| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,617,053 | G→C | H5D (CAT→GAT) | yjjI ← | DUF3029 domain‑containing protein YjjI |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,617,053 | 0 | G | C | 96.4% | 87.3 / ‑3.1 | 28 | H5D (CAT→GAT) | yjjI | DUF3029 domain‑containing protein YjjI |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base C (7/20); total (8/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.44e-01 | |||||||||||
CGCCAGAAAACGGGCGTAATCGGGTAAGACATAGCGCGGTTTGTACGGCGCATGACCTTCAAACATATCGCAGATTACACCTTCATCCAGCGCGCGGCGGGCTTCGGCAGGAAGCTGTGGGTAAGGCAGATTGTTTTCTGCTTCCAGTGCCAGAAAATGGCGCTTCTGCTCCGGGCTAAGCACTGGGCTGGTGACAATTTGCTGGCAACGTTGTTGCAGTGCATTTTCATGAGAAGTGGGCATCTTCTTTTCCTTTTATGCCGAAGGTGATGCGCCATTGTAAGAAGTTTCGTGATGTTCACTTTGATCCTGATGCGTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTGTATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAATTTTAT > NC_000913/4616823‑4617299 | cGCCAGAAAACGGGCGTAATCGGGTAAGACATAGCGCGGTTTGTACGGCGCATGACCTTCAAACATATCGCAGATTACACCTTCATCCAGCGCGCGGCGGGCTTCGGCAGGAAGCTGTGGGTAAGGCAGATTGTTTTCTGCTTCCAGTGCCAGAAAATGGCGCTTCTGCTCCGGGCTAAGCACTGG‑CTGGTGACAATTTGCTGGCAACGTTGTTGCAGTGCATTTTCATGAGAAGTGGGCATCTTCTTTTc > 1:137878/1‑251 (MQ=255) ccAGAAAACGGGCGTAATCGGGTAAGACATAGCGCGGTTTGTACGGCGCATGACCTTCAAACATATCGCAGATTACACCTTCATCCAGCGCGCGGCGGGCTTCGGCAGGAAGCTGTGGGTAAGGCAGATTGTTTTCTGCTTCCAGTGCCAGAAAATGGCGCTTCTGCTCCGGGCTAAGCACTGGGCTGGTGACAATTTGCTGGCAACGTTGTTGCAGTGCATTTTCATCAGAAGTGGGCATCTTCTTTTcc < 1:367198/251‑1 (MQ=255) aCGGGCGTAATCTGGTAAGACATAGCGCGGTTTGTACGGCGCATGACCTTCAAACATATCGCAGATTACACCTTCATCCAGCGCGCGGCGGTCTTCGGCAGGAAGCTGTGGGTAAGGCAGATTGTTTTCTGCGTCCAGTGCCAGAAAATGGCGCTTCTGCTCCGGGCTAAGCACTGTGCTGGTGACAATTTGCTGGCAACGTTGTTGCAGTTCATTTTCATCAGAAGTGGGCATCTTCTTTTCCTTTTATg < 1:96303/251‑1 (MQ=255) aaTCGGGTAAGACATAGCGCGGTTTGTACGGCGCATGACCTTCAAACATATCGCAGATTACACCTTCATCCAGCGCGCGGCGGGCTTCGGCAGGAAGCTGTGGGTAAGGCAGATTGTTTTCTGCTTCCAGTGCCAGAAAATGGCGCTTCTGCTCCGGGCTAAGCACTGGGCTGGTGACAATTTGCTGGCAACGTTGTTGCAGTGCATTTTCATCAGAAGTGGGCATCTTCTTTTCCTTTTATGCCGAAgg < 1:56225/250‑1 (MQ=255) gTACGGCGCATGACCTTCAAACATATCGCATATTACACCTTCATCCAGCGCGCGGCGGGCTTCGGCAGGAAGCTGTGGGTAAGGCAGATTGTTTTCTGCTTCCAGTGCCAGAAAATGGCGCTTCTGCTCCGGGCTAAGCACTGGGCTGGTGACAATTTGCTGGCAACGTTGTTGCAGTGCATTTTCATCAGAAGTGGGCATCTTCTTTTCCTTTTATGCCGAAGGTGATGCGCCATTGTAAGAAGTTTCg < 1:348492/250‑1 (MQ=255) gcagagtacccgctCATCTAGCGCGTGGCGGGTTTCTGCAGGAAGCGGGGTGTAAGGCCGATTGTTTACTTCGTCCAGTTCCCTAAAATCGCGCTTCTTCTCCGGGCTAAGATCTGGGCTGGTGACAATTTGCTTGCAACGTTTTTGCAGTGCATGTTCATCAGAAGTGGGCATCTTCTTTTCCGTTTATGCCGAAGGTGATGCGCCATTGTAAGAAGTTTCGTGATTTTCACTTTTATCCTGATgagcta < 2:99202/238‑6 (MQ=255) gCAGATTACACCTTCATCCAGCGCGCGGCGGGCTTCGGCAGGAAGCTGTGGGTAAGGCAGATTGTTTTCTGCTTCCAGTGCCAGAAAATGGCGCTTCTGCTCCGGGCTAAGCACTGGGCTGGTGACAATTTGCTGGCAACGTTGTTGCAGTGCATTTTCATCAGAAGTgg > 1:319535/1‑170 (MQ=255) gCAGATTACACCTTCAGCCAGCGCGCGGCGGGCTTCGGCAGGAAGCTGTGGGTAAGGCATATTGTTTTCTGCTTCCAGTGCCAGAAAATGGCGCTTCTGCTCCGGGCTAAGCACTGGGCTGGTGACAATTTGCTGGCAACGTTGTTGCAGTGCATTTTCATCAGAAGTgg < 2:319535/170‑1 (MQ=255) ttACACCTTCATCCAGCGCGCGGCGGGCTTCGGCAGGAAGCTGTGGGTAAGGCAGATTGTTTTCTGCTTCCAGTGCCAGAAAATGGCGCTTCTGCTCCGGGCTAAGCACTGGGCTGGTGACAATTTGCTGGCAACGTTGTTGCAGTGCATTTTCATCAGAAGTGGGCATCTTCTTTTCCTTTTATGCCGAAGGTGATGCGCCATTGTAAGAAGTTTCGTGATGTTCACTTTGATCCTGATGAGTTTGccac > 1:215071/1‑251 (MQ=255) cacCGTCATCCAGCGCGCGGCGGGCTTCGGCAGGAAGCTGTGGGTAAGGCAGATTGTTTTCTGCTTCCAGTGCCAGAAAATGGCGCTTCTGCTCCGGGCTAAGCACTGGGCTGGTGACAATTTGCTGGCAACGTTGTTGCAGTGCATTTTCATCAGAAGTGGGCATCTTCTTTTCCTTTTATGCCGAAGGTGATGCGCCATTGTAAGAAGTTTCGTGATGTTCACTTTGATCCTGATGAGTTTGCcaccac < 1:177381/251‑1 (MQ=255) cATCCAGCGCGCGGCGGGCTTCGGCAGGAAGCTGTGGGTAAGGCAGATTGTTTTCTGCTTCCAGTGCCAGAAAATGGCGCTTCTGCTCCGGGCTAAGCACTGGGCTGGTGACAATTTGCTGGCAACGTTGTTGCAGTGCATTTTCATCAGAAGTGGGCATCTTCTTTTCCTTTTATGCCGAAGGTGATGCGCCATTGTAAGAAGTTTCGTGATGTTCACTTTGATCCTGATGAGTTTGCCACCACTGACGc > 1:372615/1‑251 (MQ=255) aTCCAGCGCGCGGCGGGCTTCGGCAGGAAGCTGTGGGTAAGGCAGATTGTTTTCTGCTTCCAGTGCCAGAAAATGGCGCTTCTTCTCCGGGCTAAGCACTGGGCTGGTGACAATTTGCTGGCAACGTTGGTGCAGTGCATTTTCATCAGAAGTgg < 1:319533/155‑1 (MQ=255) gaGCGCGCGGCGGGCTTTGGCAGGGAGCTGGGTGTGAGGCAGATTGGTTGCTGCTTCCAGTGCCAGGAAATTGCTCTTCTGCGTCGTGCTAAGCACTGGGCTGGTGACAATTTGCTTGCTACGTTGTTGCAGTGCATTTTCATCAGAAGTGGGCATCTTCTTTTCCTTTTATGCCGAAGGTGATGCTCTATTGTAAGTAGTTTCGTGATGTTCACTTTGAGCCTGATGAGTTTGCCGCCTCTGACGcatt < 2:8730/249‑1 (MQ=255) cgtgaggcggGCTTCGGTAGGAAGCTGTGGGTAAGGCAGATTGTTTTCTGCTTCCAGTGCCAGAAAATGGCGCTTCTGCTCCGGGCTAAGCTCTGGGCTGGTGACAATTTGCTGGCAACGTTGTTGCAGTGCATTTTCATCAGAAGTGTGCATCTTCTTTTCCTTTTATGCCGAAGTTGATGCGCCATTGTAAGAAGTTTCGTGATGTTCACTTTGATCCTGATGAGTTTGCCCCCACTGACGcattcatt < 2:210497/246‑1 (MQ=255) ggcggGCTTCGGCAGGAAGCTGTGGGTAAGGCAGCTTGTTTTCTGCTTCCAGTGCCAGAAAATGGCGCTTCTGCTCCGGGCTACGCACTGGGCTGGTGACAATTTGCTTGCAACGTTGTTGCAGTGCATTTTCATCAGAAGTGGGCATCTTCTTTTCCTTTTTTGCCGAAGGTGATGCGcc > 2:329786/1‑181 (MQ=255) ggcggGCTTCGGCAGGAAGCTGTGGGTAAGGCAGATTGTTTTCTGCTTCCAGTGCCAGAAAATGGCGCTTCTGCTCCGGGCTAAGCACTGGGCTGGTGACAATTTGCTGGCAACGTTGTTGCAGTGCATTTTCATCAGAAGTGGGCATCTTCTTTTCCTTTTATGCCGAAGGTGATGCGcc < 1:329786/181‑1 (MQ=255) gCTGTGGGTAAGGCAGATTGTGTTCTGCTTCCAGTGCCAGAAAATGGCGCTTCTGCTCCGGGCTAAGCACTGGGCTGGTGACAATTTGCTGGCAACGTTGTTGCAGTGCATTTTCATCAGAAGTGGGCATCTTCTTTTCCTTGTATGCCGAAGGTGATGCGCCATTGTAAGAAGTTGCGTGATGTTCACTTTGATCCTGATGAGTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAg < 2:383091/251‑1 (MQ=255) cAGATTGTTTTCTGCTTCCAGTGCCAGAAAATGGCGCTTCTGCTCCGGGCTAAGCACTGGGCTGGTGACAATTTGCTGGCAATGTTGTTGCAGTGCATTTTCATCAGAAGTGGGCATCTTCTTTTCCTTTTATGCCGAAGGTGATGCGCCATTGTAAGAAGTTTCGTGATGTTCACTTTGATCCTGATGAGTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGt < 1:269940/251‑1 (MQ=255) gCTTCCAGTGCCAGAAAATGGCGCTTCTGCTCCGGGCTAAGCACTGGGCTGGTGACAATTTGCTGGCAACGTTGTTGCAGTGCATTTTCATCAGAAGTGGGCATCTTCTTTTCCTTTTATGCCGAAGGTGATGCGCCATTGTAAGAAGTTTCGTGATGTTCACTTTGATCCTGATGAGTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACtt < 1:252827/249‑1 (MQ=255) gTGCCAGAAAATGGCGCTTCTGCTCCGGGCTAAGCACTGGGCTGGTGACAATTTGCTGGCAACGTTGTTGCAGTGCATTTTCATCAGAAGTGGGCATCTTCTTTTCCTTTTATGCCGAAGGTGATGCGCCATTGTAAGAAGTTTCGTGATGTTCACTTTGATCCTGATGAGTTTGCCACCACTGACGCATTCATTTGAAAGGGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGt > 1:266525/1‑248 (MQ=255) gCTCCGGGTTACGCACTTGGTTGGTGGTAATATTCTGGCATCGTTGGTGCAATGCATGTTCATCAGAAGTGGGCATCTTTTTTTACCTGTATGCTGAAGGTGATGTGTCATTGTAAGAAGATTCTTGATGTTCGCTTTGATCCTGATGAGTTTGAAACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCATACTTGTAAGGAGATTTCCATAATGGtgttgta < 2:281178/249‑2 (MQ=255) gttAAGCAATGGGCTTGTGACAATTTGCTCGTAACGTTTTTGCAGTTCATTTTTATCAGATGTGGGCATCTTCTTTTCCTTTTATGCCGAAGGTGATGCGTCATTGTAAGAAGTTGCGTTATGTTCACTTTGATCCTGATGAGTTTGCAATCACTGACGTATTCATTTGAAAGTGAATTATTTGAACCCGATCGCATTACAGTGATGCAAACTTGTAAGGAGATTTCCTTAATTGTGATGTATATCGAAgt < 1:170183/249‑1 (MQ=255) aGCACTGGGCTGGTGACAATTTGCTGGCAACGTTGTTGCAGTGCATTTTCATCAGAAGTGGGCATCTTCTTTTCCTTTTATGCCGAAGGTGATGCGCCATTGTAAGAAGTTTCGTGATGTTCACTTTGATCCTGATGAGTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTATATCGAAgtgtgt < 1:372926/251‑1 (MQ=255) cTGGCAACGTTGTTGCAGTGCATTTTCATCAGAAGTGGGCATCTTCTTTTCCTTTTATGCCGAAGGTGATGCGCCATTGTAAGAAGTTTCGTGATGTTCACTTTGATCCTGATGAGTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGTAg < 1:160797/195‑1 (MQ=255) cTGGCAACGTTGTTGCAGTGCATTTTCATCAGAAGTGGGCATCTTCTTTTCCTTTTATGCCGAAGGTGATGCGCCATTGTAAGAAGTTTCGTGATGTTCACTTTGATCCTGATGAGTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGTAg > 2:160797/1‑195 (MQ=255) tgCAGTGCATTTTCATCAGAAGTGGGCATCTTCTTTTCCTGTTATGCTGAAGGTGATGCGCCATTGTAAGAAGTTTCGTGTTGTTCACTTTGATCCTGATGAGTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTATATCGAAGTGTGTTGCGGAGGAGATGTTATAATACTAACAAACTCGCa < 2:288602/250‑1 (MQ=255) tGCATTTTCATCAGAAGTGGGCATCTTCTTTTCCTTTTATGCCGAAGGTGATGCGCCATTGTAAGAAGTTTCGTGATGTTCACTTTGATCCTGATGAGTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTATATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTg > 1:65050/1‑250 (MQ=255) cATTTTCATCAGAAGTGGGCATCTTCTTTTCCTTTTATGCCGAAGGTGATGCGCCATTGTAAGAAGTTTCGTGATGTTCACTTTGATCCTGATGAGTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTATATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAAt < 1:43446/251‑1 (MQ=255) tcatcaGAAGTGGGCATCTTCTTTTCCTTTTATGCCGAAGGTGATGCGCCATTGTAAGAAGTTTCGTGATGTTCACTTTGATCCTGATGAGTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTATATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAATTTTAt > 1:262054/1‑251 (MQ=255) | CGCCAGAAAACGGGCGTAATCGGGTAAGACATAGCGCGGTTTGTACGGCGCATGACCTTCAAACATATCGCAGATTACACCTTCATCCAGCGCGCGGCGGGCTTCGGCAGGAAGCTGTGGGTAAGGCAGATTGTTTTCTGCTTCCAGTGCCAGAAAATGGCGCTTCTGCTCCGGGCTAAGCACTGGGCTGGTGACAATTTGCTGGCAACGTTGTTGCAGTGCATTTTCATGAGAAGTGGGCATCTTCTTTTCCTTTTATGCCGAAGGTGATGCGCCATTGTAAGAAGTTTCGTGATGTTCACTTTGATCCTGATGCGTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTGTATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAATTTTAT > NC_000913/4616823‑4617299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |