| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,647,949 | C→T | intergenic (‑161/‑114) | dinQ ← / → agrA | membrane toxin DinQ/small RNA AgrA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,647,949 | 0 | C | T | 95.5% | 57.2 / ‑4.3 | 23 | intergenic (‑161/‑114) | dinQ/agrA | membrane toxin DinQ/small RNA AgrA |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (9/12); total (9/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.33e-01 | |||||||||||
CTATCAGTTCAGAAGCTGAAGCAGAAAGCGGATCAGTTCCAGCAGCGCAATTAACGCCCCTAGAACGATGATTGCTTTATCAATCACCCGTTTTCTCCATGCGATGGAGTGAGAATGCATCCGCTTACTCATCCACTGCCTGTCACGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATGCGCATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAG > NC_000913/3647702‑3648191 | cTATCAGTTCAGCAGCTGACGCCGAAATCGGATCAGTTCCCGCAGCGCAATTAACTACCCTAGAACGATGATTGCTTTATCAATCACCCGTTTTCTCCATGCGATGGAGTGAGAATGCATCCGCTTACTCATCCACCGCCTGTCACGTCGCCTGTCTCATTGTTAGATAAGAACTCTCTCACTCCTGCCAGAGCATCCGTTCAAGGCATCACACGTACCTCTGCCCAGGCCTTTGATAGCGTTTTTgctct > 2:3710/1‑248 (MQ=255) ccAGTTCAGAAGCGGAAGCAGAAAGCGGCTCAGTCCCATCAGCGCAATTAACGCCCCTAGAACGATGATTGCTTTATCAATCACCCGTTTTCTCCAAGCGATGGAGTGAGAATGCATCCGCTTACTCATCCACTGCCGGTCACGGCGCATGTCTCATTGTTAGAGAAGAACTCTCTCACTCTGGCCAGAGCATCAGTTAACGGCACCACCCGTCCTTCTGACCAGGGCTTTGAAAGCGTTTATGCGCATTg < 2:151278/250‑1 (MQ=255) cGGATCAGTTCCAGCAGCGCAATTAACGCCCCTAGAACGATGATTGCTTTATCAATCACCCGTTTTCTCCATGCGATGGAGTGAGAATGCATCCGCTTACTCATCCACTGCCTGTCACGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATGTGCATTGCCAGAGTGAAAATGCCTCAGAGCTa < 1:336124/251‑1 (MQ=255) gATCAGTTCCAGCAGCGCAATTAACGCCCCTAGAACGATGATTGCTTTATCAATCACCCGTTTTCTCCATGCGATGGAGTGAGAATGCATCCGCTTACTCATCCACTGCCTGTCACGGCGCATGTCTCATTGTTAGATCAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATGTGCATTGCCAGAGTGAAAATGCCTAAGAGCTAAc > 1:93187/1‑251 (MQ=255) ccAGCAGCGCAATTAACGCCCCTAGAACGATGATTGTTTTATCAATCACCCGTTTTCTCCATGCGATGGAGTGAGAATGCATCCGCTTACTCATCCACTGCCTGTCACGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATGTGCATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATaa < 1:245249/250‑1 (MQ=255) gcagcGCAATTAACGCCCCTAGAACGATGATTGCTTTATCAATCACCCGTTTTCTCCATGCGATGGAGTGAGAATGCATCCGCTTACTCATCCACTGCCTGTCACGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATGTGCATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCAt < 1:325376/251‑1 (MQ=255) gcgcAATTAAAGCCCCTATAACAATGATTGCTTTATCAATCACAAGATTTCTCCATGCGATGGAGAGAGAATGCATCCGCTTACTCATCCCATGCCTGTAACGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGACCCACCCTCACTTCTGACCCGGACTTTGAAAGAGTTTATGTGCATTGTCAGATTGACAATGCCACAGATCTAACTCAATAATCGTAc > 2:70614/1‑250 (MQ=255) aaTTTACGACCCTAGAACGATGATTTCTTTATCAATCACCCGTTTTCTCCATGCGATGGAGTGAGAATGCATTCGCTTACTCATCCTCTGCCTGTCACTGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCAACACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATGTGCATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTAc < 2:208924/251‑1 (MQ=255) cccTAGAACGATGATTGCTTTATCAATCACCCGTTTTCTCCATGCGATGGAGTGAGTATGCACCCGCTTACGAATCCACTGCTTGTCACGGCGCATGTCTCATGGTTAGATAAGAACTCTCTCTCTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATGTGCATGGCCAGAGTGAAAATGCCTCAGAGCTAACTGGAGAATCATACATTACATGCAgggt < 2:152097/251‑3 (MQ=255) atgatTGCTTTATCAATCACCCGTTTTCTCCATGCGATGGAGTGAGAATGCATCCGCTTACTCATCCACTGCCTGTCACGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATGTGCATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAAcc > 1:254270/1‑249 (MQ=255) ccATGCGATGGAGTGAGAATGCATCCGCTTACTCATCCACTGCCTGTCACGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATGTGCATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATg < 1:301452/248‑1 (MQ=255) ccATGCGATGGAGTGAGAATGCATCCGCTTACTCATCCACTGCCGGTCACGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATGTGCATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATg < 1:141224/248‑1 (MQ=255) tGGAGTGAGAATGCATCCGCTTACTCATCCACTGCCTGTCACGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATGTGCATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCAtt > 1:204684/1‑251 (MQ=255) atccggatccTCATCCACTGCCGGTTACGGCGTATGTCTCATTGTTAGATAAGAACTCTCTCAATCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATGTGCATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGCTAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCGTGCAATAGTTTCAGTATGGTATTTGCATTGATGCGTTAgatg < 2:277497/241‑1 (MQ=255) tacgcacccACTGACTGTCACGGCGCATGTCTGAATGTTATAGAAGAACGCTCGCACTCCGGCCAGAGCATCAGTTAACGGCACCACACGTACTTCGGACCAGGACTTTGAAAGCGTGTATGTTTATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCATCACGTCCTTGCAAGAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATTATGGCTa < 2:322621/243‑1 (MQ=255) ccgtcTGTAACGTCGCATGTCTCAATATTAGAAAAGATCTTTCTCAATCCGGCCAGAGCATCAGTTAACGGCACCACCCTGACTTCTGACCAGGACTTTGAAAGCGTTTACGTGCATTGCCAGAGTGAAAATGACTAAGAGCTAACTGGATAATCAGACAGTACATGCAGGTTTTAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGAAGATGGCTATCTCTCTCCat < 2:110647/247‑2 (MQ=255) ccgTCACCGCGCATGTCTCATTGTTCGCTAAGAACTCTATCACTCCGGCCAGCGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGATTATGTGCATTGCCAGATTAAAAATGCCTCAGAGCTAACTGGCTAATCATACAGTACATTCCTGTTATAACACCAGCTCGACCTTGCAATAGTTTCAGAATGGAATTAGCATTGATGAGTTAGATGATTGCAATCTAACTCCAgct > 2:248939/3‑247 (MQ=255) tAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATGTGCATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAAc > 1:94868/1‑152 (MQ=255) tAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATGTGCATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAAc < 2:94868/152‑1 (MQ=255) aataaCTCTCGCTCTCCTGCCAGAGCATCAGTTCACGGCACCACCCGTACTTCTTACCAGGACGTGGAAAGCGGTTATGTGCATTGCCAGAGTGAAAATTCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTTCTATAGTTTCATTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGATCTCCCAACTCAGGGCTGGAAAGTaaaa < 2:326312/248‑1 (MQ=255) cccGTACTTCTGACCAGGACTTTGAAAGCGTTTATGTGCATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCggcca > 2:382125/1‑246 (MQ=255) ccAGGACTTTGAAAGCGTTTATGTGCATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACg > 1:92081/1‑251 (MQ=255) aaGCGTTTATGTGCATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTg > 1:23866/1‑250 (MQ=255) cGTTTATGGTCATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATTCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCTACCAACTCATGGCTGGAAAGGAAAAAACCGACGCAAAGACGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTTAAAg < 2:263568/251‑1 (MQ=255) | CTATCAGTTCAGAAGCTGAAGCAGAAAGCGGATCAGTTCCAGCAGCGCAATTAACGCCCCTAGAACGATGATTGCTTTATCAATCACCCGTTTTCTCCATGCGATGGAGTGAGAATGCATCCGCTTACTCATCCACTGCCTGTCACGGCGCATGTCTCATTGTTAGATAAGAACTCTCTCACTCCGGCCAGAGCATCAGTTAACGGCACCACCCGTACTTCTGACCAGGACTTTGAAAGCGTTTATGCGCATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAG > NC_000913/3647702‑3648191 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |