| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,616,022 | T→C | V348V (GTA→GTG) | yjjI ← | DUF3029 domain‑containing protein YjjI |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,616,022 | 0 | T | C | 94.3% | 90.3 / NA | 36 | V348V (GTA→GTG) | yjjI | DUF3029 domain‑containing protein YjjI |
| Reads supporting (aligned to +/- strand): ref base T (1/0); major base C (16/17); minor base A (2/0); total (19/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.17e-01 | |||||||||||
TTTGATGGTTTCGTCGAGCGTCAGAATGTCGCTGATGCCGGAATAATAATAAGCATGATGCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCTACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTTTCACAC‑AGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTATTCTCAAAGAAGTGTGATTGTTGATAGAGGAATTCACACCGCGCATCGATGATGGCGATCTGCTGCTGGCAGTAGTGCGGTAGAGTGCGC > NC_000913/4615776‑4616259 | tttGATGGTTTCGTCGAGCGTCAGAATGTCGCTGTTGCCGGAATAATAATAAGCATGATGCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATGAGGCAACCGCGCGCCCGGCGTGGTGACGTTATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGAGTGTTTGCCAGCCATATTTCACGGGGGTATGGGCGACACGCTCCGCCAGTTGCGCGCTGTTGCGATAACCAACtt > 2:123406/1‑251 (MQ=255) gtcgAGCGTCAGAATGTCGCTGATGCCGGAATAATAATAAGCATGATGCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGcggcgg > 1:123834/1‑251 (MQ=255) aGCGTCAGAATGTCGCTGATGCCGGAATAATAATAAGCATGATGCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGcttc < 1:215598/251‑1 (MQ=255) aGAATGTCGCTGATGCCGGAATAATAATAAGAATGATGCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATAGCCATACAGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGCACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGACAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGAGGCTTCTTTAcc > 1:28583/1‑251 (MQ=255) cGGAATAATAATAAGCATGATGCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAGCGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATc > 1:181298/1‑251 (MQ=255) aataataatAAGCATGATGCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCct < 1:310611/251‑1 (MQ=255) taataataaGCATGATGCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATACCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACACACTCCGCCAGTTGCGCGCTGATGCGATAACCAACTTCATTTGCGGCGGCTTCTTTCCCGTAGCGAGCGG‑CAATCCcttc > 2:37753/1‑251 (MQ=255) aaGCATGAGGCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGTCTGTGCTTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTCTca < 1:361343/251‑1 (MQ=255) atgatgCGGTGCGACCGTTTGCAGATGGGTGATCGAATATGGCTCATCGCCATAAGGCAAACGCGCGCCCGGCGTGGTGCCGCTATAGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTCCGGCGGCATCTTTACCGTAGCGCGCGGACAA‑CCCTTCTTTCTcacacc > 2:336162/1‑250 (MQ=255) tgatgCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTCTcacac > 1:324739/1‑249 (MQ=255) atgCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGCATTGGCGCCAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGAGGCTTCTTTACCGCAACGCGCgggaaacccctatttctcacccatc > 2:284946/1‑227 (MQ=255) ggggCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACt > 1:15142/1‑189 (MQ=255) gACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTCTCACAC‑AGCAAGTTAACCg < 1:284946/251‑1 (MQ=255) gtgtGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGAGGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTCTCACAC‑AGCAAGTTAACCGCTTc < 1:196977/248‑1 (MQ=255) ggTGCTCGGATCTGGCGCATCGCCATACGGCAAACGCGCGTCCGGCGTGGTGCCGATATCGGAACGGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTCTCACAC‑AGCAAGTTAACCGCTTCCGCCAGCCCAt < 1:357043/251‑1 (MQ=255) gTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTCTCACAC‑AGCAAGTTAACCGCTTCCGCCAGCCCAt > 1:336462/1‑250 (MQ=255) gATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTCTCACAC‑AGCAAGTTAACCGCTTCCGCCAGccccgatc > 1:317510/1‑246 (MQ=255) cGGATCTAGCTCATCGCCATATGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGCCTGTGCGTGTAACATGGCGCGTTTTTTCCAGACATATTTCACGGGGGCATTGGCGACAAACACCGCCAGTTGCGCGCTTATGCGATAACCCACTCCCTTGGCGGCGGCCTCTTTATCTGAGCTCGCGG‑CAATCCCTTCTTTT‑CACACCATCCAGTTTACCGCTTCCGCCAGcacccacctac > 2:92630/1‑241 (MQ=255) ggATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATCTCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACCAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTCTCACAC‑AGCAAGTTAACCGCTTCCGCCAGCCCATACATGcc > 1:118090/1‑251 (MQ=255) gcgcCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTCTCACAC‑AGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAAt < 1:41826/251‑1 (MQ=255) ggggggtgCCGATAGCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTCTCACAC‑AGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCct < 1:360456/247‑1 (MQ=255) gtatactggaatctacccccgtcggtgCGTGTAACAAGCCTCGGTTTGGCCCGCCATATTTCACAGGGTTATTGGCGCCAAACGCCGCCAGTTGCGCGCTGAGGCGATACCCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAACCCCTGCTTGCTCACCC‑AGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGGTCAGTGTTAATCAGCCCTTCTTTCAcc < 2:323790/227‑1 (MQ=255) aaCTGATCCCCGACTGTGCTTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTCTCACAC‑AGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTa < 1:246840/251‑1 (MQ=255) ccTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTCTCTCACAC‑AGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTAt < 1:238226/250‑1 (MQ=255) gcgcGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTCTCACAC‑AGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTATTCTCAAAGAAGTGTGATTGTTGATagag < 1:123406/251‑1 (MQ=255) gccagccaTATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATACCCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTCTCACAC‑AGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTATTCTCAAAGAAGTGTGATTGTTGATAGAGGAATTcaca < 1:54288/250‑1 (MQ=255) aCGGGGGTATTGGCGACAAACTCCACCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTCTCACAC‑AGCAAGTTAACCGCTTCCGCCACCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTATTCTCAAAGAAGTGTGATTGTTGATAGAGGAATTCACACCGCGCATCgatgat > 1:146170/1‑251 (MQ=255) gggggTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTCTCACAC‑AGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGt > 1:285327/1‑167 (MQ=255) gggggTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTCTCACAC‑AGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGt < 2:285327/167‑1 (MQ=255) ggTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCCCGCGG‑CAATCCCTTCTTTCTCACAC‑AGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCCCAAATCGTTCAGGGTTAATCAGCCCTTCTTTCACCCGGAAGCTATTCTCCAAGAAGTGTGATTGTTGATAGAGGAATTCACACCGCGCATCGATGATGGca > 1:206599/1‑249 (MQ=255) gACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCTACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTT‑CACAC‑AGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTATTCTCAAAGAAGTGTGATTGTTGATAGAGGAATTCACACCGCGCATCGATGATGGCGATctgctgctg > 1:89390/1‑251 (MQ=255) ccGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTCTCACAC‑AGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTATTCTCAAAGAAGTGTGATTGTTGATAGAGGAATTCACACCGCGCATCGATGATGGCGATCTGCTGCTGGCagt < 1:37753/249‑1 (MQ=255) ccGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGGAGCGCGCGG‑CAATCCCTTCTTTCTCACAC‑AGCAAGTTAACCGCTGCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTATTCTCAAAGAAGTGTGATTGTTGATAGAGTAATTCACACCGCGCATCGATGATGGCGATCTGCTGCTGGCagt < 1:349147/249‑1 (MQ=255) gtccTGAAGCGAAAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTCGCACAC‑AGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATGGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTATTCTCAAAGAAGTGTGATTGTTGATAGAGGAATTCACACCGCGTATCGATGATGGCGATCTGCTGCTGGCAGTAGTGCGGTAGAGt < 2:123834/248‑1 (MQ=255) gcgcTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTCTCACAC‑AGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGATCAGGGTTAATCAGCCCTTCTTTCCACAGGAAGCTATTCTCAAGGAAGTGTGATTGTTGATAGAGGAATTCACACCGCGCATCGATAATGGCGATCTGCTGCTAGAAGTAGTGCGGTagagg > 1:85679/1‑250 (MQ=255) tGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTCTCACAC‑AGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTATTCTCAAAGAAGTGTGATTGTTGATAGAGGAATTCACACCGCGCATCGATGATGGCGATCTGCTGCTGGCAGTAGTGCGGTAGAGTgcgc > 1:32587/1‑251 (MQ=255) | TTTGATGGTTTCGTCGAGCGTCAGAATGTCGCTGATGCCGGAATAATAATAAGCATGATGCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCTACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGG‑CAATCCCTTCTTTTTCACAC‑AGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTATTCTCAAAGAAGTGTGATTGTTGATAGAGGAATTCACACCGCGCATCGATGATGGCGATCTGCTGCTGGCAGTAGTGCGGTAGAGTGCGC > NC_000913/4615776‑4616259 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |