| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,605,702 | A→C | intergenic (‑39/‑102) | fhuF ← / → yjjZ | ferric‑siderophore reductase FhuF/DUF1435 domain‑containing protein YjjZ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,605,702 | 0 | A | C | 92.6% | 72.7 / ‑4.0 | 27 | intergenic (‑39/‑102) | fhuF/yjjZ | ferric‑siderophore reductase FhuF/DUF1435 domain‑containing protein YjjZ |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base C (15/10); total (16/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAGAGAACTTAGCACATTCGGTGATGACCATTGCGCCAGCGTCATGGCGTTAAGTGGGGCAGGTTCATCCAGGCGGATAAACTCCAGCAAATGTTCACGATGTTTTGCGATCGTCGCCCGCACGGCTTGCGCAAGCGTGGGATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCATAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAAAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCATTCTGATGGGATTAGTATTGACGCCG > NC_000913/4605457‑4605935 | cagAGAACTTAGCACATTCGGTGATGACCATTGCGCCCGGGTCATGGAGTTAAGTGGGGCAGGTTCATCCAGGCAGATAAACTCCAGCAAATGTTCACGATGTTTTGCGAGCGTCGCCCGCACGGCTTGCGCAAGCGTGGGATCCTGCGGCTGGAGATGCGTACGCCAGATGACATCGTCATAGATCGGTGCGGAACGCGAGGCCATAATAGGGATAGGAATCTAAATAATAATGATTGCTAATCCTAGCg > 1:242961/1‑251 (MQ=255) gagaACTTAGCACATTCGGTGATGACCATTGCGCCAGCGTCATGGCGTTAAGTGGGGCAGGTTCATCCAGGCGGATAAACTCCAGCAAATGTTCACGATGTTTTGCGATCGTCGCCCGCACGGCTTGCGCAAGCGTGGGATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGAt > 1:107884/1‑251 (MQ=255) caTTCGGTGATGACCATTGCGCCAGCATCATGGCGTTAAGTGAGGCAGGTTCATCCAGGAGGATAAACTCCAGCAAATGTTCACGATGTTTTGCGAACGTCGCCCGCACGGCTTGCGCAAGCGTGGGATCCTGCGGCTGGTGATGCGTTCGCCAGAAGTAATTTTCATAGAGCGGTGCGGAACAGTAGGCCACAATCGGGTTAGTAAACTATATGTAAATGTATGCTAATCCTAGCGATAGGTTTAccca > 2:233596/1‑249 (MQ=255) ttCGGTGATGACCATTGCGCCAGCGTCATGGCGTTAAGTGGGGCAGGTTCATCCAGGCGGATAAACTCCAGCAAATGTTCACGATGTTTTGCGATCGTCGCCCGCACGGCTTGCGCAAGCGTGGGATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGAt > 1:263794/1‑250 (MQ=255) ggggCAGGTTCATCCAGGCGGATAAACTCCAGCAAATGTTCACGATGTTTTGCGATCGTCGCCCGCACGGCTTGCGCAAGCGTGGGATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTAt < 1:192424/250‑1 (MQ=255) ccAGGCGGATAAACTCCAGCAAAGGTTCACGATGTTTTGCGATCGGCGCCCGCACGGCTTGCGCAAGCGTGGGATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAAGTATCATATGATATTGGt < 1:9461/251‑1 (MQ=255) ggCGGATAAATTCCAGCAAATGTAAACGATGATTTGCGATCGTCGCCCGCAAGCCTAGCACAAGCGTGGCATCCTGCGGCTGGGGATGCGTTCGCCAGATGACATCTTCATAGAGCGGGGCGGAACGAAAGGCCATCATAGGGATAGTAATCTAAATGATAATGATTGCTAAGTATAACAAAAGGTTTACCAGATATAATGGGATGTATATTGCTTTCAAATAAAAAAAATTATCAAATGATATTTGttat > 2:320591/1‑251 (MQ=255) gATAAACTCCAGCAAATGTGCACGATGTTTTGCGATCGTCGCCCGCACGGCTTGCGCAAGCGTGGGATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTAGCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGttatcatt < 1:312786/251‑1 (MQ=255) aaCTCCAGCAATTGTTCACGATGTTATACTATCGTCGCCCGCACGGCTTGCGCAAGCGTGGGATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATATGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGttatcattatca < 2:107884/251‑1 (MQ=255) ttttGCGATAGTCGCCCGCACGGCTTGCGCAAGCGTGGGATCCTGCGGCTGGAGATGCGTTCGAAAGATGACATCTTCATAGAGCGGTGCGGAAAGATAGGCCATAATCGGAATAGTAATCTAAATGATAATGATTGCTAATCCTCGCGATAGGTTTACCCGATAGCAAGGGCTTTATCTGGCTTGCAAATGATAAAAATTATCATATGTAATTGGTTATCATTTACCATGAGAGAGGTGAAATTATGTTg > 2:210992/1‑251 (MQ=255) gCACGGCTTGCGCAAGCGTGGGATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTAACCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCCATGAGAGATATGAAATAATGTTGCAACGTCCGCTGGGc > 2:113439/1‑249 (MQ=255) ccACGGCTTGCGCAAGTGTGGGTTCCTGCGTCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGTATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAg < 2:374099/250‑1 (MQ=255) gCGTGGGATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTg < 1:38332/219‑1 (MQ=255) gCGTGGGATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAAAGATGAAATAATGTTg > 2:38332/1‑219 (MQ=255) gggctCCTGCGGCTGGAGATTCGTTCGCCAGAAGACATCTTCATAGAGCGGTGCGGAACGATAGGCTATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCATAGCGATAGGTGTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAAAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTtgct < 2:152067/246‑1 (MQ=255) gggATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTtgctg < 1:276487/251‑1 (MQ=255) cGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAAt < 2:1246/185‑1 (MQ=255) cGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAAt > 1:1246/1‑185 (MQ=255) agaTGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTg < 1:338881/251‑1 (MQ=255) ggTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTc > 1:231813/1‑246 (MQ=255) tatatgacATAATCGGGATAGTAATATAAATGATAATGATTGCTAAGCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATAAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGATGCCGGGTTTGCTGATTGCAGGGCTGATGGATGCGGATTTATCGTCAGTTCAATGGCGGAt > 2:86082/8‑251 (MQ=255) aTCGGGATAGTAATCTAAATGATAATGATTGCTACTCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCCTTCTg > 1:283590/1‑250 (MQ=255) gATAGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGATGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCATTCTgtagggg > 1:264432/1‑245 (MQ=255) aGTAATCTAAATGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCCTTATCAATGAGAGAGATGAACTCATGTTGCAACGTACGCTGGGCAGTGACTGGGGCGTGTTGCTGCCGGGATTGCTTATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCATTCTGATGGGAtt > 1:232925/1‑250 (MQ=255) aaaTGATAATGATTGCTAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCATTCTGATGGGATTAGTATTGAc > 1:86785/1‑251 (MQ=255) aaaTGATAATGATTGCAAATCCTAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAACTTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGTGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGGAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCAATATGATGGGATTAggttttgc > 2:315103/1‑244 (MQ=255) gataattatTGCGAATCCTAGCGATAGTTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAGAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGTGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTTATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCATTCTGATGGTATTAGTATTGACGCCg < 2:263794/251‑1 (MQ=255) | CAGAGAACTTAGCACATTCGGTGATGACCATTGCGCCAGCGTCATGGCGTTAAGTGGGGCAGGTTCATCCAGGCGGATAAACTCCAGCAAATGTTCACGATGTTTTGCGATCGTCGCCCGCACGGCTTGCGCAAGCGTGGGATCCTGCGGCTGGAGATGCGTTCGCCAGATGACATCTTCATAGAGCGGTGCGGAACGATAGGCCATAATCGGGATAGTAATCTAAATGATAATGATTGCTAATCATAGCGATAGGTTTACCCGATAGCAAGGGATTTATCTGGCTTGCAAATGATAAAAATTATCATATGATATTGGTTATCATTATCAATGAAAGAGATGAAATCATGTTGCAACGTACGCTGGGCAGTGGCTGGGGAGTGTTGCTGCCGGGATTGCTGATTGCAGGGCTGATGTATGCGGATTTATCGTCAGATCAGTGGCGGATTGTCATTCTGATGGGATTAGTATTGACGCCG > NC_000913/4605457‑4605935 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |