| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,344,935 | G→A | T208T (ACC→ACT) | yjdF ← | DUF2238 domain‑containing inner membrane protein YjdF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,344,935 | 0 | G | A | 88.0% | 54.6 / ‑2.7 | 26 | T208T (ACC→ACT) | yjdF | DUF2238 domain‑containing inner membrane protein YjdF |
| Reads supporting (aligned to +/- strand): ref base G (2/1); new base A (13/9); total (16/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCTGGATAAATATCGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCGGTTATCAAGCCAAAGCGCCGTAGCTGGCGGCAATGAAAGCGAGCGAGGAATATCACCGTCGTTAATGCGCCAAGCAGCGCGCAGAACATATCGGATTGCGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGACCAGGAACGCCACCATTTTACGTCC > NC_000913/4344709‑4345177 | gctgGATAAATATCGCAAAGTTCCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCTTGATGCGATATGTTTATCAGGCCCCGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCAGTTATCAAGCCAAAGCGCCg < 1:3119/247‑1 (MQ=255) tatCGCAAGGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCAGTTa < 2:91312/221‑1 (MQ=255) tatCGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCAGTTa > 1:91312/1‑221 (MQ=255) aaaGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCAGTTATCAAGCCAAAGCGCCGTAGCTGGCGGCAATGAAagc > 1:291537/1‑251 (MQ=255) gTTCATGCTGAGATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCAGTTATCAAGCCAAAGCGCCGTAGCTGGCGGCAATGAAAGCGAGCGAGGAATATCAct < 1:142029/250‑2 (MQ=255) aTGCTGATATTCCGGTCGGTGCAGTGAGTGATGTAAAAGCCTGACGTGGACAATAGCTAAAGATAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGAGTTGAAAATTTTGTAGACCGGATAAGGAATTCACGCCGCTTCCGGCATCATCAAAGCGAAATTTGTTATCCAATTATCAAGCCAAAGCGCCTTAGCTGGCGGCAATGAAAGCGAGCGTGGAATATCACcgacgt > 2:124700/1‑251 (MQ=255) tGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCAGTTATCAAGCCAAAGCGCCGTCGCTGGCGGCAATGAAAGCGAGCGAGGAATATCACCGTCGTTAAt > 1:371305/1‑251 (MQ=255) ggtcggtGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCGGTTATCAAGCCAAAGCGCCGTAGCTGGCGGCAATGAAAGCGAGCGAGGAATATCACCGTCGTTAATGCGCCAagc > 1:5421/1‑251 (MQ=255) gtcggtGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCAGTTATCAAGCCAAAGCGCCGTAGCTGGCGGCAATGAAAgcgagcga > 1:186569/1‑221 (MQ=255) gtgtgccttgagtgaTGGGAAAGTCTGTCGTGGCCAATATCTAACGAAAAGGGTCTGGTGTGATATGATTAATAGGCCACGTCTGAATGTAATGCTTTGTATTTGCAAATTTTGTAGACCGGATAAGGAATTAACGCCGCATACGGCACCAACAAAGCGCAAGTTGTTATCCAGTTATCAAGCCAAAGCGCTGTAGCTGGCGGCAATGAAATCGAGCGAGGAATATCCCCGTCGTTAATGCGCCAatcaga < 2:292971/243‑2 (MQ=255) gtGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTCACGAAAATGGAGTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGACTTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCAGTTATCAAGCCAAAGCACCGTAGCTGACGGCAATGAAAGCGAGAGAGGAATATCAACGTCGTTAATACGCCAAGCAgcgc > 2:323868/1‑251 (MQ=255) cGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAACTTTTGTAGACCGGATAAGGAATTCACGCCGCATCAGGCATCAACAAAGCGCAAGTTGTTATCCAGTTATCAAGCCAAAGCGCCGTAGCTGGCGGCAATGAAAGCGAGCGAGGAATATCACCGTCGTTAATGCGCCAAGCAGCGCGCAGAACATATCGGCTTGCGTGTccc > 1:167304/1‑251 (MQ=255) taTAGCTAACGAAAATAGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCGGTTATCAAGCCAAAGCGCCGTAGATGGCGGAAATGAAAGCGAGCGGGGAATATCACAGTCGTTAATGCGCCACGCAGCACGCAGAACATATCGGATTGCGTGGCCCACTAGTc > 2:141947/2‑251 (MQ=255) tAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGCCCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCAGTTATCAAGCCAACGCGCCGTAGCTGGCGGCAATGAAAGCGAGCGAGGAATATCACCGTAGTTAATGCGCCAAGCAGCGCGCGGAACATATCGAATTGCGTGTCCCCCTGGTccc > 2:310227/1‑249 (MQ=255) cTAAAGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGGTGTTATCCAGTTATCAAGCCAAAGCGCCGTAGCTGGAGGCAATGAAAGCGAGCGAGGAATATCACAGTCGTTAATGCGCCAAGCAGCGCGCAGAACATATCGGAATGCGTGTCCCACTGGACGcccc > 2:1677/1‑250 (MQ=255) gtgtgctGTTTATCAGGCCACTGCTTAATGTAATTCTCTGGAGTTGTAAAATTTGTAGACCGGATAAGGTAATCACGCCGCATCCGGCCTCAACAAAGCGCAAGGTGTTATCCAGTTATCAAGCCAAAGCACCGGAGCTGGCGGAAATGAAAGCGAGCGAGGAATATCGCCGTCGTTAATTCGCCAAGCAGCGCGCAGAACATATCGGATTGCGTGTCTCACTTGTCGCTCTGGGTGCCGAGaaatgcat < 2:152614/244‑6 (MQ=255) aaTTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCAGTTATCAAGCCAAAGCGCCGTAGCTGGCGGCAATGAAAGCGAGCGAGGAATATCACCGTCGTTAATGCGCCAAGCAGCGCGCAGAACATATCGGATTGCGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATa < 1:72812/251‑1 (MQ=255) tGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCAGTTATCAAGCCAAAGCGCCGTAGCTGGCGGCAATGAAAGCGAGCGAGGAATATCACCGTCGTTAATGCGCCAAGCAGCGCGCAGAACATATCGGATTGCGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATcg > 1:316680/1‑251 (MQ=255) ccgcATCCGGCATCAACAAAGCGCCAGTTGTTATCCAGTTATCAAGCCAAAGCGCCGTAGCTGGCGGCAATGAAAGCGAGCGAGGAATATCACCGTCGTTAATGCGCCAAGCAGCGCGCAGAACATATCGGATTGCGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACgcagc > 1:136804/1‑251 (MQ=255) ccgcATCCGGCATCAACAAAGCGCAAGTTGTTATCCAGTTATCAAGCCAAAGCGCCGTAGCTGGCGGCAATGAAAGCGAGCGAGGAATATCACCGTCGTTAATGCGCCAAGCAGCGCGCAGAACATAGCGGATTGCGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATACGATCCCTGACCCATTGCCAGCGCTGCCAACCACTCGAATAATTCATACATCCCGCTTATCGCCAGCGCCACgcagc > 1:316514/1‑251 (MQ=255) cGGCATCAAAAAAGCGCAAGTTGTTATACGGTTATCAAGCCAAAGCGCCGTAGCTGGCGGCAATGAAAGCGAGCGAGGAATATCACCGTCGTTAATGCGCCAAGCAGCGCGCAGAACATATCGGATTGCGTGCCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACACGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGACCAg < 2:5421/251‑1 (MQ=255) aacaaAGCGCAAGTTGTTATCCAGTTATCAAGCCAAAGCGCCGTAGCTGGCGGCAATGAAAGCGAGCGAGGAATATCACCGTCGTTAATGCGCCAAGCAGCGCGCAGAACATATCGGATTGCGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGACCAGGAACGcc > 1:327894/1‑251 (MQ=255) aaagcggcatgtgttATCCAGCTACCAAGCCCAAGCGCCGTAGCTGGCGGCAATGAAAGCGAGCGAGGAATATCCCCGTCGTTAATGCGCCAAGCAGCGCGCAGAACAGATCGGATTGCGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCTAGTAATGCATACATCGCGCTTATCGCCAGTGCCTCGAAGCAGACCAGGAACGccacc < 2:136804/240‑1 (MQ=255) gcgcAAGTTGTTATCCCGTTATCAAGCCAAACCGTCGTAGCTGGCGGCAATGCAAGCGAGCGAGGAATATCACCGTCGTTAATGCGCCAAGCAGCGCGCAGAACATATCGGATTGCGTGTCCCACTGGTCGCCCTGCGTGCCGAGAAAATCATCCGCTCCCTGCCCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGTCCAGGAACGccaccaat > 2:191632/1‑249 (MQ=255) tttATCCAGTTATCAAGCCAAAGCGCCGTAGATGGCGGCAATGAAAGCGAGCGAGGAATATCACCGTCGGTAATGCGCCAAGCAGCGCGCAGAACATATCGGATTGCGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGACCAGGAACGCCACCATTTTACGTcc < 2:165571/249‑1 (MQ=255) gttATCCAGTTATCAAGCCAAAGCGCCGTAGCTGGCGGCAATGAAAGCGAGCGAGGAATATCACCGTCGTTAATGCGCCAAGCAGCGCGCAGAACATATCGGATTGCGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGACCAGGAACGCCACCATTTTACGTcc < 1:310227/250‑1 (MQ=255) | GCTGGATAAATATCGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCGGTTATCAAGCCAAAGCGCCGTAGCTGGCGGCAATGAAAGCGAGCGAGGAATATCACCGTCGTTAATGCGCCAAGCAGCGCGCAGAACATATCGGATTGCGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGACCAGGAACGCCACCATTTTACGTCC > NC_000913/4344709‑4345177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |