTAACCAACTTCCCACACGGTAACGACGACATCGACATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCTGATGAAGTTGACGTTGTGTTCCCGTACCGCGCGC > NC_000913/4617163‑4617650 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |