| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,516,959 | C→T | P253P (CCG→CCA) | fecR ← | ferric citrate regulator FecR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,516,959 | 0 | C | T | 88.9% | 54.8 / ‑3.2 | 29 | P253P (CCG→CCA) | fecR | ferric citrate regulator FecR |
| Reads supporting (aligned to +/- strand): ref base C (2/1); new base T (8/16); total (12/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.35e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 | |||||||||||
AAGGGTAAAAAGGACAATCGAAATAAGAATTATTTTCCTTACAGTGGTGAAATGTTTATCCAGTACCGCGTAATAGACTGAATTTTAACGGGAAGCGTTTGCGCGATAACGTTCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGATCGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTATCACCTCACCCA‑GCGGTTTATCGCTGAAGCTCAGGATGTCCTTCGTCCAGCTTGTACTCTCGTCATCCAGCGGTTTCACTGCGCCAAACTCAGAGGCGCTGAACTGCAGGCTTTCACCAGCGTTCACGATGCGTTTTTGCGCGGGGGCACTGGCGAGAAGCACTTCCACAGCGTGCTGCTGCACGTCAAGCTGCGTGAAATTATCCTGCTGGCGGACGGTAAATTCTGTCCCTAAAGCAGTGAGCTGGCCCTGAC > NC_000913/4516726‑4517200 | aaGGGTAAAAAGGACAATCGAAATAAGAATTATTTTCCTTACAGTGGTGAAATGTTTATCCAGTACCGCGTAATAGGCTGAATTTTAACGGGAAGCGTTTGCGCGATAACGTTCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGATCGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTATCACCTCACCCA‑GTGGTTTATCGCTGAAGCt < 1:2838/251‑1 (MQ=255) agtgTAAAAAGTACAATCTAAATAAGAATTATTTTCCTTACAGTGGTGTAATGTTTATCCAGTACCGCGTAATAGATTGAATTTTAACGGGAAGCGTTTGCGCGATAACGTTCAGGATCGCATCGGTATTTTTCAGCGGTAACTGCCCGCTCAGGTGCAGCCCGGCAACGGCGGCATCGCAGCGCAGCACGCCGTTGCGGTATCGGGTTAGCGTTGCTATCCCCTCACCCT‑GTGGTTTATCGCTGAAGCTc < 2:318787/248‑1 (MQ=255) gACAATCGAAATAAGAATTATTTTCCTTACAGTGGTGAAATGTTTATCCAGTACCGCGTAATAGACTGAATTTTAACGGGAAGCGTTTGCGCGATAACGTTCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCCGCCCGGCAACGGCGGGGTAGCCGCGCAGCACCCCCGCGCGGGAACGGGGTAGCGTGGCTAATAACTCACCCA‑GCGGTTTATTGCTGGAGCTccggttgtgatt > 2:373001/1‑240 (MQ=255) ttACAGTGGTGAAATGTTTATCCAGTTCCTCGTAATAGACTGAATTTTAACGGGAAGCGTTTGCGCTATAACGTTCAGGACCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGATCGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTATCACCTCACCCA‑GTGGTTTATCGCTGAAGCTCAGGATGTCCTTCGTCCAGCTTGTTCTCTCGTCAt < 1:209277/248‑1 (MQ=255) tACAGTGGTGAAATGTTTATCCAGTACCGCGTAATAGACTGAATTTTAACGGGAAGCGTTTGCGCGATAACGTTCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGATCGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTATCACCTCACCCA‑GTGGTTTATCGCTGAAGCTCAGGATGTCCTTCGTCCAGCTTGTACTCTCGTCATcc < 1:107497/249‑1 (MQ=255) ggtgAAATGTTTATCCAGTACCGCGTAATAGACTGAATTTTAACGGGAAGCGTTTGCGCGATAACGTTCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGATCGCAGCGCAGCACGCCGTTGCGGGAACGGGTTAGCGTGGCTATCACCTCCCCCA‑GTGGTTTATCGCTGCAGCTCAGGGTGGCCTTCGTCCAGCTTGTACTCTCGTCATCCAGCGGttt > 1:288025/1‑251 (MQ=255) tGTTTATCCAGTACCGCGTAATAGACTGAATTTTAACGGGAAGCGTTTGCGCGATAACGTTCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGATCGCAGCGCAGCACGCCGTTGCGGTAAAGGGTTAGAGTGGCTATACCCTCACCCAAGGGGTTT‑TCGCTGAAGCTCCGGGTGTCCTTCGTCCAGCTTGTCCTCTCGTCATCCAGCGGTTTCACTgcg > 1:32581/1‑251 (MQ=255) gTTTATCCAGTACCGCGTAATAGACTGAATTTTAACGGGAAGCGTTTGCGCGATAACGTTCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGATCGCAGCGCAGCACGCCGTTGCGGTAACGGGGTAGCGTGGCTATCACCTCACCCA‑GTGGTTTATCGCTGAAGCTCAGGATGTCCTTCGTCCAGCTTGTAATCTCGTCATCCAGCGGTTTCACTgcgc > 1:259259/1‑251 (MQ=255) gAATTTTAACGGGAAGCTGTTGCGCGATAACGTTCAGGATCGCAGCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGAAGCCCGGCAACGGTGGGAGCGCAGCTCAGCACGCTGTTGCGGTAACGGGTTAGCGTGGCTATCTCCTCACCCA‑GTGGTTTAGCGCTGAAGCTCAGGATGGCCTTCGTCCAGCTTGTACGCTCGTCATCCAGCGGTTTCTCTTCGCCAAACTCAGAGGCGCTGAACTGCa < 2:353744/249‑1 (MQ=255) aTTTTAACGGGAAGAGTTTGCGCGATAACGTTCAGGATCGCATCGGTATTTTTCAGCGGGACCGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGATCGCAGCGACGCACGCCGTTGCCGTAACGGGTTAACCTGGCAATCACCACCCCCA‑AGGGTTTCTAGCTACAGCTCCGGACGTCCTTCGTCCAGCCTGTACTTTCGTCTACCACCGGGTTCTATGCGCCACACTCacactcgctcccctcacggct > 2:117082/1‑231 (MQ=255) gtgtGCGCTATAACGTTCAGGATCGCATCGGTATTTTTCAGCGTGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGATCGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTATCACCTCACCCA‑GTGGTTTATCGCTGAAGCTCAGGATGTCCTTCGGCCAGCTTGTACTCTCGTCATCCAGCGGTTTCACTGCTCCAAACGCAGAGGCGCTGAACTGCAGGCTTTCACCAGCGTTCAc < 1:228449/248‑1 (MQ=255) acgtgcaggagcgctccGGTATTGTGCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGATTCGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTATCACCTCACCCA‑GTGGTTTATCGCTGAAGCTCAGGATGTCCTTCGTCCAGCTTGTACTCTCGTCATCCAGCGGTTTCACTGCGACAAACTCAGAGGCGCTGAACTGCAGGCTTTCACCAGCGTTCACGATGCGTTTTTg < 2:331456/235‑1 (MQ=255) aCGTTCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGATCGCAGCGCCGCACGCCGGTGCGGTAACGGGTTAGCGTGGCTATCCCCCCACCCA‑GTGGATTATCGCTGAAGCTCAGGATGTCCTTCGTCCAGCTTGTAATCTCGTCATCCAGCGGGTTCACTGCGCCAAACTCAGAGGCGCTGAACTGCAGGCTTTCACCAGCGTTCCCGATGCGtttttt > 1:177868/1‑250 (MQ=255) tCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGATCGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTATCACCTCACCCA‑GTGGTTTATCGCTGAAGCTCAGGATGTCCTTCGTCCAGCTTGTACTCTCGTCATCCAGCGGTTTCACTGCGCCAAACTCAGAGGCGCTGAACTGCAGGCTTTCACCAGCGTTCACGATGCGTTTTTgcgc < 1:360971/250‑1 (MQ=255) gTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGATCGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTATCACCTCACCCA‑GTGGTTTATCGCTGAAGCTCAGGATGTCCTTCGTCCAGCTTGTACTCTCGTCATCCAGCGGTTTCACTGCGCCAAACTCAGAGGCGCTGAACTGCAGGCTTTCACCAGCGTTCACGATGCGTTTTTTCGCGGGGGCACTGGCggg > 1:364016/1‑249 (MQ=255) tgtttccAGCGGGAACGCGCCGCTCCGTCGCAGCCCTGCAGCGGCGTGAGCGCAGTGCAGCACGCCGTTGCGGTATCGGGTTAGCGTGGCTATCCCCTCACCCA‑GTGGTTTATCGCTGAAGCTCAGGATGTCCTTCGTCCAGCGTGTACTCTCGTCATCCAGCGGTTTCGCTGCGCCAAACTCAGAGGCGCTGAACTGCAGGCTTTCCCCAGCGTTCACGATTCGTTTTTGCGCGGGGGCTCTGTCgaga < 2:327124/244‑1 (MQ=255) gCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGATCGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTATCACCTCACCCA‑GTGGTTTATCGCTGAAGCTCAGGATGTCCTTCGTCCAGCTTGTACTCTCGTCATCCAGCGGTTTCACTGCGCCAAACTCAGAGGCGCTGAACTGCAGGCTTTCACCAGCGTTCACGATGCGTTTTTGCGCGGGGGCACTGGCGAGAAGCACTTcc < 1:285730/251‑1 (MQ=255) gAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGATCGCAGCGCAGCACGCCGTTGCGGAAACGGGTTAGCGTGGCTATCACCTCACCCC‑GTGGTTTTTCGCTGAAGCTCAGGGTGTCCTTCGTCCAGCTTGTACTCTCCTCATCCCGCGGTTTCACTGCGCCAAACTCAGAGGCGCCGAACTGCAGGCTTTCCCCCGCGGTCCAGATGCGTTTTTGCGCGGGGGCCATGGGGAGCAGCACTTccccac > 2:288192/1‑247 (MQ=255) aaCGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGATCGCAGCGCAGCACGCCGTTGCGGTAAAGGGGTAGCGTGGCTATCACCTCACCCA‑GTGGTTTATCGCTGAAGCTCAGGATGTCCTTCGTACAGCTTGTAATATCGTCATCCAGCGGTTTCACTGCGCCAAACTCAGAGGCGCCGAACTGCAGGCTTTCACCAGCGTTCACGATGCGTTTTTGCGCGGGGGCACTTGCGAGAAGCACTTcccacgg > 1:248071/1‑246 (MQ=255) ggcccGCTAATGCGCAGACCGGCAACGGCGGGATCGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTATCACCTCACCCA‑GTGGTTTATCGCTGAAGCTCAGGATGTACTTCGTCCAGCTTGTACTCTCGTCATCCAGCGGTTTCACTGCGCCAAACTCAGAGGCGCTGAACTGCAGGCTTTCACCAGCGTTCACGATGCGTTTTTGCGCGGGGGCACTGGCGAGAAGCACTTCCACAGCGtg < 2:59913/249‑1 (MQ=255) tcacGCTCAGGCGCAGCCCGGCAACGGCGGGATCGCAGCGCAGCCCGCCGTTGCGGGAACGGGTTAGCGTGGCTATCACCTCACCCC‑GCGGGTTATCGCTGAAGCTCAGGATGTCCTTCGTCCCGCTTGTACTCTCGTCATCCAGAGGGTTCACTACGCCAAACTCAGAGGCACTGAACTGCAGGATTTCCACAACGTTCACCATGCCTTTTTTCCCCGGGGCACTGGCgcgacggcattagatcgggagg > 2:93285/4‑230 (MQ=255) tcacGCTCAGGCGCAGCCCGGCAACGGCGGGATCGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTATCACCTCACCCA‑GCGGTTTATCGCTGAAGCTCAGGATGTCCTTCGTCCAGCTTGTACTCTCGTCATCCAGCGGTTTCACTACGCCAAACTCAGAGGCACTGAACTGCAGGATTTCACCAGCGTTCACGATGCGTTTTTGCGCGGGGGCACTGGCGAGAAGCACtt < 1:93285/237‑1 (MQ=255) cccGCTCAGGCGCAGCCCGGCAACGGCGGGATCGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTATCACCTCACCCA‑GTGGTTTATCGCTGAAGCTCAGGATGTCCTTCGTCCAGCTTGTACTCTCGTCATCCAGCGGTTTCACTGCGCCAAACTCAGAGGCGCTGAACTGCAGGCTTTCACCAGCGTTCACGATGCGTTTTTGCGCGGGGGCACTGGCGAGAAGCACTTCCACAGCGtgct < 1:288192/251‑1 (MQ=255) gggcggGATCGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTATCACCTCACCCA‑GTGGTTTATCGCTGAAGCTCAGGATGTCCTTCGTCCAGCTTGTACTCTCGTCAGCCAGCGGTTTCACGGCGCCAAACTCAGAGGCGCTGAACTGCAGGCTTTCACCAGCGTTCACGATGCGTTTTTGCGCGGGGGCACTGGCGAGAAGCACTTCCACAGCGTGCTGCTGAACGTCAAGCTGCGTGaaa < 2:177868/250‑1 (MQ=255) gcgcagcACGCCGTTGCGGTAACGGGTTAGCGTGGCTCTCACCTCCCCCA‑GTGGTTTATCGCTGAAGCTCAGGATGTCCTTCGTCCAGCTTGTACTCTCGTCATCCAGCGGTTTCACTGCGCCAAACTCAGAGGCGCTGAACTGCAGGCTTTCACCAGCGTTCACGATGCGTTTTTGCGCGGGGGCACTGGCGCGAAGCACTTCCACAGCGAGCTGCTGAACGTCAAGCTGCGTGAAATTATCCTTCTGGc > 2:165175/1‑251 (MQ=255) aCGCCGTTGCGGTAACGGGTTAGCGTGGCTATCACCTCACCCA‑GTGGTTTATCGCTGAAGCTCAGGATGTCCTTCGTCCAGCTTGTACTCTCGTCATCCAGCGGTTTCACTGCGCCAAACTCAGAGGCGCTGAACTGCAGGCTTTCACCAGCGTTCACGATGCGTTTTTGCGCGGGGGCACTGGCGAGAAGCACTTCCACAGCGTGCTGCTGAACGTCAAGCTGCGTGAAATTATCCTGCTGTCGGACGGt > 1:1795/1‑251 (MQ=255) aaccggTTAGCGTGGCTATCTCCGCACCAA‑TTGGTTTATCGCTGAAGCTCAGGATGTCCTTCGTCCAGCTTGTACTCTCGTGATCCAGCGGTTTCACTGCGCCAAACTCAGAGGCGCTGAACTGCAGGCTTTCACCAGCGGTCACGATGCGTTTTTGCGCGGGGGCACTGGCGAGAAGCACGTCCACAGCGTGCTGCTGAACGTCAAGCTGCGTGAAATTATCCTGCGGGCGGACGGTAAATGCTGTCCCt < 2:79073/247‑1 (MQ=255) ggCTATCACCTCACCCA‑GTGGTTTATCGCTGAAGCTCAGGATGTCCTTCGTCCAGCTTGTACTCTCGTCATCCAGCGGTTTCACTGCGCCAAACTCAGAGGCGCTGAACTGCAGGCTTTCACCAGCGTTCACGATGCGTTTTTGCGCGGGGGCACTGGCGAGAAGCACTTCCACAGCGTGCTGCTGAACGTCAAGCTGCGTGAAATTATCCTGCTGGCGGACGGTAAATTCTGTCCCTAAAGCAGTGAGCt < 1:373001/251‑1 (MQ=255) caccCA‑GTGGTTTATCGCTGAAGCTCAGGATGTCCTTCGTCCAGCTTGTACTCTCGTCATCCAGCGGTTTCACTGCGCCAAACTCAGAGGCGCTGAACTGCAGGCTTTCACCAGCGTTCACTATGCGTTGTTGCGCGGGGGCACTGGCGAGAAGCACTTCCACAGCGTGCTGCTGAACGTCAAGCTGCGTGAAATTATCCTGCTGGCGGACGGTAAATTCTGTCCCTAAAGCAGTGAGCTGGCCCTGAc < 1:222958/249‑1 (MQ=255) | AAGGGTAAAAAGGACAATCGAAATAAGAATTATTTTCCTTACAGTGGTGAAATGTTTATCCAGTACCGCGTAATAGACTGAATTTTAACGGGAAGCGTTTGCGCGATAACGTTCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGATCGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTATCACCTCACCCA‑GCGGTTTATCGCTGAAGCTCAGGATGTCCTTCGTCCAGCTTGTACTCTCGTCATCCAGCGGTTTCACTGCGCCAAACTCAGAGGCGCTGAACTGCAGGCTTTCACCAGCGTTCACGATGCGTTTTTGCGCGGGGGCACTGGCGAGAAGCACTTCCACAGCGTGCTGCTGCACGTCAAGCTGCGTGAAATTATCCTGCTGGCGGACGGTAAATTCTGTCCCTAAAGCAGTGAGCTGGCCCTGAC > NC_000913/4516726‑4517200 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |