| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,288,385 | G→A | V208I (GTT→ATT) | nrfA → | cytochrome c552 nitrite reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,288,385 | 0 | G | A | 90.3% | 71.5 / ‑1.1 | 32 | V208I (GTT→ATT) | nrfA | cytochrome c552 nitrite reductase |
| Reads supporting (aligned to +/- strand): ref base G (2/1); new base A (16/12); total (18/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
CGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCACGGTAAATGGGCGCGCGGCGGTCCGGAAATCGTCAA‑CAACTTAGGTTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAACCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCAT > NC_000913/4288155‑4288621 | cgcgTCTGATCCCGAAAGACGGCGAAGATGGCTACTTCCACGGTAAATGGGACCGCGGCGGTCCGGAAATCGTCAA‑CAACTTAGGTTGTGACGGTTGCCATAACACCGCCTCTCAAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTACCGTCCGTATGCGACTCGAGCGATGGAAGCCATAGGTAAACATATTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTAAGGGCCAttgg > 1:32610/1‑248 (MQ=255) gTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCACGGTAAATGGGCGCGCGGCGGTCCGGAAATCGTCAA‑CAACTTAGGTTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTgg > 1:288099/1‑249 (MQ=255) tCCAGAAAGACGGCGAAGATGGCTACTTCCACGGTAAATGGGCGCGCGGCGGTCCGGAAATCGTCAA‑CAACTTAGGTTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTAc > 1:325274/1‑251 (MQ=255) aGACGGCGAAGATGGCTACTTCCACGGTAAATGGGCGCGCGGCGGTCCGGAAATCGTCAA‑CAACTTAGGTTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGCCGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGGGGAGGATTACTTCGACg > 2:378645/1‑251 (MQ=255) gAAGATGGCTACTTCCACGGTAAATGGGCGCGCGTCGGTCCGGAAATCGTCAA‑CAACTTAGGTTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCaaaa > 1:113180/1‑250 (MQ=255) ttCCAAGGTAAATGGGCGCGCGGCGGTCCGGAAATCGTCAA‑CAACTTAGGTTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTa > 1:263792/1‑250 (MQ=255) tGGGCGCGCGGCGGTCCGGAAATCGTCAA‑CAACTTAGGTTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTgggg > 1:352431/1‑250 (MQ=255) ggcgcgGCGGCCCGGAAATC‑TCAAACAACTTGGGTTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGAc < 1:178328/250‑1 (MQ=255) ggcggTCCAGACATCGTCAA‑CAACTTAGGTTGTGCCGTTTGCCATAACACCGCCACTCCAGAGTTCGCCACAGGCAAACCGGAGTTAACCCTTTCCCGTCCGCATGCGGATCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTACGACACGCAATCGATGGTTTGCGGGCAGTGCCATGTGGAGAATTACTTCGACAGCAAAAACAACACGGTTAAATTCCCGTGGGATGACggaat > 2:365802/1‑248 (MQ=255) cgccaa‑caaCTTAGTTCGTGCCAATTGCCATAACTCCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTATCCCGTTCCCTTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGTTTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGTTTAAATTCCCGTGGTATGACGGCATGAAAGTCGAAAata < 1:149574/248‑1 (MQ=255) gTCAA‑CAACTTAGGTTGTGCCGATTGACATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAatat > 1:335133/1‑251 (MQ=255) ttgttcgtgcctatttgtatacaacCGCCTCTGCAGAGTTCGCCAAAGGCAAACCGGAGTGAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAATCCTTTTGAGAAATCCGGACGTTTCGACCAGCAATCGATGAGTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCTGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTa < 1:81855/227‑1 (MQ=255) ggtgtgccatatgacatgaatgacGCCTCTCCAGAGTTCGCAAAATGCATACCGGAGTTTACCCTTGCCCGTCCGTATGCGGCTCGGTCGATGGAAGCCAGTGGTTAACCTGTTGAGTAAGCCGTACTTTTCGACCAGCAATCGATGATTTTCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTTTCGTGGGATTACGGCATGAAAGTCGAAAATATGGAGCAttatta < 2:30320/228‑1 (MQ=255) gTTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGAAGTATTAc > 1:261242/1‑251 (MQ=255) cGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGATAAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGAGGTTAAATTCCCGGGGGCTGACGGCATGAAAGTCGAAAATATGGAGCAGTTTTACGCCAAAATTGCCTTCTCTgcct > 2:227870/1‑248 (MQ=255) ctcCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGa < 1:296737/249‑1 (MQ=255) cAGAGTTAGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGATCAGTATTACGACAAAATTGCCTTCGCTGACTGGACTAAc < 2:53218/251‑1 (MQ=255) agagTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACt < 1:378645/251‑1 (MQ=255) cccAAAGGCAAACCGGAGTTAACCCTTTCCCGGCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGAACGTTTCGACAAGCCATCGATGATTTGCGGTCAGTGCCAAGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGCAAATATGGAGAAGTATTACGACAAAATTGCCTTCTCTGCCTGGACTAACTCCCTGTc > 1:33943/2‑251 (MQ=255) aGGCAAACCGGAGTTAACCCCTTCCAGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGACGGACGTTTCGACCAGCAATCGATGATGTGCGGTCAGTGCCATGTGGAGTATTCCTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGTCAGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGACTTCTCTGTCTGGACGAACTCCCTGTCGaaaa < 2:1847/251‑1 (MQ=255) cAAACCGGAGTTAACCCGTACACGTCCGTATGCGGCTCGAGCGATGGAAGCCATTGGAAAACCTTTTGCGAAAGCCGGACGTTTCGACCAGCCATCGATGATTTTCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAACTTCCCGTGGGATGACAGCATGAAAGACGAAAATATGGAGCTGTATTAAGACACACTTGCATTCTCTAACTGGACTAACTCCCTGTAAAAAACGc > 2:28012/1‑251 (MQ=255) aaCCTGAGTTAACCCTGTCCCGGCCGTAGGCGGCGCGCGCGATGGAAGCCAATGGGAAACCTGTTGAGAAAGGCGGACTTTTCGACCAGCAAACGATGGTTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAAAAAAGCGGTTAAAGTCCCGTGGTATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCa < 2:140171/251‑1 (MQ=255) cGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGaa < 1:130446/251‑1 (MQ=255) aaGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGAGACATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTATGACTGGACTAACTCCCTGTCGACAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGCAACCTGGACAGCGGGc > 2:118609/1‑251 (MQ=255) aaaCCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAACCTGGACAGCGGGCATTCACGGTa < 1:104873/250‑1 (MQ=255) cTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAACCTGGACAGCGGGCATTCACGGTaaaaa > 1:17253/1‑250 (MQ=255) ttGAGAAAGCCGGACGTTTCGACCAGCAAGCGATGATTTGCGGTCAGTGCCATGTGGAGTAGTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAACCTGGACAGCGGGCATTCACGGTAAAaacaa < 1:176314/250‑1 (MQ=255) tGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAACCTGGACAGCGGGCATTCACGGTAAAaacaac < 1:227870/250‑1 (MQ=255) gaAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTCAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAACCTGGACAGCGGGCATTCACGGTAAAAACAACGTg > 1:287250/1‑250 (MQ=255) cGGACGTTCCGACCAGCAATCGAGGATTTGCGGTCAGTGTCATTTGGATTATTACTTCGACGGCAAAAGCAAAGCGGTTAAATTCCCGTGGTATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGCCAAAATTGCCTTCTCTGTCGGCACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAACCTGGACAGCGGTCAGTCACGGTACAAACAACGTTTCCTGTa < 2:357529/251‑1 (MQ=255) gccGTTTCGACCAGCAATCGATGATTTGCGGGCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAAAAAAGCGGTTAAATTCCCGGGGGATGACGGCATGAAAGTCGAAATTATGGAGCAGTATTACGAGAAACTTGCCTTCTCTGACTGGACTAACTACCTGTCGAAAACTCCAATGCTGATAGCGCAGCACCCGGAATATGAAACCTAGACAGAGTGCATTCACGGTAAAAACAACGTTACATGTagc > 2:104458/3‑249 (MQ=255) cAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGCATATGAAACCTGGACAGCGGGCATTCACTGAAAAAACAACTGGACCTGTATCGACTGCCat > 2:65710/1‑249 (MQ=255) | CGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCACGGTAAATGGGCGCGCGGCGGTCCGGAAATCGTCAA‑CAACTTAGGTTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAACCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCAT > NC_000913/4288155‑4288621 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |