Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,616,022 T→C V348V (GTA→GTG yjjI ← DUF3029 domain‑containing protein YjjI

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,616,0220TC94.3% 90.3 / NA 36V348V (GTA→GTGyjjIDUF3029 domain‑containing protein YjjI
Reads supporting (aligned to +/- strand):  ref base T (1/0);  major base C (16/17);  minor base A (2/0);  total (19/17)
Fisher's exact test for biased strand distribution p-value = 4.86e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.17e-01

TTTGATGGTTTCGTCGAGCGTCAGAATGTCGCTGATGCCGGAATAATAATAAGCATGATGCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCTACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTTTCACACAGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTATTCTCAAAGAAGTGTGATTGTTGATAGAGGAATTCACACCGCGCATCGATGATGGCGATCTGCTGCTGGCAGTAGTGCGGTAGAGTGCGC  >  NC_000913/4615776‑4616259
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                               
tttGATGGTTTCGTCGAGCGTCAGAATGTCGCTGTTGCCGGAATAATAATAAGCATGATGCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATGAGGCAACCGCGCGCCCGGCGTGGTGACGTTATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGAGTGTTTGCCAGCCATATTTCACGGGGGTATGGGCGACACGCTCCGCCAGTTGCGCGCTGTTGCGATAACCAACtt                                                                                                                                                                                                                                             >  2:123406/1‑251 (MQ=255)
            gtcgAGCGTCAGAATGTCGCTGATGCCGGAATAATAATAAGCATGATGCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGcggcgg                                                                                                                                                                                                                                 >  1:123834/1‑251 (MQ=255)
                aGCGTCAGAATGTCGCTGATGCCGGAATAATAATAAGCATGATGCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGcttc                                                                                                                                                                                                                             <  1:215598/251‑1 (MQ=255)
                      aGAATGTCGCTGATGCCGGAATAATAATAAGAATGATGCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATAGCCATACAGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGCACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGACAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGAGGCTTCTTTAcc                                                                                                                                                                                                                       >  1:28583/1‑251 (MQ=255)
                                      cGGAATAATAATAAGCATGATGCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAGCGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATc                                                                                                                                                                                                      >  1:181298/1‑251 (MQ=255)
                                         aataataatAAGCATGATGCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCct                                                                                                                                                                                                   <  1:310611/251‑1 (MQ=255)
                                           taataataaGCATGATGCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATACCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACACACTCCGCCAGTTGCGCGCTGATGCGATAACCAACTTCATTTGCGGCGGCTTCTTTCCCGTAGCGAGCGGCAATCCcttc                                                                                                                                                                                                 >  2:37753/1‑251 (MQ=255)
                                                  aaGCATGAGGCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGTCTGTGCTTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTCTca                                                                                                                                                                                          <  1:361343/251‑1 (MQ=255)
                                                      atgatgCGGTGCGACCGTTTGCAGATGGGTGATCGAATATGGCTCATCGCCATAAGGCAAACGCGCGCCCGGCGTGGTGCCGCTATAGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTCCGGCGGCATCTTTACCGTAGCGCGCGGACAACCCTTCTTTCTcacacc                                                                                                                                                                                      >  2:336162/1‑250 (MQ=255)
                                                       tgatgCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTCTcacac                                                                                                                                                                                       >  1:324739/1‑249 (MQ=255)
                                                         atgCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGCATTGGCGCCAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGAGGCTTCTTTACCGCAACGCGCgggaaacccctatttctcacccatc                                                                                                                                                                                     >  2:284946/1‑227 (MQ=255)
                                                             ggggCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACt                                                                                                                                                                                                                                              >  1:15142/1‑189 (MQ=255)
                                                                  gACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTCTCACACAGCAAGTTAACCg                                                                                                                                                                         <  1:284946/251‑1 (MQ=255)
                                                                      gtgtGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGAGGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTCTCACACAGCAAGTTAACCGCTTc                                                                                                                                                                     <  1:196977/248‑1 (MQ=255)
                                                                                 ggTGCTCGGATCTGGCGCATCGCCATACGGCAAACGCGCGTCCGGCGTGGTGCCGATATCGGAACGGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTCTCACACAGCAAGTTAACCGCTTCCGCCAGCCCAt                                                                                                                                                          <  1:357043/251‑1 (MQ=255)
                                                                                  gTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTCTCACACAGCAAGTTAACCGCTTCCGCCAGCCCAt                                                                                                                                                          >  1:336462/1‑250 (MQ=255)
                                                                                    gATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTCTCACACAGCAAGTTAACCGCTTCCGCCAGccccgatc                                                                                                                                                       >  1:317510/1‑246 (MQ=255)
                                                                                       cGGATCTAGCTCATCGCCATATGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGCCTGTGCGTGTAACATGGCGCGTTTTTTCCAGACATATTTCACGGGGGCATTGGCGACAAACACCGCCAGTTGCGCGCTTATGCGATAACCCACTCCCTTGGCGGCGGCCTCTTTATCTGAGCTCGCGGCAATCCCTTCTTTTCACACCATCCAGTTTACCGCTTCCGCCAGcacccacctac                                                                                                                                                    >  2:92630/1‑241 (MQ=255)
                                                                                        ggATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATCTCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACCAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTCTCACACAGCAAGTTAACCGCTTCCGCCAGCCCATACATGcc                                                                                                                                                   >  1:118090/1‑251 (MQ=255)
                                                                                                                      gcgcCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTCTCACACAGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAAt                                                                                                                     <  1:41826/251‑1 (MQ=255)
                                                                                                                             ggggggtgCCGATAGCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTCTCACACAGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCct                                                                                                              <  1:360456/247‑1 (MQ=255)
                                                                                                                                      gtatactggaatctacccccgtcggtgCGTGTAACAAGCCTCGGTTTGGCCCGCCATATTTCACAGGGTTATTGGCGCCAAACGCCGCCAGTTGCGCGCTGAGGCGATACCCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAACCCCTGCTTGCTCACCCAGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGGTCAGTGTTAATCAGCCCTTCTTTCAcc                                                                                                     <  2:323790/227‑1 (MQ=255)
                                                                                                                                               aaCTGATCCCCGACTGTGCTTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTCTCACACAGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTa                                                                                            <  1:246840/251‑1 (MQ=255)
                                                                                                                                                ccTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTCTCTCACACAGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTAt                                                                                           <  1:238226/250‑1 (MQ=255)
                                                                                                                                                                            gcgcGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTCTCACACAGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTATTCTCAAAGAAGTGTGATTGTTGATagag                                                               <  1:123406/251‑1 (MQ=255)
                                                                                                                                                                                      gccagccaTATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATACCCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTCTCACACAGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTATTCTCAAAGAAGTGTGATTGTTGATAGAGGAATTcaca                                                      <  1:54288/250‑1 (MQ=255)
                                                                                                                                                                                                    aCGGGGGTATTGGCGACAAACTCCACCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTCTCACACAGCAAGTTAACCGCTTCCGCCACCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTATTCTCAAAGAAGTGTGATTGTTGATAGAGGAATTCACACCGCGCATCgatgat                                       >  1:146170/1‑251 (MQ=255)
                                                                                                                                                                                                      gggggTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTCTCACACAGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGt                                                                                                                         >  1:285327/1‑167 (MQ=255)
                                                                                                                                                                                                      gggggTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTCTCACACAGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGt                                                                                                                         <  2:285327/167‑1 (MQ=255)
                                                                                                                                                                                                         ggTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCCCGCGGCAATCCCTTCTTTCTCACACAGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCCCAAATCGTTCAGGGTTAATCAGCCCTTCTTTCACCCGGAAGCTATTCTCCAAGAAGTGTGATTGTTGATAGAGGAATTCACACCGCGCATCGATGATGGca                                   >  1:206599/1‑249 (MQ=255)
                                                                                                                                                                                                                  gACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCTACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTTCACACAGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTATTCTCAAAGAAGTGTGATTGTTGATAGAGGAATTCACACCGCGCATCGATGATGGCGATctgctgctg                        >  1:89390/1‑251 (MQ=255)
                                                                                                                                                                                                                          ccGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTCTCACACAGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTATTCTCAAAGAAGTGTGATTGTTGATAGAGGAATTCACACCGCGCATCGATGATGGCGATCTGCTGCTGGCagt                   <  1:37753/249‑1 (MQ=255)
                                                                                                                                                                                                                          ccGCCAGTTGCGCGCTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGGAGCGCGCGGCAATCCCTTCTTTCTCACACAGCAAGTTAACCGCTGCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTATTCTCAAAGAAGTGTGATTGTTGATAGAGTAATTCACACCGCGCATCGATGATGGCGATCTGCTGCTGGCagt                   <  1:349147/249‑1 (MQ=255)
                                                                                                                                                                                                                                     gtccTGAAGCGAAAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTCGCACACAGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATGGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTATTCTCAAAGAAGTGTGATTGTTGATAGAGGAATTCACACCGCGTATCGATGATGGCGATCTGCTGCTGGCAGTAGTGCGGTAGAGt      <  2:123834/248‑1 (MQ=255)
                                                                                                                                                                                                                                     gcgcTGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTCTCACACAGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGATCAGGGTTAATCAGCCCTTCTTTCCACAGGAAGCTATTCTCAAGGAAGTGTGATTGTTGATAGAGGAATTCACACCGCGCATCGATAATGGCGATCTGCTGCTAGAAGTAGTGCGGTagagg      >  1:85679/1‑250 (MQ=255)
                                                                                                                                                                                                                                         tGATGCGATAACCCACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTCTCACACAGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTATTCTCAAAGAAGTGTGATTGTTGATAGAGGAATTCACACCGCGCATCGATGATGGCGATCTGCTGCTGGCAGTAGTGCGGTAGAGTgcgc  >  1:32587/1‑251 (MQ=255)
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                               
TTTGATGGTTTCGTCGAGCGTCAGAATGTCGCTGATGCCGGAATAATAATAAGCATGATGCGGGGCGACAGTTTGCAGATGGGTGATCGGATCTGGCTCATCGCCATACGGCAAACGCGCGCCCGGCGTGGTGCCGATATCGGAACTGATCCCCGACTGTGCGTGTAACATGGCGCGTTTTTGCCAGCCATATTTCACGGGGGTATTGGCGACAAACTCCGCCAGTTGCGCGCTGATGCGATAACCTACTTCATTTGCGGCGGCTTCTTTACCGTAGCGCGCGGCAATCCCTTCTTTTTCACACAGCAAGTTAACCGCTTCCGCCAGCCCATACATGCCAAACATTGGCACAAAACGTTCAGGGTTAATCAGCCCTTCTTTCACCAGGAAGCTATTCTCAAAGAAGTGTGATTGTTGATAGAGGAATTCACACCGCGCATCGATGATGGCGATCTGCTGCTGGCAGTAGTGCGGTAGAGTGCGC  >  NC_000913/4615776‑4616259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: