| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,530,252 | C→A | intergenic (‑9/+3) | sgcC ← / ← sgcB | putative PTS enzyme IIC component SgcC/putative PTS enzyme IIB component SgcB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,530,252 | 0 | C | A | 88.9% | 83.7 / 2.2 | 36 | intergenic (‑9/+3) | sgcC/sgcB | putative PTS enzyme IIC component SgcC/putative PTS enzyme IIB component SgcB |
| Reads supporting (aligned to +/- strand): ref base C (2/2); new base A (15/17); total (17/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.41e-01 | |||||||||||
CTGCGCCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCAGGGCGGCGCCATTAAGCGTAGGGATGCCGTAATCACTGTTGGTTCGCATGGAGGTTACAATAAGGTCCATACCGTTACAGTTAAGAGGGATCTCATTCAGACAGCATTGGGCGGTAGTGGCTGAAATGCCCTGTTCAGTCAGGAACTCTTGCAGCTTGTGTGCAATCATGGTTGAA > NC_000913/4530006‑4530492 | cTGCGCCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCAtttt > 1:183011/1‑251 (MQ=255) cGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGtt > 1:106198/1‑250 (MQ=255) tcagaGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTaa > 1:79868/5‑250 (MQ=255) aaaaGACAGGCAGGGCTAGGCCGAAACCCTCAATCACCCCTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAACCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTAACa < 1:380861/250‑1 (MQ=255) aGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGAACAGGCAAATCACAATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGAGGTAATCCACCAGAATTCCTCATTTTATTGAGTAAACGAAGACTTGATTtgttgt > 2:321899/1‑251 (MQ=255) ggCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTACCAGAGCCTTGATTTgttgtt > 1:353252/1‑251 (MQ=255) tCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAACACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGCGTTAACAGAGCCTTGATTTGTTGTTTTACCGcgtcg > 1:209801/1‑251 (MQ=255) atcaCTGTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCTTCCCGACAAAACCAATCCCAACCGTTCCCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGAGCATGATGATAGGGACGAAAACGTTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTg < 1:201434/251‑1 (MQ=255) ccttggatgggggaACTGAGCCTGTCGATCGCCATGACGACCACCAGCCCCATCCCGAAAAAACCAATCCAAACCGTTACCCCTGCCTTAATCGCCTGCAGCAAGGGGATGCGGAAAATAAGGCAAATCCCAATAATGATGATAGGGACAAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATc < 2:163141/242‑1 (MQ=255) gTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCAGGGCGGCGCCAtt > 1:124574/1‑251 (MQ=255) aTCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCAGGGCGGCGCCATTAAGCTTAGGGATGCCg > 1:170259/1‑251 (MQ=255) ccAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCACAAATAATGCCTCATTTTATTGTGTTAACAGAGCCTTGCTTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCGGGGCGGCGCCTTTAAGCgatgggaggccgacat > 2:11707/1‑236 (MQ=255) aGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATACTGCCTCATTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGCTCCCTGTGAGCAGGGCGGCGCCATTAAGCGTAGGGCTGCCGTAATcc > 1:68286/1‑250 (MQ=255) gACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCAGGGCGGCGCCATTAAGCGTAGGGATGCCGTAATCACTGTTGGTTCg > 1:136623/1‑251 (MQ=255) cAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAACACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTTATCCCTGTGAGCAGGGCGGCGCCATTAAGCGTAGGGATGACGTAATCACTGTTGGTTCGct > 2:77341/1‑250 (MQ=255) acccatccccACCCGTTACCCCTGCCTAAATCGCCGGCAGCCGGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCAGGGCGGCGCCATTAAGCGTAGGGATGCCGTAATCACTGTTGGTTCGCATgg < 1:197667/244‑1 (MQ=255) aagaaagcccAACCGTCACACCTGCCGAAATCGCCTGAAGCAAGGGGATGCGGAAGATAAGGCCAAGCACGAAAAGGATGAAAGGGACGAAAACGGAACCGCCGAGAGACAGGATGTAATCAAACAGAATGCCGCATTTTATTGAGTTAACAGAGCTTTGATTTGTTGTTGTAACGCGTCTCCGTTGATCCCTGTGAGCAGGGCGGCGCCATTAAGCGTAGGGATGCCGTAATCACTGTTGGTTCGCATgg < 1:365382/244‑1 (MQ=255) tACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCAGGGCGGCGCCATTAAGCGTAGGGATGCCGTAATCACTGTTGGTTCGCATGGAGGTTACAATAAGGt < 1:21084/250‑1 (MQ=255) tACCCCTGCCTTAAGCGCCCGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGACAATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCAGGGCGGCGCCATTAAGCGTAGGGATGCCGTAATCACTGTTGGTTCGCATGGAGGTTACAATAAGGt < 1:244285/250‑1 (MQ=255) aCCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCAGGGCGGCGCCATTAAGCGTAGGGATGCCGTAATCACTGTTGGTTCGCATGGAGGTTACAATAGGGTc < 1:77341/250‑1 (MQ=255) aCCCCTGCATTAACCGCCTGCAGCCGGGGGATGCGGAAAATAAGGCCAATCACGATCATGATGATAGGTACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCAGGGCGGCGCCATTAAGCGTAGGGATGCCGTAATCACTGTTGGTTCGCATGGAGGTTACAATAAGGTc < 1:154596/250‑1 (MQ=255) gtcTTAACCGCCTGCATCGAGGGGAGGCGGAAGACAAGGCAAATCACAATCTTGAAGAGAGGGTCAAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTATCGCGTCGTCGTTGATCCCTGGGAGCAGGGCGGCGCCATTAAGCGTAGGGATGCCGTAATCCCTTTTGGTTCGCATGGAGGTTACAATAAGGTCCATAcc < 2:283827/248‑1 (MQ=255) ccTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGCTCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCAGGGCGGCGCCATTAAGCGTAGGGATGCCGTAATCACTGTTGGTTCGCATGGAGGTTACAATAAGGTCCATACCGt > 1:286884/1‑251 (MQ=255) gcaaccAGTGGATGCGGAAGAAAAGGCCAATCACGATCATGTTGATAGGGACGAAACCGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCAGGGCGGCGCCATTAAGCGTAGGGATGCCGTAATCACTGTTGGTTCGCATGGAGGTTACAATAAGGTCCATACCGTTACAGTTAagag < 1:11707/247‑1 (MQ=255) tCACGCTCATGATGATAGGGACGAACACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGGGAGCAGGGCGGCGCCATTAAGCGTAGGGATGCCGTAATCACTGTTGGTTCGCATGGAGGTTACAATAAGGTCCATACCGTTACAGTTCAGAGGGATCTCATTCAGCAAGAATTGGGCGGt > 2:263279/1‑249 (MQ=255) cGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCAGGGCGGCGCCATTAAGCGTAGGGATGCCGTAATCACTGTTGGTTCGCATGGAGGTTACAATAAGGTCCATACCGTTACAGTTAAGAGGGATCTCATTCAGACAGCATTGGGCGGTAGTgg > 1:15464/1‑251 (MQ=255) gATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCAGGGCGGCGCCATTAAGCGTAGGGATGCCGTAATCACTGTTGGTTCGCATGGAGGTTACAATAAGGTCCATACCGTTACAGTTAAGAGGGATCTCATTCAGACAg > 1:293694/1‑234 (MQ=255) atgatgATAGGGTCTAAATCGGGACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCAGGGCGGCGCCATTATGCGTAGGGATTCCGTAATCACTGTTGGTTCGCATGGAGTTTACAATAAGGTCCATACCGTTACAGTTAAGAGGGATCTCATTCAGACAGCATTGGGCGGTAGTGGCTGa < 1:50176/250‑1 (MQ=255) ggtaatgcgtgaagaaactggcccgccaAGAGACATGATGTAACTAAACATCATCACTCATTTCATTGAGTTAACAGAGCCCTGATTTGTTTTTGTAACTCGTCGTCGGTGAACCCTGTGAGCAGGACGGCGTCATGAATCGTAGGGATGCCGTAATCACTGTTTGTGCGCATGGAGGTTACAATAAGGTCCATACCGTTACAGTTAAGAGGGATCTCACGCAGACAGCAATGGGCGGTATTGGCTGaaaa < 2:176102/229‑2 (MQ=255) atgaaagagacgcaacaggTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGACTTGCTTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGGGAGCAGGGCGGCGCCATTAAGCGTAGGGATGACGTAATCACTGTTGGTTCGCATGGAGGTTACAATAAAGACCATCCCGTTACAGTTAAGAGGGATCTCATTCAGTATGCCTTGGCGGGTAGTGGCTGacttg > 2:256421/18‑247 (MQ=255) aactAGGGACAAAATCGATACCGCCGAGATACATGATGTAATCAAACATAATGCCACAGTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAGCGCGTTGTCGTTGATCCCTGTGAGCATGGCGGCGCAATTAATCGTAGGGATGCCTTAATCAGTGTTGGTTCGTCTGGAGTTTACAATAAGTTTCATTTCGTTACAGTTAATAGGTATCTCATTTTGACAGCTTTGGGCGGTATTGGCTGAAATGc < 2:253246/248‑1 (MQ=255) agAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCAGGGCGGCGCCATTAAGCGTAGGGATGCCGTAATCACTGTTGGTTCGCATGGAGGTTACAATAAGGTCCATACCGTTACAGTTAAGAGGGATCTCATTCAGACAGCATTGGGCGGTAGTGGCTGAAATGCCCTGTtcag < 1:263279/250‑1 (MQ=255) aaatggtgccgccgAGAGACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGGCGTTGATCCCTGTGAGCAGGGCGGCGCCATTAAGCGTAGGGATGCCGTAATCACTGTTGGTTCGCATGGAGGTTACAATAAGGTCCATACCGTTACAGTTAAGAGGGATCTCATTCAGACAGCATTGGGCGGTAGTGGCTGAAATGCCCTGTtcagtca < 1:2465/243‑1 (MQ=255) accggtccgccgAGGTACAGGATGTAATCAAACATAATGCCTCATTTTATTGAGTTAACAGCGCCGTGATTTGTTGTTTTAACGCGTCGTCGTTGAGCCCGGTGAGCAGGGCGGCGCCGTTAAGCGTAGGGATGCCGGAAGCACTGTTGGTACGCATGTAGGTTACAATAAGGTCCATACCGTTACAGGTAAGAGGGTTCTCATTCAGACGGCATTGTGCGGTAGTGGCTGAATTGGTCTGTTCATTCAgg < 2:183011/245‑1 (MQ=255) ccgAGAGAAAGGATGTAATCAAACATAATGCCTCATTTTATTTAGTTAACAGAGCCTTGATTTGTTGTGTTAACGCGGCGTCGTTGATCCCTGTGAGCAGGGCGGCGCCATTAAGCGTAGGGATGCCGTAATCACTGTTGGTTCGCATGGAGGTTACAATAAGGTCCATACCGTTACAGTTAAGAGGGATCTCATTCAGACAGCATTGGGCGGTAGTTGCTGAAATGCCCTGTTCAGTCAGGAACTCTTGc < 2:124574/251‑1 (MQ=255) aTAATGCCTCATTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCAGGGCGGCGCCATTAAGCGTAGGGATGCCGTAATCACTGTTGGTTCGCATGGAGGTTACAATAAGGTCCATACCGTTACAGTTAAGAGGGATCTCATTCAGACAGCATTGGGCGGTAGTGGCTGAAATGCCCTGTTCAGTCAGGAACTCTTGCAGCTTGTGTGCAATCATGGTTGaa < 1:321898/251‑1 (MQ=255) | CTGCGCCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCAGGGCGGCGCCATTAAGCGTAGGGATGCCGTAATCACTGTTGGTTCGCATGGAGGTTACAATAAGGTCCATACCGTTACAGTTAAGAGGGATCTCATTCAGACAGCATTGGGCGGTAGTGGCTGAAATGCCCTGTTCAGTCAGGAACTCTTGCAGCTTGTGTGCAATCATGGTTGAA > NC_000913/4530006‑4530492 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |