| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,535,189 | C→T | intergenic (‑1136/‑1408) | topAI ← / → ythB | toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/protein YthB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,535,189 | 0 | C | T | 93.1% | 75.8 / ‑4.3 | 30 | intergenic (‑1136/‑1408) | topAI/ythB | toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/protein YthB |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (10/17); minor base G (1/1); total (12/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.79e-01 | |||||||||||
ACTCACTTTGCTATCACGGTAAGTTGCAGCCTAAAAGAGGGATGGAAAAAGGACGATTTTCCCCGCAATGGGATATTTACATATTGATGGTAGAGGCATGAAGCCAAATGGAGGGAGCCGTCATAACCCTCTTGAAGCTGAAACAATAGCAGCATGGCTGGTGGCACATAAGGATGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGCAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGCAGGGTTTACTGACAGTGGGGACTGTGCACTCCTTGCAGGGGGCGGAAAGGGCGATTGTTCTCTTTTCTCCTGTCTACTCAAAACATGAAGATGGCAGGTTTCTTGATAGCAACAGCACTATCCTCAATGTTGCTGTCTCACGCGCTAAAGATAGTTTTCTGGTATTTG > NC_000913/4534948‑4535414 | aCTCACTTTGCTATCACGGTAAGTTGCAGCCTAAAAGAGGGATGGAACAAGGACGATTTTCCCCGCAATGGGCTATTTACATATTGATGGTAGAGGCGTGAAGCCAAATGGAGGGAGCCGTCATAGCCCTCTTGAAGCTGAAACAATAGCAGCATGGCTGGTGGCACATAAGGATGATATAGACCGCCATTCCGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCAGTTTTCGGCGTAGGTTAATg > 2:379544/1‑251 (MQ=255)aCTCACTTTGCTATCACGGTAAGATGCAGCCTAAAAGAGGGATGGAAAAAGGACGATTTTCCCCGCAATGGGATATTTACATATTGATGGTAGAGGCATGAAGCCAAATGGAGGGAGCCGTCATAGCCCTCTTGAAGCTGAAAAAATAGCAGCATGGCTGGGGGCACATACGGATGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTCGGTTAATg > 2:323652/1‑251 (MQ=255)aCTCACGTTGCTATCACGGTAAGTTGCAGCCTAAAAGAGGGATGGAAAAAGGACGATTTTCCCCGCAATGGGATATTTACATATTGATGGTAGAGGCATGAAGCCAAATGGAGGGAGCCGTCATAGCCCTCTTGAAGCTGAAACAATAGCAGCATGGCTGGTGGCACATAAGGATGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATg < 1:219358/251‑1 (MQ=255) gTTGCAGCCTAAAAGAGGGATGGAAAAAGGACGATTTTCCCCGCAATGGGATATTTACATATTGATGGTAGAGGCATGAAGCCAAATGGAGGGAGCCGTCATAGCCCTCTTGAAGCTGAAACAATAGCAGCATGGCTGGTGGCACATAAGGATGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTATCAAAATGTCATTGCGTaa < 1:284278/251‑1 (MQ=255) cAGCCTAAAAGAGGGATGGAAAAAGGACGATTTTCCCCGCAATGGGATATTTACATATTGATGGTAGAGGCATGAAGCCAAATGGAGGGAGCCGTCATAGCCCTCTTGAAGCTGAAACAATAGCAGCATGGCTGGTGGCACATAAGGATGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTg > 1:367343/1‑251 (MQ=255) aaaGAGGGATGGAACAAGGACGATTTTCCCCGCAATGGGATATTTACATATTGATGGTAGAGGCATGAAGCCAAATGGAGGGAGCCGTCATAGCCCTCTTGAAGCTGAAACAATAGCAGCATGGCTGGTGGCCCATAAGGATGATATAGAGCGCCATTACGGGGAACCACTGTCCAACGTTGTTGGTGTTGTGACGCCATTTTCGGCGGAGGTTAATGCTCTCAAAATGTCATTGCGTACGCTGGAAAttt > 2:245063/1‑250 (MQ=255) aaaGGACGATTTTCCCCGCAATGGGATATTTACATATTGATGGTAGAGGCATGAAGCCAAATGGAGGGAGCCGTCATAGCCCTCTTGAAGCTGAAACAATAGCAGCATGGCTGGTGGCACATAAGGATGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAg < 1:323652/251‑1 (MQ=255) aaaGGACGATTTTCCCCGCAATGGGATATTTACATATTGATGGTAGAGGCATGAAGCCAAATGGAGGGAGCCGTCATAGCCCTCTTGAAGCTGAAACAATAGCAGCATGGCTGGTGGCACATAAGGATGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGACAAGACg > 1:293343/1‑249 (MQ=255) ggACGATTTTCCCCGCAATGGGATATTTACATATTGATGGTAGAGGCATGAAGCCAAATGGAGGGAGCCGTCATAGCCCTCTTGAAGCTGAAACAATAGCAGCATGGCTGGTGGCACATAAGGATGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGc > 1:132595/1‑249 (MQ=255) aTTTTCCCCGCAATGGGATATTTACATATTTATGGTAGAGGCATGAAGCCAAATGGAGGGAGCCGTCCTAGCCCTCTTGAAGCTGAAACAATAACCGCATGGCTGGTGGCACATAATGCTGATATAGAACGCCATTACGGGGAACCACTGACCAAAGTAGTTGGAGTTGTGAAGCCATTTTCGGCGAAGGTTACTGCTTACAAAATGACATTGCGTGAGCTGGCAATTAATgggacagcagagaagggtgt > 2:260642/1‑233 (MQ=255) tttCCCCGCAATGGGATATTTACATATTGATGGTAGAGGCATGAAGCCAAATGGAGGGAGCCGTCATAGCTCTCTTGAAGCTGAAACAATAGCAGCATGGCTGGTGGCACATAAGGATGATATAGAGCGCCATTACGGGTAACCACTGTACAAAGTTGTTGGGGTTGTGACGCCTTTGGCGGCGTAGGTTAATGCTATCAAAATGGCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGCAGGGTTTa < 1:218769/250‑1 (MQ=255) tttCCCCGCAATGGGATATTTACATATTGATGGTAGAGGCATGAAGCCAAATGGAGGGAGCCGTCATAGCCCTCTTGAAGCTGAAACAATAGCAGCATGGCTGGTGGCACATAAGGATGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGCAGGGTTTa < 1:245063/250‑1 (MQ=255) tatTTACATATTGATGGTAGAGGCATGAAGCCAAATGGAGGGAGCCGTCATAGCCCTCTTGAAGCTGAAACAATAGCAGCATGGCTGGTGGCACATAAGGATGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGCAGGGTTTACTGACAGTGGGGACtgt > 1:163646/1‑251 (MQ=255) atatTGATGGTAGAGGCATGAAGCCAAATGGAGGGAGCCGTCATAGCCCTCTTGAAGCTGAAACAATAGCAGCATGGCTGGTGGCACATAAGGATGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGCAGGGTTTACTGACAGTgggg < 1:170189/239‑1 (MQ=255) atatTGATGGTAGAGGCATGAAGCCAAATGGAGGGAGCCGTCATAGCCCTCTTGAAGCTGAAACAATAGCAGAATGGCTGGTGGCACATCAGGATGCTATAGCGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTATCAAAATGTAATTGCGTAAGCTGGAAATTAATGGCAAAGGCGAGCAGGGTTTACTGCCAGTGGGGagctcgggag > 2:170189/1‑240 (MQ=255) cATAGCCCTCTTGAAGCTGAAACAATAGCAGCATGGCTGGTGGCACATAAGGATGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGCAGGGTTTACTGACAGTGGGGACTGTGCACTCCTTGCAGGGGGCGGAAAGGGCGATTGTTCTCTTTTCTCCTGt < 1:46574/251‑1 (MQ=255) cccTATTGAAGCTGAAACAATATACGCATGGCTGGTGGCACATAAGGATGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGCAGGGTTTACTGACAGTGGGGACTGTGCACTCCTTGCAGGGGGCGGAACGGGCGATTGTTCTCTTTTCTCCTGTCTACt < 2:293343/251‑1 (MQ=255) ccTCTTGAAGCTGAAACAATAGCAGCATGGCTGGTTGCACATAAGGATGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGATGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGCAGGGTTTACTGACAGTGGGGACTGTGCACTCATTGCAGGGGGCGGAAAGGGCGATGGTTCTCTTTTCTTCTGTCTACTc > 2:203444/1‑251 (MQ=255) cgtGAAGTTGAAACAATAGCAGCATGGCTGGTGTCACATAAGGTTGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGGAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGCAGGGTTTACTGTCAGTGGGGACTGTGCACTCCTTGCAGGGGGCGGAAAGTGCTACTGTTCTCTTTTCTCCTGTTTACTCa < 2:343899/247‑1 (MQ=255) gAAGCTGAAACAATAGCAGCATGGCTGGTGGCACATAAGGATGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGCAGGGTTTACTGACAGTGGGGACTGTGCACTCCTTGCAGGGGGCGGAAAGGGCGATTGTTCTCTTTTCTCCTGTCTACTCAAAACa < 1:379544/251‑1 (MQ=255) aaGCTGAAACAATAGCAGCATGGCTGGTGGCACATAAGGATGATATAGAGAGCCATTACGGGGTACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTATCAAATTGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGCAGGGTTTACTGACAGTTGGGACTGTGAACTCCTTGCAGGGGGCGGAAAGGGCGATTGTTCTCTTTTCTCCTCTCTACTCAAAACAt < 1:49016/251‑1 (MQ=255) agcagcATGGCTGGTGGCACATAAGGATGATATAGAGAGCCCTTACGCGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGCAGGGTTTACTGACAGTGGGGACTGTGCACTCCTTGCAGGGGGCGGAAAGGGCGATTGTTCTCTTTTCTCCTGTCTACTCAAAACATGCAGATGGCAGGt > 1:323802/1‑251 (MQ=255) aTGGCTTGTGGCACATAAGGATGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTGTCGGCGTAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGCAGGGTTTACTGACAGTGGGGACTGTGCACTCCTTGCAGGGGGCGGAAAGGGCGATTGTGCTCTTTTCTCCTGTCTACTCAAAACATGAAGATGGCAGTTTTCTTg < 2:163646/251‑1 (MQ=255) ggcggggggtacctAAGGATGATAGTGAGCGCCTTTCTGTGGAGCCACTGTAAAAAGTTGTTGGGGTTGGGTCGCTAGTTTCGGTTTATGTTTATGCGATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGATTAGGGTTTTCTGACAGTGGGGACTGTGCACTCCTTTCAGGGTGCGGTAAGTGCGTTTGTTCTCTTTTTTCCTGTCTACTCAAAATATGAAGAGGGCAGGtttagtgat < 2:323802/238‑7 (MQ=255) ggCACATAAGGATGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGCAGGGTTTACTGACAGTGGGGACTGTGCACTCCTTGCAGGGGGCGGAAAGGGCGATTGTTCTCTTTTCTCCTGTCTACTCAAAACATGAAGATGGCAGGTTTCTTGATAGCAAc < 1:112373/250‑1 (MQ=255) acaTAAGGTTGATATAGAGCGCCATTACGGGGAACCACTGGACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGCAGGGGTTACTGACAGTGGGGACTGTTCACTCCTTGCAGGGGGCGGAAAGGGCGATTGTTCTCTTTTCTCCTGTCTACTCAAAACATGAAGATGGCAGGTTTCTTGATAGCAACAGCa < 1:246352/251‑1 (MQ=255) tAAGGATGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGCAGGGTTTACTGACAGTGGGGACTGTGCACTCCTTGCAGGGGGCGGAAAGGGCGa > 1:53609/1‑185 (MQ=255) tAAGGATGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGCAGGGTTTACTGACAGTGGGGACTGTGCACTCCTTGCAGGGGGCGGAAAGGGCGa < 2:53609/185‑1 (MQ=255) aaCCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTAGCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGCAGTGTTTACTGACAGTGGGGACTGTGCACTCCTTGCAGGGGGCGGAAAGGGCGATTGTTCTCTTTTCTCCTGTCTACTCAAAACATGAAGATGGCAGGTTTCTTGATAGCAACAGCACTAGCCCCAATGTTGCTGTCTCACGCGCTaaa < 1:142241/251‑1 (MQ=255) ggTGTTGTGACGCCATTTTCGGCGTAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGCAGGGTTTACTGACAGTGGGGACTGTGCACTCCTTGCAGGGGGCGGAAAGGGCGATTGTTCTCTTGTCTCCTGTCTACTCAAAACATGAAGATGGCAGGTTTCTTGATAGCAACAGCACGATCCTCAATGGTGCTGTCTCACGCGCTAAAGATAGTTTTCTGGTATTTg < 2:175961/250‑1 (MQ=255) | ACTCACTTTGCTATCACGGTAAGTTGCAGCCTAAAAGAGGGATGGAAAAAGGACGATTTTCCCCGCAATGGGATATTTACATATTGATGGTAGAGGCATGAAGCCAAATGGAGGGAGCCGTCATAACCCTCTTGAAGCTGAAACAATAGCAGCATGGCTGGTGGCACATAAGGATGATATAGAGCGCCATTACGGGGAACCACTGTACAAAGTTGTTGGTGTTGTGACGCCATTTTCGGCGCAGGTTAATGCTATCAAAATGTCATTGCGTAAGCTGGAAATTAATGGCAAAGACGAGCAGGGTTTACTGACAGTGGGGACTGTGCACTCCTTGCAGGGGGCGGAAAGGGCGATTGTTCTCTTTTCTCCTGTCTACTCAAAACATGAAGATGGCAGGTTTCTTGATAGCAACAGCACTATCCTCAATGTTGCTGTCTCACGCGCTAAAGATAGTTTTCTGGTATTTG > NC_000913/4534948‑4535414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |