| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,414,192 | G→A | intergenic (+1/‑83) | yjfC → / → aidB | putative acid‑‑amine ligase YjfC/putative acyl‑CoA dehydrogenase AidB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,414,192 | 0 | G | A | 97.3% | 107.0 / ‑4.2 | 37 | intergenic (+1/‑83) | yjfC/aidB | putative acid‑‑amine ligase YjfC/putative acyl‑CoA dehydrogenase AidB |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (19/17); total (19/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.83e-01 | |||||||||||
GCGCGAAGGCGGCAACGTCACCATTTTTGACGGCAAGAATAACGTTGTTGACCACGCTGATGGTGATTACGCCGATGAACCGATGATCTACCAGGCGTTTCAACCTCTGCCGCGGTTTGGCGATAGCTACACACTCATCGGTAGCTGGATTGTCGATGATGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAACGCGTGAAGGTGCTGGCTGGGATAGCGATTTTCTAGCCAGTATTGGTCAGCAGTTAGGAACGG > NC_000913/4413945‑4414431 | ccgcgAAGGCGGCAACGGCACCAGTTTTGACGGCAAGAATAACGGTGTTGACCACGCTGATGGTGATTACGCCGATGAGCCGATGATCTACCAGGCGTTTCAACCTCTGCCGCGGTTTGGCGATAGCTACACACTCATCGGTAGCTGGATTGTCGATGATGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACATCTCACGTTTCGTGCCGCATTACATTGCTGGATAAAAAt < 1:114161/250‑1 (MQ=255) aGGCGGCAACGTCACCATTTTTGACGGCAAGAATAACGTTGTTGAACATGCTGATGGTGATTACGCCGATGAACCGATGATCTACCAGGCGTTTCAACCTCTGCCGCGTTTTGGCGATAGCTACACACTCATCGGTAGCTGGATTGTCGATGATGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTa < 1:79052/251‑1 (MQ=255) ggcAACGTCACCATTTTTGACGGCAAGAATAACGTTGTTGACCACGCTGATGGTGATTACGCCGATGAACCGATGATCTACCAGGCGTTTCAACCTCTGCCGCGGTTTGGCGATAGCTACACACTCATCGGTAGCTGGATTGTCGATGATGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCa > 1:20550/1‑250 (MQ=255) caaagTCACCATTTTTGACGGCAAGAATAACGTTGTTGACCACGCTGATGGTGATTACGCCGATGAACCGATGATCTACCAGGCGTTTCAACCTCTGCCGCGGTTTGGCGATAGCTACACACGCATCGGTAGCTGGATTGTCGATGATGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCTTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAAtc < 1:325626/247‑1 (MQ=255) cATTTTTGACGGCAAGAATAACGTTGTTGACCACGCTGATGGTGATTACGCCGATGAACCGATGATCTACCAGGCGTTTCAACCTCTGCCGCGGTTTGGCGATAGCTACACACTCATCGGTAGCTGGATTGTCGATGATGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGt < 1:135807/251‑1 (MQ=255) tttttGACGGCAAGAATAACGTTGTTGACAACGCTGATGGTGATTACGCCGATGAACCGATGATCTACCAGACGTTTCAACCTCAGCAGCGGTTTTGCGATCGCTACACAATCATCGGTAGCTGGATTGTCGATGATGAAGCGTACGGAATGGGAGTCCGAGAAGCTAACACCCTGATCACACAGGAATCCTAACGTTTCGTTCGCCATTACATTGCTGGATAAAATTGTTTTAGCactatcattatgac > 2:14271/1‑237 (MQ=255) cGGCAAGAATAACGTTGTTGACCACGCTGATGGTGATTACGCCGATGAACCGATGATCTACCAGGCGTTTCAACCTCTGCCGCGGTTTGGCGATAGCTACACACTCATCGGTAGCTGGATTGTCGATGATGAAGCGTGCGGAATGGGGATCCGTGAAGATCACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCACTCTCTTTCTGTCATGAATcc > 2:9068/1‑251 (MQ=255) cGGCAAGAATAACGTTGTTGACCACGCTGATGGTGATTACGCCGATGAACCGATGATCTACCAGGCGTTTCAACCTCTGCCGCGGTTTGGCGATAGCTACACACTCATCGGTAGCTGGATTGTCGATGATGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATcc > 1:72958/1‑251 (MQ=255) aCCACGCTGATTGTGATTACGCCGATTAACCGATGATCTACCAGGCGTTTCAACCTCTGCCGCGGTTTGGCGATAGCTACACACTCATCGGTAGCTGTATTGTCGATGATGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAAt < 1:380337/251‑1 (MQ=255) ccgcgtaTGAACCGATGATCTGCCAGGCGGTTCAACCTCTGCCGCGGTTTGGCGATAGCTACACACTCATCGGTATCTTGATTGTCGATGATGAGGCGTGCGGAATGTGGATCCGCGAAGATAACTCACTGATCACCAAAGACTCCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATTAATCCAGGGCAGTGACCATACTAATGGTGACTGCCATTGATg < 2:34665/244‑1 (MQ=255) gatgatCTACCAGGCGTTTCAACCTCTGCCGCGGTTTGGCGATAGCTACACACTCATCGGTAGCTGGATTGTCGATGATGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGt > 1:33043/1‑251 (MQ=255) aCCAGGCGTTTCAACCTCTGCCGCGGTTTGGCGATAGCTACACACTCATCGGTAGCTGGATTGTCGATGATGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAAGCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGc < 1:21644/251‑1 (MQ=255) tGGCGATAGCTACACACTCATCGGTAGCTGGATTGTCGATGATGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCta < 1:148959/250‑1 (MQ=255) aGCTACACACTCATCGGTAGCTGGATTGTCGATGATGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTa < 1:88681/251‑1 (MQ=255) acacacTCATCGGTAGCTGGATTGTCGATGATGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTaaa < 1:9068/249‑1 (MQ=255) aGCTGGATTGTCGATGATGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTAAATAACAGCAACTtata < 1:175140/250‑1 (MQ=255) gatgatGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGgc > 1:229508/1‑251 (MQ=255) aGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTg > 1:353507/1‑251 (MQ=255) aGCGTGCGGAATGGAGAACCGAGAAGATAACACACTGATCACCAAAGACACCTCACGATTCGTTCCGCATTACATTGATGGATAAAACTGTTTTAGCAATCTCTTTCTGTCATAAATCCATGGAAGTGGCCATACTCATGGAGCCAGCCATTGTTGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAAGCACACC‑ATACCATTAAATAACCGCAACTTATACCTTTCTGATGgcgacatctg > 2:325703/1‑244 (MQ=255) gAATGGGGATCCGGGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGTCGCGCTCTGCGAAGc < 2:229508/249‑1 (MQ=255) ggggATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAAc > 1:317579/1‑251 (MQ=255) ggATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAAcgc < 1:266148/251‑1 (MQ=255) ccGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAACGCGTg > 1:129801/1‑250 (MQ=255) ccGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAACGCGTGa < 1:381189/251‑1 (MQ=255) tGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAACATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTAAATAACAGCAACTTATACATGTCTGATGGCGCGCTCTGCGAAGCGGTAACGCGTGAAgg > 2:336380/1‑251 (MQ=255) aTAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAACGCGTGAAGGTgctg > 1:109591/1‑251 (MQ=255) aaCACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAACGCGTGAAGGTgctggc < 1:329238/251‑1 (MQ=255) tGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAACGCGTGAAGGTGCTGGCTGGGAt > 1:300958/1‑250 (MQ=255) tCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGtttt > 1:240192/1‑156 (MQ=255) tCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTACCGCGTGAAGGTGCTGGCTGGGATAGCg > 1:346431/1‑251 (MQ=255) tCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGCGCACTGGCAAACTCACACCGtttt < 2:240192/156‑1 (MQ=255) cacCTCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGCCATGAATCCATGGCAGTCACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAACGCGTGAAGGTGCTGGCTGGGATAGCGATTTTCTAGc > 1:378533/1‑251 (MQ=255) tCACGTTTCGTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAACGCGTGAAGGTGCTGGCTGGGATAGCGATTTTCTAGCCAGt > 1:337137/1‑251 (MQ=255) gTTCCGCATTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAACGCGTGAAGGTGCTGGCTGGGATAGCGATTTTCTAGCCAGTATTGGTc > 1:341143/1‑249 (MQ=255) ccGCATTTCATTGCTGGATAAAAATGGTTTAGCAATCTCTTTCTGTCATGAAGCCATGGCAGTGACCATACTAATGTTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGGTTTTAATCA‑ACCTATTCCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAACGCGTGAAGGTGCTGGCTGGGATAGCGATTTGCTAGCCAGTATTGGTcagcag < 2:72958/251‑1 (MQ=255) aTTACATTGCTGGATAAAAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTAAATAACAGCAACTTAGACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAACGCGTGAAGGTGCTGGCTGGGATAGCGATTTTCTAGCCAGTATTGGTCATCAGTTAg < 1:50148/251‑1 (MQ=255) ttGCTGGATAAAAATGTTTTAGCAATATCTTTCTGTCATGAATCAATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAACGCGTGAAGGTGCTGGCTGGGCTAGCGATTTTCTAGCCAGTATTGGTCAGCAGTTAGGAACgg > 1:143960/1‑251 (MQ=255) | GCGCGAAGGCGGCAACGTCACCATTTTTGACGGCAAGAATAACGTTGTTGACCACGCTGATGGTGATTACGCCGATGAACCGATGATCTACCAGGCGTTTCAACCTCTGCCGCGGTTTGGCGATAGCTACACACTCATCGGTAGCTGGATTGTCGATGATGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCA‑ACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGGTAACGCGTGAAGGTGCTGGCTGGGATAGCGATTTTCTAGCCAGTATTGGTCAGCAGTTAGGAACGG > NC_000913/4413945‑4414431 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |