| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,719,429 | G→A | intergenic (‑385/‑49) | yiaF ← / → yiaG | DUF3053 domain‑containing protein YiaF/putative DNA‑binding transcriptional regulator YiaG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,719,429 | 0 | G | A | 92.0% | 55.2 / ‑3.1 | 25 | intergenic (‑385/‑49) | yiaF/yiaG | DUF3053 domain‑containing protein YiaF/putative DNA‑binding transcriptional regulator YiaG |
| Reads supporting (aligned to +/- strand): ref base G (0/2); new base A (14/9); total (14/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.83e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.18e-01 | |||||||||||
TGTTGTTTCATTGTTAAAAAATGATAGTGCCGTTGC‑CTTTTTTGTAGCCAGAGATTTACGCCTTCGCAGAAGGTTAGATTTTCGAAATCTTTACAAAACAGGAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATGAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCTGACGCACAGAACAACGTCCTGTACCGAAATTGAGCAGTTACGAAAAGGGACAGGATTAAAAATCGATGATTTCGCCCGGGTTTTGGGCGT > NC_000913/3719189‑3719650 | tgttgtTTCATTGTTAAAAAATGTTAGTGCCGTTGC‑CTTTTTTGTAGCCAGAGATTTACGCCTTCGCAGAAGGTTAGATTTTCGAAATCTTTACAAAACAGGAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATg > 1:213220/1‑251 (MQ=255) aaaaaaTGATTGTGCCCTTGC‑TTTTTTTGTAGCCAGATATTTACGCCGTAGCAGATTGTTAGATTTTCGAAATCTTGAAAAAACAGGAGTGGTAAGTGATCTATCGGCATTTATCAGATCGTTAGGTGGCTACAAGTCACTCTAAATGACAGGCTGTATCGAATCATAGTCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCTACTAGTCTTAATAAGCTTCGATGCAATTCACGATccc < 2:379990/250‑1 (MQ=255) tGATAGTGCCGTTGCATTTTTTTGTAGCCAGGGATTTACGCCTTCGCAGAAGGTTAGATTTTCGAAATCTTTACAAAACAGGAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAgtg > 1:90757/1‑251 (MQ=255) tttACGCCTTCGCAGAAGGTTAGATTTTCGAAATCTTTACAAAACAGGAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATaa > 1:284959/1‑246 (MQ=255) aGGTTAGATTTTCGAAATCTTTACAAAACAGGAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATGAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGtt < 1:96147/251‑1 (MQ=255) tcgATTTTCGTAATCTTTACAAAAAAGGAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTAGTTAGCTATCAGTCACGCTAAATAACAGGATGAATCGAATCATAGCCAGAGCATGCCCTGAATTCACCCCGCTGTGTATGCTTTTCACGACTATTCTTAATAAGCTTCGATGCAATTAACGATCATGCAGGGTGATTTGAGGAGTTTTCATTGGACTATAAAGATCAAATGCATGAGCTGTTgggc > 2:36743/3‑248 (MQ=255) aaacTTTACAAAACAGGAGTGGTAAGAGATACATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGAGCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACa < 1:55886/248‑1 (MQ=255) tACAAAACAGGAGTGGTAAGAGATATATCGGCGTTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGt > 1:219999/1‑251 (MQ=255) tACAAAACAGGAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCATGGAACAGATTGt > 1:80519/1‑251 (MQ=255) gaTATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGGGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGa > 1:12206/1‑250 (MQ=255) gaTATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGa > 1:303850/1‑250 (MQ=255) cATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCTg < 1:265956/251‑1 (MQ=255) ttAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCTGACGCACAGaacaac > 1:212326/1‑251 (MQ=255) ataAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGAATGCCCTGAATTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCACTTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGACTATAAAGATCCAATGCATGAGCTGTTGCGCAGCCTGGACCAGATTGTTTTTACAGATGAAATGCAGAAAATTACCCTGACGCACAGagccacgacctgatcc > 2:14199/1‑236 (MQ=255) aaGTCACGGTAAATGACAGGCTGAATCGAATCATTGCCATAGTATGCCCTGACTGCATCCCGCTTTGTCTGCTCATCCCGACTATTCTTAATGATCTTCGATGCAATTCACGATCCAGCACTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCTAATGCATGAGCAGTTAAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACTCAGAAAATTACCCTGACGCACACAACAATGTCCTGTACCGa < 2:227090/251‑1 (MQ=255) aacTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGACCTGACGTCAACCCGCTGTATCTGCTTTTCCCGACTATTCATAATAAGCTTCGATGCAAATCACGAACCAGCAGTGTGATTTGAGGAGTTGTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGATTTTAAAGATGAAACGCATAAAATTACCCAGACGCACAGAACAACGTCCTGTACCGAAAtaga < 2:179054/249‑4 (MQ=255) aaaTGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCTGACGCACAGAACAACGTCCTGTACCGAAATTGAGc > 1:40758/1‑249 (MQ=255) gACAGGCTGAAACGAATCATAACCAGATCATGCCCTGTCTTCAACCCGATGTGTCTGCTTTTCCCGACTATTCGTAAGAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCATAAAATTACCCTGACGCAAAGAACAACGTCCTGTACCGAAATAGAGCAGTTa < 2:219999/250‑1 (MQ=255) tGAATCGAATCATCGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCACGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCTGACGCACAGAACAACGTCCTGAACCGAAATTGAGCAGTTACGaacgg > 2:222518/1‑247 (MQ=255) tGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCTGACGCACAGAACAACGTCCTGTACCGAAATTGAGCAGTTa < 1:222518/243‑1 (MQ=255) gaatcATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCTGACGCACAGAACAACGTCCTGTACCGAAATTGAGCAGTTACGAAAAGGGAcggg > 2:303503/1‑248 (MQ=255) gaatcATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCTGACGCACAGAACAACGTCCTGTACCGAAATTGAGCAGTTACGAAAAGGGACAgg < 2:303850/251‑1 (MQ=255) gCATGCCCTTACTGCACCCCGCTGTGTCTGCTATTCCCGACTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGAGTTGAGGAGTTTTCAATGTAATATAAAGAGCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGGTTTTAAAGATGAAACGCATAAAATTACCCTGACGCACAGAACAACGTCCTGTACCGAAATTGAGCAGTTACGAAAAGGGACAGGATTAAAAATCgatg < 1:352078/251‑1 (MQ=255) gACTTCACCCCGCTGTGTATGCTTTTCCCGGCTATTCTTAATAAGCTTCGATGCAATTCACGATCCCGCAGTGTGAGTTGAGGAGTTTTCAATGGAAGATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCTGACGCACAGAACAACGTCCTGTACCGAAATTGAGCAGTTACGAAAAGGGACAGGATTAAAAATCGATGATTTCGc < 1:232160/249‑1 (MQ=255) tgtgTCTGCTTTTCCCGACTATTCTTAATAAGCTTCGATGAAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCTGACGCACAGAACAACGTCCTGTACCGAAATTGAGCAGTTACGACAAGGGACAGGATTAAACATCGATGATTTCGCCCGGGTTTTGGGCGt > 2:83914/1‑251 (MQ=255) | TGTTGTTTCATTGTTAAAAAATGATAGTGCCGTTGC‑CTTTTTTGTAGCCAGAGATTTACGCCTTCGCAGAAGGTTAGATTTTCGAAATCTTTACAAAACAGGAGTGGTAAGAGATATATCGGCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCCCTGACTTCACCCCGCTGTGTCTGCTTTTCCCGACTATTCTTAATGAGCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAATGGAATATAAAGATCCAATGCATGAGCTGTTGAGCAGCCTGGAACAGATTGTTTTTAAAGATGAAACGCAGAAAATTACCCTGACGCACAGAACAACGTCCTGTACCGAAATTGAGCAGTTACGAAAAGGGACAGGATTAAAAATCGATGATTTCGCCCGGGTTTTGGGCGT > NC_000913/3719189‑3719650 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |