| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,463,952 | G→A | S253F (TCC→TTC) | treC ← | trehalose‑6‑phosphate hydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,463,952 | 0 | G | A | 87.9% | 75.9 / 0.5 | 33 | S253F (TCC→TTC) | treC | trehalose‑6‑phosphate hydrolase |
| Reads supporting (aligned to +/- strand): ref base G (2/2); new base A (14/15); total (16/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 | |||||||||||
ACCAAAGCGAGAAACAATGCGCGGCTGATCGTGGTTACACCAGAACAAGGCATTCCATGCTACGTTGTGCATTCCTTGTTGCCAGTGGCGGAACAATGTTTTCAACGCCACAAAGTCAGGTTTAGCCAGCGTCCATTTTTCACCACCGGGATAATCGACCTTCAGGTGATGAAAATTAAAGGTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGGACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGTGGCCCGTCGGTGTAGAAGCGACGCCCGTCGCCGTCCAGGTCTTCAGGGAAACGCGGGTCTTTGGAGATCAGATTCACCACATCCAGGCGCAACCCGTCGACCCCACGATCGGCCCAGAACTCACAGACTTTTTTCAGCTCTGC > NC_000913/4463708‑4464172 | aCCAAAGCGAGAAACAATGCGCGGCTGATCGTTGTTACACCAGAACAAGGCATTCCATGCTACGTTGTGCATTCCTTGTTGCCAGTGGCGGAACAATGTTTTCAACGCCACAAAGTCAGGTTTAGCCAGCGTCCATTTTTCACCACCGGGATAATCGACCTTCAGGTGATGAAAATTAAAGGTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTAAAGGCTGGTGGAGAACAttt < 1:306681/251‑1 (MQ=255) ggTTACACCAGAACAAGGCATTCCATGCTACGTTGTGCATTCCTTGTTGCCAGTGGCGGAAAAATGTTTTCAAAGCCACAAAGTCAGGGTTAGCCAGCGTCCCTTTTTCACCACCGGGAAAAACGACCTTCAGGTGATGAAAATTAAAGGTCATCGACAATTCACCGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAac > 1:183903/1‑251 (MQ=255) cacCAGAACAAGGCATTCCATGCTACGTTGTGCATTCCTTGTTGCCAGTGGCGGAACAATGTTTTCAACGCCACAAAGTCATGTTTAGCCAGCGTCCATTTTTCACCACCGGGATAATCGACCTTCAGGTGATGAAAATTAAAGGTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGGACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATc < 1:156448/251‑1 (MQ=255) aaCAAGGCATTCCATGCTACGTTGTGCATTCCTTGTTGCCAGTGGCGGAACAATGTTTTCAACGCCACAAAGTCAGGTTTAGCCAGCGTCCATTTTTCACCACCGGGATAATCGACCTTCAGGTGATGAAAATTAAAGGTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCcgcgatgtgtttacgccacgcgggt < 1:326455/251‑22 (MQ=255) cAAGGCATTCCATGCTACGTTGTGCATTCCTTGTTGCCAGTGGCGGAACAATGTTTTCAACCCCACAAAGTCAGGTTTAGCCAGCGTCCATTTTTCACCACCGGGATAATCGACCTTCAGGTGATGAAAATTAAAGGTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCCGCGTGGCGGAAACACATCGCGGTTcc > 1:166071/1‑250 (MQ=255) aaGGCATTCCATGCTACGTTATGCATTCCTTGTTGCCAGTGGCGGAACAATGTTTTCAACGCCACAAAGTCAGGATTAGCCAGCGTCCATTTTTCACCACCGGGCTAATCGACCTTCAGGTGATGAAAATTAAAGGTCAACGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTTGTGGAGGACATTTCACCTACGGTCCTTAACCCCCGTGGCGTAAACACATCCCGGTTCAt > 1:60589/1‑251 (MQ=255) aGGCATTCCATGCTTCGTTGTGCATTCCTTGTTGCCAGTGGCGGAACAATGTTTTCAACGCCACAAAGTCAGGTTTAGCCAGCGTCCATTTTTCACCACCGGGATAATCGACCTTCAGGTGATGAAAATTAAAGGTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCCTCGTGGCGTAAACACATCGCGGTTCAtc < 1:232199/251‑1 (MQ=255) aTTCCATGCTACGTTGTGCATTCCTTGTTGCCAGTGGCGGAACAATGTTTTCAACGCCACAAAGACAGGTTTAGCCAGCGTCCATTTTTCACCACCGGGATAATCGACCTTCAGGTGATGAAAATTAAAGGTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTAACCTACGGTCATTAACCCGCGGGGCGTAAACACATCGCGGTTCATCTCgg > 1:381477/1‑250 (MQ=255) tCCATGCTACGTTGTGCATTCCTTGTTGCCAGTGGCGGAACAATGTTTTCAACGCCACAAAGTCAGGTTTAGCCAGCGTCCATTTTTCACCACCGGGATAATCGACCTTCAGGTGATGAAAATTAAAGGTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTg < 1:196554/250‑1 (MQ=255) ccATGCTACGTTGTGCATTCCTTGTTGCCAGTGGCGGAACAATGTTTTCAACGCCACAAAGTCAGGTTTAGCCAGCGTCCATTTTTCACCACCGGGATAATCGACCTTCAGGTGATGAAAATTAAAGGTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTGCa < 1:352494/251‑1 (MQ=255) ttgCCAGTGGCGGAACAATGTTTTCAACCCCACAAAATCAGGGTTAGCCAGCGTCCATTTTTCACCACCCGGAAAATCGACCTTCAGGGGATGACAATTAAAGGTCATCGACAATTCCCTGCCCGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCAGGTGGAGGACATTTCACCTACGGTCCTTAACCCGCCTGGCGTAAACACATCCCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGTGGCCCgc > 1:68489/1‑250 (MQ=255) gCCAGTGGCGGAACAATGTTTTCAACGCCACAAAGTCAGGTTTAGCCAGCGTCCATTTTTCACCACCGGGATAATCGACCTTCAGGTGATGAAAATTAAAGGTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGTGGCCCGTCg > 1:110075/1‑251 (MQ=255) ggAACAATGTTTTCAACGCCACAAAGTGAGATTTAGCCAGCGTCCATTTTTCACCACCGGGATAATCGACCTTCAGGTGATGAAAATTAAAGGTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTAGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGTGGCCCGTCGGGGTAGa > 1:84766/1‑249 (MQ=255) aCGCCACAAAGTCAGGTTTAGCCAGCGTCCATTTTTCACCACCGGGATAATCGACCTTCAGGTGATGAAAATTAAAGGTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGTGGCCCGTCGGTGTAGAAGCGACGCCCGTCGCCg < 1:113254/251‑1 (MQ=255) caacaAATTCACGTTTAGCCAGCGTCCATGTTGCACCACCGGGATAATCGACCGTTAGGTGATGAAAATTAAAGGTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTTGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTACCCCGCGTGGCGTAAACACATCGCGGTTCAGCTCGTGCAAAAACTCGTGTGCTCGTGGCCCGTAGGTGTATAAGCGACGCCCGTCGCCGTcc < 2:127870/249‑1 (MQ=255) aaaGTTAGGTTTAGCCAGCGTCAATTTTTCACCACCGGGATAATCGACATTCAGGTGATGAATATTAAAGGTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATAGCTGGCAATGCTCCAGGCTGGTGGCGAACATTTCCACTACGGTCTTTAACCCGCGTGTCCTAAACACATCGCTGTTCATCTCGTGCATAAACTAGTGTGCTCTTAGCCCGTCGGTCGAGTAGCGACgtcatttcacggcgacgt > 2:101191/1‑234 (MQ=255) cAGCGTCCATTTTTCACCACCGGGATAATCGACCTTCAGGTGATGAAAATTAAAGGTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGTGGCCCGTCGGTGTAGAAGCGACGCCCGTCGCCGTCCAGGTCTTCAGGGAAAcgcg > 1:206143/1‑251 (MQ=255) cGTCCATTTTTCACCACCGGGATAATCGACCTTCAGGTGATGAAAATTAAAGGTCATCGCCAATTCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGTGGCCCGTCGGTGTAGAAGCGACGCCCGTCGCCGTACAGGTCTTCAGGGAAACGAGGGt > 1:372480/1‑251 (MQ=255) gatgaAAATTAAAGGTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGTGGCCCGTCGGTGTAGAAGCGACGCCCGTCGCCGTCCAGGTCTTCAGGGAAACGCGGGTCTTTGGAGATCAGATTCACCACATCCAGGCGCAAccc < 2:110075/250‑1 (MQ=255) gatgaAAATTAAAGGTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGTGGCCCGTCGGTGTAGAAGCGACGCCCGTCGCCGTCCAGGTCTTCAGGGAAACGCGGGTCTTTGGAGATCAGATTCACCACATCCAGGCGCAACCCg > 1:239131/1‑251 (MQ=255) aatgaaaGGTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGTGGCCCGTCGGTGTAGAAGCGACGCCCGTCGCCGTCCAGGTCTTCAGGGAAACGCGGGTCTTTGGAGATCAGATTCACCACATCCAGGCGCAACCCGTCGAcc < 1:245284/247‑1 (MQ=255) aaTTAAAGGTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGTGGCCCGTCGGTGTAGAAGCGACGCCCGTCGCCGTCCAGGTCTTCAGGGAAACGCGGGTCTTTGGAGATCAGATTCACCACATCCAGGCGCAACCCGTCGAcc < 1:336863/251‑1 (MQ=255) ggTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGTGGCCCGTCGGTGTAGAAGCGACGCCCGTCGCCGTCCAGGTCTTCAGGGAAACGCGGGTCTTTGGAGATCAGATTCACCACATCCAGGCGCAACCCGTCGACCCCACGAt > 1:191738/1‑251 (MQ=255) gACAATGCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGTCTGGTGGAGAACAGTTCACCTACGGTCATTAACCCGCGTGGCGTAGACACATCGCGGTTCATCTCGTGCAAAAACTCGTTTGCTCGTGGCCCGTCGGTGTAGATGCGACGCCCGTCGCCGTCCAGGTCTTCAGTGAAACGGGGGTCTTTGGAGATCAGATTCACCACATCCAGGCGCAACCCGTCCACCTCACGAGCGGCCCa < 2:166071/251‑1 (MQ=255) ttCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGTGGCCCGTCGGTGTAGAAGCGACGCCCGTCGCCGTCCAGGTCTTCAGGGAAACGCGGGTCTTTGGAGATCAGATTCACCACATCCAGGCGCAACCCGTCGACCCCACGATCGGCCCAGAACt > 1:278463/1‑251 (MQ=255) cACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGTGGCCCGTCGGTGTAGAAGCGACGCCCGTCGCCGTCCAGGTCTTCAGGGAAACGCGGGTCTTTGGAGATCAGATTCACCACATCCAGGCGCAACCCGTCGACACCACGATCGGCCCAGAACTc > 1:20798/1‑250 (MQ=255) gCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTTGAGAACATTTCTCCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTGCAAAATCTCGTGGGCACGTGTCCCGTCGGTTTAGAATCGATGCCCGTCGCCGTCCAg < 2:280333/162‑1 (MQ=255) gCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGTGGCCCGTCGGTGTAGAAGCGACGCCCGTCGCCGTCCAg > 1:280333/1‑162 (MQ=255) ccTGTCAGAGCGTCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGGACATTTCAACTACGGTCATTAACCCGGGGGGCGTAAACACATCGCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGTGGCCCGTCGGTGTAGAAGCGACGCCCGTCGCCGTCCAGGTCTTCAGGGAAACGCGGGTCTTTGGAGATCAGATTCACCACATCCAGGCGCAACCCGTCGACCCCACGATCGGCCCAGAACTCAAAGAc < 2:60589/251‑1 (MQ=255) cAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGTGGCCCGTCGGTGTAGAAGCGACGCCCGTCGCCGTCCAGGTCTTCAGGGAAACGCGGGTCTTTGGAGATCAGATTCACCACATCCAGGCGCAACCCGTCGACCCCACGATCGGCCCAGAACTCACAGACtttt < 1:36826/250‑1 (MQ=255) cgTATCGCTGGCAATGCTCAAGGCTGGTGGAGAACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGTGGCCCGTCGGTGTAGAAGCGACGCCCGTCGCCGTCCAGGTCTTCAGGGAAACGCGGGTCTTTGGAGATCAGATTCACCACATCCAGGCGCAACCCGTCGACCCCACGATCGGCCCAGAACTCACAGACTTTTTTCAGctct < 1:155908/251‑1 (MQ=255) cgTAGCGCTGGCGATGCTCAAGGCTGGTGGAGAACATTGCGCCTACGGTCATTAACCCGCGTGGCGTAAACTCATCGCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGTGGCCCGTCGGTGTAGAAGCGACGCCCGTCGCCGTCCAGGTCCTCAGGGAAACGCGGGTCTTTGTAGATCAGATTCACCACATCCAGGCGCATCCCGTCGACCCCACGATCGGCTCAGAACTCACAGACTTTTTTCAGctct < 2:278463/251‑1 (MQ=255) tATCGCTGGCAATGCTCAAGGCTGGAGGAGAACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGCGGCCCGTCGGGGCAGAAGCGACGCCCGTCGCCGTCCAGGCCTTCAGGGAAACGCGGGTCTTTGGAGCTCAGATTCACCACATCCAGGCGCAACCCGTCGACCCCACGATCGGCCCAGAATACACAGCCTTTTTTCAGCTCTgc > 1:39130/1‑251 (MQ=255) | ACCAAAGCGAGAAACAATGCGCGGCTGATCGTGGTTACACCAGAACAAGGCATTCCATGCTACGTTGTGCATTCCTTGTTGCCAGTGGCGGAACAATGTTTTCAACGCCACAAAGTCAGGTTTAGCCAGCGTCCATTTTTCACCACCGGGATAATCGACCTTCAGGTGATGAAAATTAAAGGTCATCGACAATTCACTGCCTGTCAGAGCCGCGTATCGCTGGCAATGCTCAAGGCTGGTGGAGGACATTTCACCTACGGTCATTAACCCGCGTGGCGTAAACACATCGCGGTTCATCTCGTGCAAAAACTCGTGTGCTCGTGGCCCGTCGGTGTAGAAGCGACGCCCGTCGCCGTCCAGGTCTTCAGGGAAACGCGGGTCTTTGGAGATCAGATTCACCACATCCAGGCGCAACCCGTCGACCCCACGATCGGCCCAGAACTCACAGACTTTTTTCAGCTCTGC > NC_000913/4463708‑4464172 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |