| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,307,151 | G→A | P217S (CCT→TCT) | alsK ← | D‑allose kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,307,151 | 0 | G | A | 88.9% | 53.5 / ‑0.4 | 27 | P217S (CCT→TCT) | alsK | D‑allose kinase |
| Reads supporting (aligned to +/- strand): ref base G (2/1); new base A (11/13); total (13/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.96e-01 | |||||||||||
GATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGCAATAAAGCGCACGACCTGATGCGGCAGTGGACGGCGCAGGTACTTTTGGGTCATGGCAACGAGAGTCTCGCGTGGGAAGGCGGGCATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGGGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACACCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAG > NC_000913/4306908‑4307397 | gATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCAGCAATAAAGCGCACGACCTGATGCGGCAGTGGACGGCGCAGGTACTTTTGGGTCATGGCAACGAGAGTCTCGCGTGGGAAGGCGGGCATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGAGGCGttt > 1:178846/1‑251 (MQ=255) cAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCAGCAATAAAGCGCACGACCTGATGCGGCAGTGGACGGCGCAGGTACTTTTGGGTCATGGCAACGAGAGTCTCGCGTGGGAAGGCGGGCATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGAGGCGTTTTCCGCAt < 1:1257/251‑1 (MQ=255) atatTGCTGCGCCCTGAGCGCCATTAAAGTCAGAAGATGAGGCAGCAATAAAGCGCACGACCTGATGCGGCAGTGGACGGCGCAGGTACTTTTGGGTCATGGCAACGAGAGTCTCGCGTGGGAAGGCGGGCATAGCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGAGGCGTTTTCCGCATgg < 1:23022/251‑1 (MQ=255) atttcttatctcTGAGCGCCATTAAAGTCAGAAGAGGTGGCATCAATAAAGCGCGCGCCCTGATGCGGCAGAGGGCGGCGCAGGCACTTTTGGGTCAGGGCAACGATAGTCGCGCGTGTGAAGGCGGGCATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGAGGCGTTTTCCGCATGGa < 2:304367/239‑1 (MQ=255) tgctgcACACTGAGCGCCATTAAAGTCAGAAGGTGAGGCAGCAATAAAGCGCACGACCTGATGCGGCAGTGGACGGCGCCGGTACTTTTGGGTCATGGCAACGAGAGTCTCGCGTGGGAAGGCGGGCATATCCATCACGCCACCGCCCAGGATCACCGCCTCGGGATCGAAAAGGTTAATGCTGGTGGCAAGGGCCAGTGCCGCGTTTTC‑AAACAGACTCTGGACGAAAGAGACGTTTTCCGCATGGACg > 2:219250/1‑250 (MQ=255) gctgcACCCTGATCGCCATTAAAGGCAGAATATGAGGCAGCAATAAAGCGCACGACCTGATGCGGCAGTGGACGGCGCATGTACATTTGGGTCATGGCAACGAGAGTCTCTCGTGGGAAGGCGGGCATAGCCATCACGCCACCGCCCAGGATCCCCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGGGTTGTC‑AATCAGACTCTGGACGAAAGAGGCGTTTTCCTCATGGACGaa < 1:333161/251‑1 (MQ=255) aGCGCCATTAAAGTCAGAAGATGAGGCAGCAATAAAGCGCACGACCTGATGCGGCAGTGGACGGCGCAGGTACTTTTGGGTCATGGCAACGAGAGTCTCGCGTGGGAAGGCGGGCATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGAACGAACAGATTAATGCTGGTGGCAATGGCCAGTGCAGCGTTTTC‑AAGCAGACTCTGGACGAAAGAGGCGTTTTCCGCATGGACGAAAAGATCacgc > 2:193770/1‑250 (MQ=255) tAAAGCGCACGACCTGATGCGGCAGTGGACGGCGCAGGTACTTTTGGGTCATGGCAACGAGAGTCTCGCGTGGGAAGGCGGGCATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGAGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTAcc > 1:106521/1‑249 (MQ=255) cTGATGCGGCAGTGGACGGCGCAGGTACTTTTGGGTCATGGCAACGAGAGTCTCGCGTGGGAAGGCGGGCATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGAGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGcc > 1:317219/1‑250 (MQ=255) gACGGCGCAGGTACTTTTGGGTCATGGCAACGAGAGTCTCGCGTGGGAAGGCGGGCATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGAGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTg < 2:106521/251‑1 (MQ=255) aGGTACTTTTGGGTCATGGCAACGAGAGTCTCGCGTGGGAAGGCGGGCATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGAGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAg < 1:134729/251‑1 (MQ=255) tACTTTTGGGTCATGGCAACGAGAGTCTCGCGTGGGAAGGCGGGCATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGAGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGcc > 1:286636/1‑250 (MQ=255) atttttGGGTCATGGCAACTAGAGTCTCGCGTGGGAAGGCGGGCATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGATAGAACAGATTAATTCTGGTGGCAATGGCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGAGGCGTTTTCCGCATGGTCGAAAAGATCGCGCAATGGGTAATTGCGGGGCTTTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCa < 1:232629/248‑1 (MQ=255) cATGGCAACGAGAGTCTCGCGTGGGAAGGCGGGCATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGAGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTg < 1:193770/250‑1 (MQ=255) ggCAACGAGAGTCTCGCGTGGGAAGGCGGGCATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGAGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCca < 1:219250/250‑1 (MQ=255) gCAACGAGAGGCGCGCGTGGGAAGGCGGGCATATCCATCACGCCACCTCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGATTTC‑AAGCAGACTCTGGACGAAAGAGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATTGGTAATTTCGGGGCTGTTGTTCGAACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCcaca < 2:317219/251‑1 (MQ=255) ggggAAGGGGGGCATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCGGGTGGCAATGGCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGAGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGTGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCa < 2:286636/250‑1 (MQ=255) cGGGCATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGAGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTccc > 1:338651/1‑251 (MQ=255) cATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGAGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAggg < 1:300101/251‑1 (MQ=255) ggATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGGGGCGTTTTCCGCATGGACGAAAAGATCGCGCTATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGATGGGTCATATCTCCCa < 2:207119/211‑1 (MQ=255) ggATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGGGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCa > 1:207119/1‑211 (MQ=255) aaTGGCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGAAGCGTTTTCCGCCTGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAAGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATTTCCCCCAGGGGGATATGACCCAGTTCGCCTGCCACACCGTGTGCACCCGTCACCGGCGCAcactttatccccc > 2:122708/1‑239 (MQ=255) gggCCCGTTCCG‑GTTTTCCAACCAGACTCTGGACGAAAGAGGCGTTTTCCGCATGGACGAAAAGAGCGCGCAATGGGTAATTCCGGGGCTGTTGTTCGTACCAGCGTTTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACCCGCGCAGTGTTGGGTCATATCCCCCGGGGGGATATGCCCCAGTTCGCCTGCCACACCGTGTGCACCCGTCCACGGCGCACCGTTCATCCacac < 1:211253/249‑1 (MQ=255) ggCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGAGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGACTGCCACACCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTg > 1:290521/1‑251 (MQ=255) tC‑AAGCAGACTCTGGACGAAAGGGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACACCGTGTGCACCCGTCCACGgcg > 1:355390/1‑217 (MQ=255) attaGACTCTGGACGAAAGATGCGTTTTCCGCATGTACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGAGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCGATGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTACGCCTGCCACACCGTGTGCACCCGTCCAAGGAGCACCTGTCATCCCCGCTGCGCACACCATCCCCGTAcc > 2:134051/4‑251 (MQ=255) aaaGAGGCGTTTTCAGCATGGACGAAAAGATAGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGCTATGACCCAGTTCGCCTGCCACACCGTGTGCACCCGTCCACGGCGCACCGTTCCTCCACACTGCGAACCCCATCCCCGAACCGAGATAGgccgcccg > 2:53374/1‑249 (MQ=255) | GATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGCAATAAAGCGCACGACCTGATGCGGCAGTGGACGGCGCAGGTACTTTTGGGTCATGGCAACGAGAGTCTCGCGTGGGAAGGCGGGCATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTC‑AAGCAGACTCTGGACGAAAGGGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACACCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAG > NC_000913/4306908‑4307397 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |