| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,630,221 | C→T | E128K (GAA→AAA) | yhiI ← | putative membrane fusion protein YhiI |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,630,221 | 0 | C | T | 96.7% | 83.6 / ‑4.1 | 30 | E128K (GAA→AAA) | yhiI | putative membrane fusion protein YhiI |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (13/16); total (14/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.11e-01 | |||||||||||
ATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGCCGCTTTAGAAGCCGATACCTGAGCTTTCGCCGATTCCAGCGCAGCTCGGGCGCTCTCAGCGGCGGCGCGATCGTCATCCAGCTGTTGCGCAGAAATAGCCCCTCGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTCTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAGTTTCGCTTTGTCGTTGCTCCAGCAAAGCCTGCGCGGCAGCAACGGCGCTTTGTGCCTCTTTGATTTGCGCGATGGCTTCCAGTCGCTGTTCCTGCAACACGCGAGTATCCATCTTCGCCAGCACTTCACCTTCGCGAACAAACTTGCCTTCTTTCACCAGAATGGTGTCGATACGCCCG > NC_000913/3629979‑3630438 | atCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGCCGCTTTAGAAGCCGATACCTGAGCTTTCGCCGATTCCAGCGCAGCTCGGGCGCTCTCAGCGGCGGCGCGATCGTCATCCAGCTGTTGCGCAGAAATAGCCCCTCGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTgg < 1:122138/250‑1 (MQ=255) cGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGCCGCTTTAGAAGCCGATACCTGAGCTTTCGCCGATTCCAGCGCAGCTCGGGCGCTCTCAGCGGCGGCGCGATCGTCATCCAGCTGTTGCGCAGAAATAGCCCCTCGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGa < 1:310292/251‑1 (MQ=255) gggCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGCCGCTTTAGAAGCCGATACCTGAGCTTTCGCCGATTCCAGCGCAGCTCGGGCGCTCTCAGCGGCGGCGCGATCGTCATCCAGCTGTTGCGCAGAAATAGCCCCTCGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCg < 1:182333/250‑1 (MQ=255) tgtgCCGCTTCGACGCGGTTGTGCGCCGTCATGATTTTGGTGCGTTCCGCTTCTCTCGCCGCTTTAGAAGCTGATACCTGATCTTTCGCCGATTCCAGCGCAGCTCGGTCGCTCTCAGCGTCGGCGCGATCGTCATCCAGCTGTTGCGCAGAAATAGCCCCTCGTTGGGCCTGTGATCGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCat < 1:356680/250‑2 (MQ=255) gtgCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATCGCCGCTTTAGAAGCCGATCCCTGTGCTTTCGCCGATTCCCGCGCAGCTCGGGCGCTCTCAGCGGCGGCGCGATCGTCATCCCGCTGTTGCGCAGAAATAGCCCCTCGTTGGACCAGTGAACGGGAACGCGTATGAAGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACg > 1:352275/1‑250 (MQ=255) gtgCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGCCGCTTTAGAAGCAGATACCTGAGCTTTCGCCGATTCCAGCGCAGCTCGGGCGCTCTCAGCGGCGGCGCGATCGTCATCCAGCTGTTGCGCAGAAATAGCCCCTCGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACg > 1:239199/1‑250 (MQ=255) gCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGCCGCTTTAGAAGCCGATAACTGCGCTTTCGCCGATTCCAGCGCAGCTCGGGCGCTCTCAGCGGCGGCGCGATCGTCATCCAGCTGTTGCGCAGAAATAGCCCCTCGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAGTTTc > 1:250959/1‑251 (MQ=255) gcgcCTGAATGATATTGGTGCGTGCCGCTTCTATAGCCGCTTTAGAAGCCGATACCTGAGCTTTCGCCGATTCCAGCGCAGCTCGGGCGCTCTCAGCGGCGGCGCGATCGTCATCCAGCTGTTGCGCAGAAATAGCCCCTCGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAGTTTCGCTTTGTCGTTGCTcc < 1:110476/251‑1 (MQ=255) tataGCCGCTTTAGATGCCGATACCTGAGCTTTCGCCGATTCCAGCGCCGCTCGGGCGCTCTCAGCGGCGGCGCGATCGTCATCCAGCTGTTGCGCCGAAATAGCCCCTCGTTGGGCCAGTGTACGGGAACGCGTATGACGTTTTGCTACGGATTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAATTTCGCTTTGTCGTTCACCCAGCAAAGCCTGCCCGGAAGCAACGGCGCttt > 2:144906/1‑251 (MQ=255) attgCCGCTGTAGAAGCCGATACCTGAGCTTTCGCCGATTCCAGCGCAGCTCGGGCGCTCTCAGCGGCGGCGCGATCGTCATCCAGCTGTTGCGCAGAAATAGCCCCTCGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAGTTTCGCTTTGTCGTTGCTCCAGCAAAGCCTGCGCGGCAGCAACGGCGCTTtg < 1:175684/248‑1 (MQ=255) gaggcgataccggggatttCGCCGATTCCAGCGCAGCTCGGTCGGTCTCAGCTGCGTCGCGATCGTCATCCAGCTGTTGCGCAGAAATAGCCCCTCGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCCGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGTTCGAGTTTCGCGTTGTCGTGGCGCCAGCAAAGCCTGCGCTGCAGCAACGGCGCTGTGTGCCTCTGTGAtt < 2:351110/235‑1 (MQ=255) aaGCCTATATCTGAGTTGTCGCCTATTCAGGCGAAGCTCGGGCGCTCTCAGCGGCGGCGCGATCGTCATCCAGCTGTTGCGCAGAAATAGCCCCCCTTGGGGCCAGTGAACGGGAATGCGTATGACTCTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAGTTTCGCTTTGTCGTTGCTCCAGCAAAGCCTGCGCGGCATCAACGGCGCTTTGTGCCTCTTTGAtt < 2:193294/251‑1 (MQ=255) cGATTCCAGCGCAGCTCGGGCGCTCTCAGCGGCGGCGCGATCGTCATCCAGCTGTTGCGCAGAAATAGCCCCTCGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAGTTTCGCTTTGTCGTTGCTCCAGCAAAGCCTGCGCGGCAGCAACGGCGCTTTGTGCCTCTTTGATTTGCGCGATGGCTTCCAGTCGCt < 1:48811/251‑1 (MQ=255) cGATTCCAGCGCAGCTCGGGCGCTCTCAGCGGCGGCGCGATCGTCATCCAGCTGTTGCGCAGAAATAGCCCCTCGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTACAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAGATTCGATTTGTCATTGCTCCAGCAAAGCCTGCGCGGCAGCAACGGCGCTTTGTGCCTCTTTGATTTGCGCGATGGCTTCCAGTCGCt > 2:334286/1‑251 (MQ=255) cgcTCTTAGCGGCGTCGCGATCGTCAGCCAGCTGTTGCGCAGAAATAGCCCCTCGTTGGGCCAGTGAACGGGAAGGCGTTTGACGTTTTGCTACGGAGTCCAGTTTGGCCTGGCGTTGATTACCCAGCGACTGGGCTGCACGAGGTTCGGTTTGTCGTTGCTCCAGCAAAGCCTGCGCGTCAGCAACGGCTCTTTGTTCCTCTTTGATTTGCGCGATGGCTTCCAGTCGCTGTTCCTGCAACACGCGAGTa < 1:183033/251‑1 (MQ=255) tcAGCGGCGGCGCGCTCGTCATCCAGCTGTTGCGCAGAAATAGCCCATCGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTCTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAGTTTCGCTTTGTCGTTGCTCCAGCAAAGCCTGCGCGGCAGCAACGGCGCTTTGTGCCTCTTTGATTTGCGCGATGGCTTCCAATCGCTGTTCCTGCAACACGCGAGTATCCAt > 1:316289/1‑251 (MQ=255) cAGCGGCGGCGCGATCGTCATCCAGCTGTTGCGCAGAAATAGCCCCTCGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAGTTTCGCTTTGTCGTTGCTCCAGCAAAGCCTGCGCGGCAGCAACGGCGCTTTGTGCCTCTTTGATTTGCGCGATGGCTTCCAGTCGCTGTTCCTGCAACACGCGAGTATCCAt < 1:9139/250‑1 (MQ=255) gcggcggcgCGATCGTCATCCAGCTGTTGCGCAGAAATAGCCCCTCGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAGTTTCGCTTTGTCGTTGCTCCAGCAAAGCCTGCGCGGCAGCAACGGCGCTTTGTGCCTCTTTGATTTGCGCGATGGCTTCCAGTCGCTGTTCCTGCAACACGCGAGAATCCATCtt > 1:294004/1‑251 (MQ=255) ggcggcgCGATCGTCATCCAGCTGTTGCGCAGAAATAGCCCCTCGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAGTTTCGCTTTGTCGTTGCTCCAGCAAAGCCTGCGCGGCAGCAACGGCGCTTTGTGCCTCTTTGATTTGCGCGATGGCTTCCAGTCGCTGTTCCTGCAACACGCGAGTATCCATCTTCg < 1:68074/251‑1 (MQ=255) cggcgCGATCGTCATCCAGCTGTTGCGCAGAAATAGCCCCTCGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAGTTTCGCTTTGTCGTTGCTCCAGCAAAGCCTGCGCGGCAGCAACGGCGCTTTGTGCCTCTTTGATTTGCGCGATGGCTTCCAGTCGCTGTTCCTGCAACACGCGAGTATCCATCTTCGcc > 1:72934/1‑251 (MQ=255) ggcgCGATCGTCATCCAGCTGTTGCGCAGAAATAGCCCCTCGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAGTTTCGCTTTGTCGTTGCTCCAGCAAAGCCTGCGCGGCAGCAACGGCGCTTTGTGCCTCTTTGATTTGCGCGATGGCTTCCAGTCGCTGTTCCTGCAACACGCGAGTATCCATCTTCGcc > 1:298789/1‑250 (MQ=255) cAGAAATAGCCCCTCGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAGTTTCGCTTTGTCGTTGCTCCAGCAAAGCCTGCGCGGCAGCAACGGCGCTTTGTGCCTCTTTGATTTGCGCGATGGCTTCCAGTCGCTGTTCCTGCAACACGCGAGTATCCATCTTCGCCAGCACTTCACCTTCGCGAACAAACTTg < 1:42012/251‑1 (MQ=255) aGAAATAGCCCCTCGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAGTTTCGCTTTGTCGTTGCTCCAGCAACGCCTGCGCGGCAGCAACGGCGCTTTGTGCCTCTTTGATTTGCGCGCTGGCTTCCAGTCGCTGTTCCTGCAACACGCGAGTATCCATCTTCGCCAGCAATTCACCTTCGCGCACAAACTTGc > 2:200067/1‑251 (MQ=255) gAAATAGCCCCTTGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAGTTTCGCTTTGTCGTTGCTCCAGCAAAGCCTGCGCGGCAGCAACGGCGCTTTGTGCCTCTTTGATTTGCGCGATGGCTTCCAGTCGCTGTTCCTGCAACACGCGAGTATCCATCTTCGCCAGCACTTCACCTTCGCGAACAAACTTGcc < 1:155140/251‑1 (MQ=255) aTAGCCCCTCGATGGGCCAGTACACGGGAACGAGTATGACGATTTGCTAAGGAGTCCAATTTTGCCGGACGTTGAGTAACAAGCGCCTGAGCGGCACGCGTTTCGCTTTGTCGTAGCTCCAACAAAGCCTGCGCGACCGCAACGGCGCTATGTGCATCTTTGATTTGCGCGATGGCTTCCAGTCGCTGTTCCGGCAACACGCGAGTATACATATTAGCCCGCACTTCACCTTCGCGAAACAACTTGCcttc > 2:233054/1‑251 (MQ=255) gagcaccTCGTTGGGCCAGTGAACGGGAAAGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAGTTTCGCTTTGTCGTTGCTCCAGCAAAGCCTGCGCGGCAGCAACGGCGCTTTGTGCCTCTTTGATTTGCGCGATGGCTTCCAGTCGCTGTTCCTGCAACACGCGAGTATCCATCTGCGCCAGCACTTCACCTTCGCGAACAAACTTGCcttct < 1:281434/246‑1 (MQ=255) ggCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAGTTTCGCTTTGTCGTTGCTCCAGCAAAGCCTGCGCGGCAGCAACGGCGCTTTGTGCCTCTTTGATTTGCGCGATGGCTTCCAGTCGCTGTTCCTGCAACACGCGAGTATc > 2:150336/1‑195 (MQ=255) ggCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAGTTTCGCTTTGTCGTTGCTCCAGCAAAGCCTGCGCGGCAGCAACGGCGCTTTGTGCCTCTTTGATTTGCGCGATGGCTTCCAGTCGCTGTTCCTGCAACACGCGAGTATc < 1:150336/195‑1 (MQ=255) aCGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTTTGCCTGGCGTTGATTAACCAACGACTGTGCGGCACGAGTTTCGCTTTGTCGTTGCTCCAGCAAAGCCTGCGCGGCAGCAACGGCGCTTTGTGCCTCTTTGATTTGCGCGATGGCTTCCAGTCGCTGTTCCTGCAACACGCGAGTATCCATCTTCGCCAGCACTTCACCTTCGCGAACACACTTGCCTTCTTTCACCAGAATGGTGTCGATAc > 1:53228/1‑251 (MQ=255) aaCGCGTATGACGTTTTGCTACGGAGACCAGTTTTACCTGGAGTTTATTAACCAGCGACTGTGCGGCACGAGTTTCGCTTTGTCGTTGCTCCAGCAAAGCCTGCGCGGCAGCAACGGCGCTTTGTGCTTCTTTGATTTGCGCAATGGCTTCCAGTCGCTGTTACTGCAACACGAGAGCACCCATCTTCGCCACCCCCTCACCTTCGCGACCAAACTTGCCTTCTTTCACCACAATGGTGTCGATACGCCCg > 2:269486/1‑251 (MQ=255) | ATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGCCGCTTTAGAAGCCGATACCTGAGCTTTCGCCGATTCCAGCGCAGCTCGGGCGCTCTCAGCGGCGGCGCGATCGTCATCCAGCTGTTGCGCAGAAATAGCCCCTCGTTGGGCCAGTGAACGGGAACGCGTATGACGTTTTGCTACGGAGTCCAGTTCTGCCTGGCGTTGATTAACCAGCGACTGTGCGGCACGAGTTTCGCTTTGTCGTTGCTCCAGCAAAGCCTGCGCGGCAGCAACGGCGCTTTGTGCCTCTTTGATTTGCGCGATGGCTTCCAGTCGCTGTTCCTGCAACACGCGAGTATCCATCTTCGCCAGCACTTCACCTTCGCGAACAAACTTGCCTTCTTTCACCAGAATGGTGTCGATACGCCCG > NC_000913/3629979‑3630438 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |