| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,445,924 | C→T | Q605* (CAG→TAG) | tamB → | translocation and assembly module subunit TamB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,445,924 | 0 | C | T | 87.9% | 66.4 / 4.2 | 34 | Q605* (CAG→TAG) | tamB | translocation and assembly module subunit TamB |
| Reads supporting (aligned to +/- strand): ref base C (2/2); new base T (16/13); total (19/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.08e-01 | |||||||||||
AAACAGTGCCGAAGTGAAAGGCGAGCTGGGGGTAAAAGATCTCAATCTTGATGCCACCATCAACGCGCCGGGGCTGGATAACGCGCTGCCGGGGCTTGGCGGT‑ACAGCGAAAGGGCTGGTGAAAGTACGCGGCACGGTGGAAGCGCCACAACTACTGGCAGATATCACCGCGCGCGGCCTGCGCTGGCAGGAACTTTCCGTG‑GCGCAGGTTCGCGTGGAAGGCGATATCAAATCCACCGAT‑CAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTCGTCACCCTGAATGCCAAAGGCAGCGAAAAGCAGCACGAGCTACAGTTGCGGATTCAGGGGGAGCCTGTCTCCGGGCAGCTTAATCTGGCAGGAAGTTTTGATCGCAAAGAAGAACGCTGGAAGGGAACTCTTAGCAATACCCGCTTCCAGACGCCGGTTGGCCCGTGGTCGCTGACC > NC_000913/4445683‑4446166 | aaacggtgactaaGTGAAATGCTAGCTGGGGGTAAAAGATCTCAATCTTGATGCCACCATCAACGCGCCGGGGCGGGATAACGCGCTGCCGGGGCTTGGCGGT‑ACAGCGAAATGGCTGGTGAAAGTACGCGGCCCGTTGGAAGCGCCACAACTACTGGCAGATATCACCGCGCTCGGCCTGCGCTGGCAGGAACTTTCCGTG‑GCGCAGGTGCTCGTGGAAGGCGATATCAAATACACCTAT‑TAGATCgtcg < 2:308097/240‑4 (MQ=255) aaCAGTGCCGAAGTGAAAGGCGAGCTGGGGGTAAAAGATCTCAATCTTGATGCCACCATCAACGCGCCGGGGCTGGATAACGCGCTGCCGGGGCTTGGCGGT‑ACAGCGAAAGGGCTGGTGAAAGTACGCGGCACGGTGGAAGCGCCCCAACTACTGGCAGATATCACCGCGCGCGGCCTGCGCTGGCAGGAACTTTCCGTG‑GCGCCGGTTCGCGTGGAAGGCGATATCAAATCCCCCGAT‑TAGATCGACgg > 1:239001/1‑251 (MQ=255) aGTGAAAGGCGAGCTGGGGGTAAAAGATCTCAATCTTGATGCCACCATCAACGCGCCGGGGCTGGATAACGCGCTGCCGGGGCTTGGCGGT‑ACAGCGAAAGGGCTGGTGAAAGTACGCGGCACGGTGGAAGCGCCACAACTACTGGCAGATATCACCGCGCGCGGCCTGCGCTGGCAGGAACTTTCCGTG‑GCGCAGGTTCGCGTGGAAGGCGATATCAAATCCACCGAT‑TAGATCGCCGGGAAACTCGACg > 1:75307/1‑251 (MQ=255) gAAAGGCGAGCTGGGGGTAAAAGATCTCAATCTTGATGCCACCATCAACGCGCCGGGGCTGGATAACGCGCTGCCGGGGCTTGGCGGT‑ACAGCGAAAGGGCTGGTGAAAGTACGCGGCACGGTGGAAGCGCCACAACTACTGGCAGATATCACCGCGCGCGGCCTGCGCTGGCAGGAACTTTCCGTG‑GCGCAGGTTCGCGTGGAAGGCGATATCCAATCCACCGAT‑TAGATCGCCGGGAAACTCGACGTAc > 1:371675/1‑251 (MQ=255) aGGCGAGCTGGGGGTAAAAGATCTCAATCTTGATGCCACCATCAACGCGCCGGGGCTGGATAACGCGCTGCCGGGGCTTGGCGGT‑ACAGCGAAAGGGCTGGTGAAAGTACGCGGCACGGTGGAAGCGCCACAACTACTGGCAGATATCACCGCGCGCGGCCTGCGCTGGCAGGAACTTTCCGTG‑GCGCAGGTTCGCGTGGAAGGCGATATCAAATCCACCGAT‑TAGATCGCCGGGAAACTCGACGTAcgcg > 1:311037/1‑251 (MQ=255) caaaGATCTCAATCTTGATGCCACCATCAAAGCGCCGGGGCTGGATAACGCGCTGCCGGGGCTTGGCGAT‑ACAGCGAACGGGCTGGTGAAAGTCCGCGGAACGGTTGAAGCGCCACAACTACTGGCAAATATCCCCGACCGCGGCCTGCGCTGGCAGGAACTTTCC‑TGTGCGCAGGTTTGCGAGGAAGGCGATATCAAATACAACGATTAAGA‑CGCCGGGAAACTAGCCGTACTCGtttggctactttcat > 2:169328/2‑238 (MQ=255) tctcAATCTTGATGCCACCATCAACGCGCCGGGGCTGGATAACGCGCTGCCGGGGCTTGGCGGT‑ACAGCGAAAGGGCTGGTGAAAGTACGCGGCACGGTGGAAGCGCCACAACTACTGGCAGATATCACCGCGCGCGGCCTGCGCTGGCAGGAACTTTCCGTG‑GCGCAGGTTCGCGTGGAAGGCGATATCAAATCCACCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCgg > 1:267219/1‑251 (MQ=255) ccaTCAACGCGCCGGGGCTGGATAACGCGCTGCCGGGGCTTGGCGGT‑ACAGCGAAAGGGCTGGTGAAAGTACGCGGCACGGTGGAAGCGCCACAACTACTGGCAGATATCACCGCGCGCGGCCTGCGCTGGCAGGAACTTTCCGTG‑GCGCAGGTTCGCGTGGAAGGCGATATCAAATCCACCGAT‑CAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTc < 1:326814/251‑1 (MQ=255) acactccccGGGGCGGTATAACGCGCTTCCGGGGCTTGGCGGT‑ACAGCGTAAGGGCGGGTGAAAGTACGCGGCACGGTGGAAGCGCCACAACTACTGGCAGATATCGCCGCGCACGGCCGGCGCTGGCAGGAACTTTCCGTG‑GCGGAGGTTCGCGTGGAAGGCGATATCAAATCCACCGAT‑TAGATCTCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAAGATCAACCTcat < 2:318106/242‑3 (MQ=255) ggggCTTGATAACGCGCTGCCTGGGCTAGGCGGTTCCAG‑GAAAGGGTGGGTGAACGTACGCGGCACTGTGGAAGCGCTACATATACTTGCATATTTCACCGCGCGCGGCCTGCGCTGGCAGGAACTTTCCGTG‑GCGCAGGTTCGCGTGGAAGGCGATATCAATTCCTCCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTCGTCACCTTGaa < 2:342433/249‑1 (MQ=255) gCTGGATAACGCGCTGCCGGGGCTTGGCGGT‑ACAGCGAAAGGGCTGGTGAAAGTACGCGGCACGGTGGAAGCGCCACAACTACTGGCAGATATCACCGCGCGCGGCCTGCGCTGGCAGGAACTTTCCGTG‑GCGCAGGTTCGCGTGGAAGGCGATATCAAATCCACCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTCGTCACCCTGAATGcc > 1:311781/1‑250 (MQ=255) ggggCTTGGCGGT‑ACAGCGAAAGGGCTGGTGAAAGTACGCGGCACGGTGGAAGCGCCACAACTACTGGCAGATATCACCGCGCGCGGCCTGCGCTGGCAGGAACTTTCCGTG‑GCGCAGGTTCGCGTGGAAGGCGATATCAAATCCACCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTCGTCACCCTGAATGCCAAAGGCAGCGAAAagcagc > 1:205438/1‑251 (MQ=255) gCTTGGCGGT‑ACAGCGAAAGGGCTGGTGAAAGTCCGCGGCACGGTGGAAGCGCCACAACTACTGGCAGATATCACCGCGCGCGGCCTGCGCTGGCAGGAACTTTCCGTG‑GCGCAGGTTCGCGTGGAAGGCGATATCAAATCCACCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTCGTCACCCTGAATGCCAAAGGCAGCGAAAAGCAGCACg < 2:311037/251‑1 (MQ=255) cTTGGCGGT‑ACAGCGAAAGGGCTGGTGAAAGTACGCGGCACGGTGGAAGCGCCACAACTACTGGCAGATATCACCGCGCGCGGCCTGCGCTGGCAGGAACTTTCCGTG‑GCGCAGGTTCGCGTGGAAGGCGATATCAAATCCACCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATAACAACCTCCTCACCCTACATGCCAAAGGCAGCGAAAAGCAACACg > 2:10712/1‑250 (MQ=255) aaGTACGCGGCACGGTGGAAGCGCCACAACTACTGGCAGATATCACCGCGCGCGGCCTGCGCTGGCAGGAACTTTCCGTG‑GCGCAGGTTCGCGTGGAAGGCGATATCAAATCCACCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTCGTCACCCTGAATGCCAAAGGCAGCGAAAAGCAGCACGGGATACAGTTGCGGATTCAGGGGGAgact > 1:269205/1‑248 (MQ=255) cggggCACGGGGGAAGCGCCACAACTACTGGCAGATATCTCCGCGCGCGGCCTGCGCTGGCAGGAACTTTCCGTG‑GCGCAGGTTCGCGTGGAAGGGGATATCCAATCCACCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTCGTCACCCTGAATGCCAAAGGCAGCGAAAAGCAGCACGAGCTACAGTTGCGGATTCAGGGGGAGCCTGtctc < 1:70565/248‑1 (MQ=255) ggCACGGTGGAAACGCAACAAATACTGGAAGATATCACCGCGCGCGGCCTGCGCTGGCAGGAACGTTCCGGG‑GCGCAGGTTCGCGTTGAAGGCGATATCAAATCCACCGAT‑TCGCTCGCCGGGAAACTCAACGTACGCGTTGATCAAATTTCGCAGCCGGATGAAAATATCAACCTCGTCACCCTGAATGCCCAAAGCAGCGAAACGACGCACGACCTACAGTCGCGGATTAGGGGGGAGccgttatccgg > 2:262151/1‑242 (MQ=255) gCACGGTGGAAGCGCCACAACTACTGGCAGATATCACCGCGCGCTGCCTGCGCTGGCAGGAACTTTCCGTG‑GCGCAGGTTCGCGTGGAATGCGATATCAAATCCACCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCATCCTCGTCACCCTGAATGCCAAAGGCAGCGAAAAGCAGCACGAGCTACAGTTGCGGATTCAGGGGGAGCCTGTCTCCggg < 1:48014/251‑1 (MQ=255) gcgcCACAACTACTGGCAGATATCACCGCGCGCGGCCTGCGCTGGCAGGAACTTTCCGTG‑GCGCAGGTTCGCGTGGAAGGCGATATCAAATCCACCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTCGTCACCCTGAATGCCAAAGGCAGCGAAAAGCAGCACGAGCTACAGTTGCGGATTCAGGGGGAGCCTGTCTCCGGGCAGCTTAATCt < 1:119124/251‑1 (MQ=255) ggcaggttagtgcgtgcggggCCTGCGCGGGCATGAACTTGTCGTG‑GCGCATGTTCGCGTGGAAGTTGATATCAAAACTACCTAT‑TAGAGCGCTGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGGAAATATCAATCTCGTCACTCTGAATGCCAAAGTCAGCGAAAAGCAGCACGTTCTACAGTTGCTGATTCAGGGGGAGTCTGTCTCCGGGCAGCTTAATCTTGCAGGAAGtttt < 2:185060/231‑1 (MQ=255) aGATATCACCGCGCGCGGCCTGCGCTGGCAGGAACTTTCCGAG‑GCGCAGGTTCGCGTGGAAGGCGATATCAAATCCACCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACATCGTCAACCTGAATGCCAAAGGCAGCGAAAAGCAGCACGAGCTACAGTTGCGGATTCAGGGGGAGCCTGTCTCCGGGCAGCTTCATCTGGCATGAAGTTTTGATc > 1:265061/1‑251 (MQ=255) gATATCACCGCGCGCGGCCAGCGCTGGCAGGAAATTTGCGAG‑GAACAGGTTCGCGTGGGAGACGCTATAAACTCCCCCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGACGGATGTAAAAGTCAACCTCGTCACCCTGAATGCAAAAGGCAGCGAAAAGCAGCACGCACTACAGTTACGGATTCAGGGGGAGGCTGTCTCGGGGCAGATTacgaaggcaggaagtgttgaacg > 2:372590/1‑229 (MQ=255) ccggcgcgGCCTGCGCTGGCAGGAACTTGCAGTG‑GCGCAGGTTCGCGGGGAAGGCGATATAAAATCCACCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTCGTCACCCTGAATGCCAAAGGCAGCGAAAAGCAGCACGAGCTACAGTTGCGGATTCAGGGGGAGCCTGTCTCCGGGCAGCTTAATCTGGCAGGAAGTTTTGATCGCAaagaag < 2:205438/248‑1 (MQ=255) cgcTGGCAGGAACTTTCCGTG‑TCGCAGGTTCGCGTGGAAGGCGATATCAAATCCACCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTCGTCACCCTGAATGCCAAAGGCAGCGAAAAGCAGCACGAGCTACAGTTGCGGATTCAGGGGGAGCCTGTCTCCGGGCAGCTTAATCTGGCAGGAAGTTTTGATCGCAAAGAAGAACGCTGGAAggg < 1:886/251‑1 (MQ=255) tGGCAGGAACTTTCCGTG‑GCGCAGGTTCGCGTGGAAGGCGATATCAAATCCACCGAT‑CAGATCGCCGGGAAACTCGACGTACGCATTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTCGTCACCCTGAATGCCAAAGGCAGCGAAAAGCAGCACGAGCTACAGTTGCGGATTCAGGGGGAGCCTGTCTCCGGGCAGCTTAATCTGGCAGGAAGTTTTGATCGCAAAGAAGAACGCTGGAAGGGAAc > 1:110681/1‑251 (MQ=255) gAACTTTCCGTG‑GCGCAGGTTCGCGTGGAAGGCGATATCAAATCCACCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTCGTCACCCTGAATGCCAAAGGCAGCGAAAagcagc > 1:102450/1‑151 (MQ=255) gAACTTTCCGTG‑GCGCAGGTTCGCGTGGAAGGCGATAGCAAATCCACCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATAGCAACCTCGTCACCCTGAATGCCAAAGGCAGCGAAAagcagc < 2:102450/151‑1 (MQ=255) g‑gCGCAGGTTCGCGTGGAAGGCGATATCAAATCCACCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTCGTCACCCTGAATGCCAAAGGCAGCGAAAAGCAGCACGAGCTACAGTTGCGGATTCAGGGGGAGCCTGTCTCCGGGCAGCTTAATCTGGCAGGAAGTTTTGATCGCAAAGAAGAACGCTGGAAGGGAACTCTTAGCAATACCCGCt < 1:291092/251‑1 (MQ=255) ggAAGGCGATATCAAATCCACCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTCGTCACCCTGAATGCCAAAGGCAGCGAAAAGCAGCACGAGCTACAGTTGCGGATTCAGGGGGAGCCTGTCTCCGGGCAGCTTAATCTGGCAGGAAGTTTTGATCGCAAAGAAGAACGCTGGAAGGGAACTCTTAGCAATACCCGCTTCCAGACGCCGGTTg > 1:184125/1‑251 (MQ=255) gCGATATCAAATCCACCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTCGTCACCCTGAATGCCAAAGGCAGCGAAAAGCAGCACGAGCTACAGTTGCGGATTCAGGGGGAGCCTGTCTCCGGGCAGCTTAATCTGGCAGGAAGTTTTGATCGCAAAGAAGAACGCTGGAAGGGAACTCTTAGCAATACCCGCTTCCAGACGCCGGTTGGCCCg < 1:10712/251‑1 (MQ=255) aaTCCACCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTCGTCACCCTGAATGCCAAAGGCAGCGAAAAGCAGCACGAGCTACAGTTGCGGATTCAGGGGGAGCCTGTCTCCGGGCAGCTTAATCTGGCAGGAAGTTTTGATCGCAAAGAAGAACGCTGGAAGGGAACTCTTAGCAATACCCGCTTCCAGACGCCGGTTGGCCCGTGGTCGCTg > 1:184599/1‑251 (MQ=255) ccACCGAT‑TAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTCGTCACCCTGAATGCCAAAGGCAGCGAAAAGCAGCACGAGCTACAGTTGCGGATTCAGGGGGAGCCTGTCTCCGGGCAGCTTAATCTGGCAGGAAGTTTTGATCGCAAAGAAGAACGCTGGAAGGGAACTCTTAGCAATACCCGCTTCCAGACGCCGGTTGGCCCGTGGTCGCTGAcc > 1:53743/1‑251 (MQ=255) aT‑CAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTCGTCACCCTGAATGCCAAAGGCGGCGAAAAGCAGCACGAGCTACAGTTGCGGATTCAGGGGGAGCCTGTCTCCGGGCAGCTTAATCTGGCAGGAAGTTTTGATCGCAAAGAAGAACGCTGGAAGGGAACTCTTAGCAATACCCGCTTCCAGACGCCGGTTgg < 1:38629/229‑1 (MQ=255) aT‑CAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTCGTCACCCTGAATGCCAAAGGCGGCGAAAAGCAGCACGAGCTACAGTTGCGGATTCAGGGGGAGCCTGTCTCCGGGCAGCTTAATCTGGCAGGAAGTTTTGATCGCAAAGAAGAACGCTGGAAGGGAACTCTTAGCAATACCCGCTTCCAGACGCCGGTTgg > 2:38629/1‑229 (MQ=255) | AAACAGTGCCGAAGTGAAAGGCGAGCTGGGGGTAAAAGATCTCAATCTTGATGCCACCATCAACGCGCCGGGGCTGGATAACGCGCTGCCGGGGCTTGGCGGT‑ACAGCGAAAGGGCTGGTGAAAGTACGCGGCACGGTGGAAGCGCCACAACTACTGGCAGATATCACCGCGCGCGGCCTGCGCTGGCAGGAACTTTCCGTG‑GCGCAGGTTCGCGTGGAAGGCGATATCAAATCCACCGAT‑CAGATCGCCGGGAAACTCGACGTACGCGTTGAGCAAATTTCGCAGCCGGATGTAAATATCAACCTCGTCACCCTGAATGCCAAAGGCAGCGAAAAGCAGCACGAGCTACAGTTGCGGATTCAGGGGGAGCCTGTCTCCGGGCAGCTTAATCTGGCAGGAAGTTTTGATCGCAAAGAAGAACGCTGGAAGGGAACTCTTAGCAATACCCGCTTCCAGACGCCGGTTGGCCCGTGGTCGCTGACC > NC_000913/4445683‑4446166 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |