| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,560,309 | T→A | P124P (CCA→CCT) | yjiH ← | uncharacterized protein YjiH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,560,309 | 0 | T | A | 93.5% | 77.0 / ‑0.5 | 31 | P124P (CCA→CCT) | yjiH | uncharacterized protein YjiH |
| Reads supporting (aligned to +/- strand): ref base T (0/2); new base A (15/14); total (15/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.84e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.99e-01 | |||||||||||
GCTCCGACAAATTTAAACACCAGGATGACGGCTAAAGGTACGATTACGGACGTGCCCAGAAAGGCAAACACCGCGACGCCGGAAGAGAAGTAGTTGGTGATGATGGCGCTACCGCTGGTTTGATATGCGGCGAAAATCACTTTATCGCGTTCGGTAATTTCACCTTCCTGCGCCAGCTCTTTGGTCATACCGGCGGCGGCATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCTGGAATGCCCAACAACGGTTTTAGCACAGGTGTCATTAACTGCTGCGCGGCGCGTAATCCACCAAGACCATCGGTAATTGAAATAATCCCCAGAGAGAGAATGACTGACGGTGCCAGCTCCAGCGCAAAGAGAAAGCCATCTTTAGCCCCCGCGCCACCCGCGCCGCGAAATGAGGTGGTGGCTCCGTTCGCACCAGGCAGTTGCCCAAACGATCCGTTCAGAACGGAAAAATCAAAAACGCGCC > NC_000913/4560064‑4560553 | gCTCCGACAAATTTAAACACCAGGATGACGGCTAAAGGTACGATTACGGACGTGCCCAGAAAGGCAAACACCGCGACGCCGGAAGAGAAGTAGTTGGTGATGATGGCGCTACCGCTGGTTTGATATGCGGCGAAAATCACTTTATCGCGTTCGGTAATTTCACCTTCCTGCGCCAGCTCTTTGGTCATACCGGCGGCGGCATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCAGGAAt < 1:132547/251‑1 (MQ=255) aaaTTTAAACACCAGGATGACGGCTAAAGGTACGATTACGGACGTGCCCAGAAAGGCAAACACCGCGACGCCGGAAGAGAAGTAGTTGGTGATGATGGCGCTACCGCTGGTTTGATATGCGGCGAAAATCACTTTATCGCGTTCGGTAATTTCACCTTCCTGCGCCAGCTCTTTGGTCATACCGGCGGCGGCATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCAGGAATGCCcaaca < 1:383385/251‑1 (MQ=255) acCAGGATGACGGCTAAAGGTACGATTACGGACGTGCCCAGAAAGGCAAACACCGCGACGCCGGAAGAGAAGTAGTTGGTGATGATGGCGCTACCGCTGGTTTGATATGCGGCGAAAATCACTTTATCGCGTTCGGTAATTTCACCTTCCTGCGCCAGCTCTTTGGTCATACCGGCGGCGGCATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCAGGAATGCCCAACAACGGtttt > 1:295012/1‑249 (MQ=255) aTGACGGCTAAAGGTACGATTACGGACGTGCCCAGAAAGGCAAACACCGCGACGCCGGAAGAGAAGTAGTTGGTGATGATGGCGCTACCGCTGGTTTGATATGCGGCGAAAATCACTTTATCGCGTTCGGTAATTTCACCTTCCTGCGCCAGCTCTTTGGTCATACCGGCGGCGGCATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCAGGAATGCCCAACAACGGTTTTAGCACAgg > 1:108465/1‑251 (MQ=255) tGACGGCTAAAGGTAAGATTACGGACGTGCCCAGAAAGGCAAACACCGCGACGCCGGAAGCGAAGTAGTTGGTGATGATGGCGCTACCGCTGGTTTGATATGCGGCGAAAATCACTTTATCGCGTTCGGTAATTTCACCTTCCTGCGACAGCTCTTTGGTCATACCGGCGGCGGCATCGGTGTTTTGCAGGTGAGCGATCAGCGCCAGCGAGCAGGTCCCAGGAATGCCAAACAACGGTTTTAGCACAgt > 2:371621/1‑249 (MQ=255) cGGCTAAAGGTACGATTACGGACGTGCCCAGAAAGGCAAACACCGCGACGCCGGAAGAGAAGTAGTTGGTGATGATGGCGCTACCGCTGGTTTGATATGCGGCTAAAATCACTTTAGCGCGTTCGGTAATTGCGCCTTCCTGCGCCAGCTCTTTGGTCATACCGGCGGCGGCATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCAGGAATGCCCAACAACGGTTTTAGCACAGGTGTc < 1:356915/251‑1 (MQ=255) aaaGGTACGATTACGGACGTGCCCAGAAAGGCAAACACCGCGACGCCGGAAGAGAAGTAGTTGGTGATGATGGCGCTACCGCTGGTTTGATATGCGGCGAAAATCACTTTATCGCGTTCGGTAATTGCACCTTCCTGCGCCAGCTCTTTGGTCATACCGGCGGCGGCATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCAGGAATGCCCAACAACGGTTTTAGCACAGGTGTCAtt < 1:332220/249‑1 (MQ=255) gattacgggtgtgtcaaGAAAGGCAAACACCGCGACTCCGGAAGAGAAGTAGTTGGGGATGATGGCGCGACCGCTGGTTTGATTTGCGGCGAAAATCACTTTATCGCGTTCGGTAATTTCACCTTCCTGCGCCAGCTCGTTGGTCATACCGGCGGCGGCAGCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGAGCCCAGGAATGCCCAACAACGGTTTTAGCACAGGTGTCATTAACTGCTgcg < 2:298357/235‑1 (MQ=255) atACGGACGTGCCCAGAAAGGCAAACACCGCGACGCCGGAAGAGAAGTAGTTGGTGATGATGGCGCTACCGCTGGTTTGATATGCGGCGAAAATCACTTTATCGCGTTCGGTAATTTCACCTTCCTGCGCCAGCTCTTTGGTCATACCGGCGGCGGCATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCTGGAATGCCCAACAACGGTTTTAGCACAGGTGTCATTAACTGCTgcgcg < 1:10544/250‑1 (MQ=255) gCCCAGAAAGGCAAACACCGCGACGCCGGAAGAGAAGTAGTTGGTGATGATGGCGCTACCGCTGGTTTGATATGCGGCGAAAATCACTTTATCGCGTTCGGTAATTTCACCTTCCTGCGCCAGCTCTTTGGTCATACCGGCGGCGGCATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCAGGAATGCCCAACAACGGTTTTAGCACAGGTGTCATTAACTGCTGCGCGGCGCGTAATc > 1:40630/1‑251 (MQ=255) ccgagcgtgACGCAGGAAGAGAATTAGTTTGTGATGATGTCGTTACCGCGTGTTTGTTATGCTGCGAAAATCACTTTATCGCGTTCGGTAATTTCTCCTTCCTTCTCCATCTCGTTGGTCATACCGGCGGCGGCATCTGTGTTTTGCAGGTTAGCGATCAGCGCCCGCGAGCAGATCCCAGGAATGCCCAACAACGGTTTTAGCACAGGTGTCATTATCTGCTGCGCGTCGCGTAATCCTCCAAGCCCATc < 2:212786/243‑1 (MQ=255) cacCGCGACGCCGGAAGAGAAGTAGTTGGTGATGATGGCGCTACCGCTGGTTTGATATGCGGCGAAAATCACTTTATCGCGTTCGGTAATTTCACCTTCCTGCGCCAGCTCTTTGGTCATACCGGCGGCGGCATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCAGGAATGCCCAACAACGGTTTTAGCACAGGTGTCATTAACTGCTGCGCGGCGCGTAATCCACCAAGACCATCgg > 1:264249/1‑251 (MQ=255) cgacgaCGGAAGAGAAGTATATGGTGATGATGGCGCTACCTCTGGATTGACATGCGTCGAAAATACCTTTATCGCGTTCGGTAATTTCGCCTTCCTGCGCCAGCTCTTTGATCATTCCCTCGGCGGCATCGGTGTTTTGCAGGTGTGCTAGCAGCGCCAGTGGGCATATCCCAGGAATGCCCAACAACGGTTTTAGCACAGGTGTCATTAACTGCTGCGCGGCTCGTAATCCACCCAGACCATCGGCAAtg < 2:30144/251‑2 (MQ=255) cgACGCCGGAAGAGAAGTAGTTGGTGATGATGGCGCTACCGCTGGTTTGATATGCGGCGAAAATCACTTTATCGCGTTCGGTAATTTCACCTTCCTGCGCCAGCTCTTTGGTCATACCGGCGGCGGCATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCAGGAATGCCCAACAACGGTTTTAGCACAGGTGTCATTAACTGCTGCGCGGCGCGTAATCCACCAAGACCATc > 1:212786/1‑244 (MQ=255) cgACGCCGGAAGAGAAGTAGTTGGTGATGATGGCGCTACCGCTGGTTTGATATGCGGCGAAAATCACTTTATCGCGTTCGGTAATTTCACCTTCCTGCGCCAGCTCTTTGGTCATACCGGCGGCGGCATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCAGGAATGCCCAACAACGGTTTTAGCACAGGTGTCATTAACTGCTGCGCGGCGCGTAATCCACCAAGACCATCGGTAAtt > 1:371299/1‑251 (MQ=255) aaGAGAAGTAGTTGGTGATGATGGCGCTACCGCTGGTTTGATATGCGGCGAAAATCACTTTATCGCGTTCGGTAATTTCACCTTCCTGCGCCAGCTCTTTGGTCATACCGGCGGCGGCATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCAGGAATGCCCAACAACGGTTTTAGCACAGGTGTCATTAACTGCTGCGCGGCGCGTAATCCACCAAGACCATCGGTAATTGAAATAATc > 1:325754/1‑251 (MQ=255) ggtgtgcatgGCGCTCGCGCTGGTTTGATATGCGGCGATAAGCACTTTATCGCGTGCGGTAATTTCTCCTTCCTTCGCCAGCTCTTTGGTCATACCGGCTGCTGCATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCAGGAATGCCCAACAACGGTTTTAGCTCAGGTGTCATTAACTGCTGCGCGGCGCGTAATCCACCAAGACCATCGGTAATTTATACAATCCCCagagagata < 2:325754/243‑3 (MQ=255) cTACCGCTGGTTTGATATGCGGCGCAAATCACTTTATCGCGTTCGGTAATTTCACCTTCCTGCGCCAGCTCTTTGGTCATACCGGCGGCGGCATCGGTGTTTTGCAGGTTAGCGATCCGCGCCAGCGGGCAGATCCCAGGAATGCCCAACAACGGTTTTAGCACAGGTGTCATTAACTGCTGCGCGACGCGAAATCCACCAAGACCATCGGTAATTGAAATAATCCCCAGAGAGAGAATGACTGACGGTGc > 2:67938/1‑251 (MQ=255) tGGTTTGATATGCGGCGAAAATCACTTTATCGCGTTCGGTAATTTCACCTTCATGCGCCAGCTCTTTGGTCATACCGGCGGCGGCATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCAGGAATGCCCAACAACGGCTTTAGCACAGGTGTCATTAACTGCTGCGCGGCGCGTAATCAACCATGACCATCAGTAATTGAAATAATCACCAGAGAGAGAATGACTGACGGTGCCAGCTcc > 2:85703/1‑251 (MQ=255) aaaaTCACTTTATCGCGTTCGGTAATTTCACCTTCCTGCGCCAGCTCTTTGGTCATACCGGCGGCGGCATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCAGGAATGCCCAACAACGGTTTTAGCACAGGTGTCATTAACTGCTGCGCGGCGCGTAATCCACCACGACCATCGGTAATTGAAATAATCCCCAGAGAGAGAATGACTGACGGTGCCAGCTCCAGCGCAAAGAGAAAGcc > 1:285001/1‑251 (MQ=255) tAATTTCACCTTCCTGCGCCAGCTCTTTGGTCATACCGGCGGCGGCATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCAGGAATGCCCAACAACGGTTTTAGCACAGGTGTCATTAACTGCTGCGCGGCGCGTAATCCACCAAGACCATCGGTAATTGAAATAATCCCCAGCGAGAGAATGACTGACGGTGCCAGCTCCAGCGCAAAGAGAAAGCCATCTTTAGCCCCCGCGCCAccc > 1:264613/1‑251 (MQ=255) ccccTTCCTGCGCCAGCTCTTTGGTCATACCGGCGGCGGCATCGGTGTTGTGCAGGTTAGCGATCAGCGCCAGCGAGCAGAGCCCAGGAATGCCCAACAACGGTTTGAGCACAGGGGTCATTAACTGCTGCGCGGCGCGTAATCCACCAAGACCATCGGTAATTGAAATAATCCCCAGAGAGAGAATGACTGACGGTGCCATCTCCAGCGCAAAGAGAAAGCCATCTTTAGCCCCCGCGCCACccgcgcc < 2:40630/248‑1 (MQ=255) aCCGGCGGCGGCATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCAGGAATGCCCAACAACGGTTTTAGCACAGGTGTCATTAACTGCTGCGCGGCGCGTAATCCACCAAGACCATCGGTAATTGAAATAATCCCCTGAGAGAGAATGACTGACGGTGCCAGCTCCAGCGCAAAGAGAAAGCCATCTTTAGCCCCCGCGCCACCCGCGCCGCGAAATGAGGTGGTGGCTCCGTTCGCAc > 1:171684/1‑251 (MQ=255) gcggcggcATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCTGGAATGCCCAAAAACGGTTTTAGCACAGGTGTCATTAACTGCTGCGCGGCGCGTAATCCACCAAGACCATCGGTAATTGAAATAATCCCCAGAGAGAGAATGACTGACGGTGCCAGCTCCAGCGCAAAGAGAAAGCCATCTTTAGCCCCCGCGCCACCCGCGCCGCGAAATGAGGTGGTGGCTCCGTTCGCACCAgg < 1:165255/251‑1 (MQ=255) cggcATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCAGGAATGCCCAACAACGGTTTTAGCACAGGTGTCATTAACTGCTGCGCGGCGCGTAATCCACCAAGACCATCGGTAATTGAAATAATCCCCAGAGAGAGAATGACTGACGGTGCCAGCTCCAGCGCAAAGAGAAAGCCATCTTTAGCCCCCGCGCCACCCGCGCCGCGAAATGAGGTGGTGGCTCCGTTCGCACCAGGCAGt > 1:199217/1‑251 (MQ=255) ggcATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCAGGAATGCCCAACAACGGTTTTAGCACATGTGTCATTAACTGCTGCGCGGCGCGTAATCCACCAAGACCATCGGTAATTGAAATAATCCCCAGAGAGAGAATGACTGACGGTGCCAGCTCCAGCGCAAAGAGAAAGCCATCTTTAGCCCCCGCGCCACCCGCGCCGCGAAATGAGGTGGTGGCTCCGTTCGCACCAGGCAGtt < 1:27119/251‑1 (MQ=255) cggggttgtGCAGGGTAGCGATCAGGGCCAGCGAGCAGAGCCCAGGAGTGCCCAACAGCGGGGTTAGCACAGGTGTCATTAACTGCGGCGCGGCGCGTAAGCCACCAAGACCATCGGTAATTGAAATAAGCCCCAGAGAGAGAATGACTGACGGTGCCAGCGCCAGCGCAAAGAGAAAGCCATCTTTAGCCCCCGCGCCACCCGCGCCGCGAAATGAGGTGGTGGCTCCGTTCGCGCCAggg < 2:82418/234‑2 (MQ=255) cGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCAGGAATGCCCAACAACGGTTTTAGCACAGGTGTCATTAACTGCTGCGCGGCGCGTAATCCACCAAGACCATCGGTAATTGAAATAATCCCCAGAGAGAGAATGACTGACGGTGCCAGCTCCAGCGCAAAGAGAAAGCCATCTTTAGCCCCCGCGCCACCCGCGCCGCGAAATGAGGTGGTGGCTCCGTTCGCACCAGGc > 1:82418/1‑242 (MQ=255) gCAGGTTAGCGATCAGCGCCAGCGAGCATATCCCAGGATGGCCCAACAACGGTGGTAGCACAGGTGTCATTAACTGCTGCTCGGCACGTAATCCACCAAGACCATCGGTAATTGAAATAATCCCCAGATAGAGATTGACTGACGGTGCCAGCTCCAGCGCAAAGAGAAAGCCAGCTTTAGCCCTCGCGCCACCCGCGCCTCGAAATGAGGTGGTGGCTCCGTTCGCACCAGGCAGTTGCCCAAAAGATcc < 2:363741/250‑1 (MQ=255) cAGCGCCAGCGAGCAGATCCCAGGAATGCCCAACAACGGTTTTAGCACAGGTGTCATTAACTGCTGCGCGGCGCGTAATCCACCAAGACCATCGGTAATTGAAATAATCCCCAGAGAGAGAATGACTGACGGTGCCAGCTCCAGCGCAAAGAGAAAGCCATCTTTAGCCCCCGCGCCACCCGCGCCGCGAAATGAGGTGGTGGCTCCGTTCGCACCAGGCAGTTGCCCAAACGATCCGTTCAGAACGGaa < 1:68194/250‑1 (MQ=255) gATCCCAGGAATGCCCAACAACGGTTTTAGCACAGGTGTCATTAACTGCTGCGCGGCGCGTAATCCACCAAGACCATCGGTAATTGAAATAATCCCCAGAGAGAGAATGACTGACGGTGCCAGCTCCAGCGCAAAGAGAAAGCCATCTTTAGCCCCCGCGCCACCCGCGCCGCGAAATGAGGTGGTGGCTCCGTTCGCACCAGGCAGTTGCCCAAACGATCCGTTCAGAACGGAAAAATCAAAAACGCGcc < 1:85703/251‑1 (MQ=255) | GCTCCGACAAATTTAAACACCAGGATGACGGCTAAAGGTACGATTACGGACGTGCCCAGAAAGGCAAACACCGCGACGCCGGAAGAGAAGTAGTTGGTGATGATGGCGCTACCGCTGGTTTGATATGCGGCGAAAATCACTTTATCGCGTTCGGTAATTTCACCTTCCTGCGCCAGCTCTTTGGTCATACCGGCGGCGGCATCGGTGTTTTGCAGGTTAGCGATCAGCGCCAGCGAGCAGATCCCTGGAATGCCCAACAACGGTTTTAGCACAGGTGTCATTAACTGCTGCGCGGCGCGTAATCCACCAAGACCATCGGTAATTGAAATAATCCCCAGAGAGAGAATGACTGACGGTGCCAGCTCCAGCGCAAAGAGAAAGCCATCTTTAGCCCCCGCGCCACCCGCGCCGCGAAATGAGGTGGTGGCTCCGTTCGCACCAGGCAGTTGCCCAAACGATCCGTTCAGAACGGAAAAATCAAAAACGCGCC > NC_000913/4560064‑4560553 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |