| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,433,900 | C→T | L71L (CTA→TTA) | def → | peptide deformylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,433,900 | 0 | C | T | 84.9% | 65.5 / 4.3 | 34 | L71L (CTA→TTA) | def | peptide deformylase |
| Reads supporting (aligned to +/- strand): ref base C (2/3); new base T (15/13); total (17/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.56e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.84e-01 | |||||||||||
CCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGCTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGGCGAAACAGGCATTGAAGAAGGTTGCCTGTCGATCCCTGAACAACGTGCTTTAGTGCCGCGCGCAGAGA‑AAGTTAAAATTCGCGCCCTTGACCGCGACGGTAAACCATTTGAACTGGAAGCAGACGGTCTGTTAGCCATCTGTATTCAGCATGAGATGGATCACCTGGTCGGCAAACTGTTTATGGATTATCTGTCACCGCTGAAAC > NC_000913/3433667‑3434143 | ccTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATGCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTAGCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCGGGCGGCAACCCAGGTGGATATCCATCAACGTATCATTGTTATGGATGTTTCGGAAAACCGTGACGAACGGTTAGTGTTAATCAATCCa < 1:21306/251‑1 (MQ=255) ctGGAGATTTATGTCAGTTTTGCAAGTGTTCCATATTCCGGACGATCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGAGGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGTTAGTGTTAAGCAATCCAGAGCTTTTAg < 1:2080/248‑1 (MQ=255) ggAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGTTAGTGTTAATCAATCCAGAGCTTTTAGaa < 1:179681/248‑1 (MQ=255) gagaTTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAAAGGTTAGTGTTAATCAATCCAGAGCTTTTAGaaaaa > 2:85868/1‑250 (MQ=255) ccGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGAAGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGCTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGGCGAAACAGGCATTGCAGAAGGTTGCCTGTc > 1:96972/1‑251 (MQ=255) gCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGTTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGGCGAAACAGGCATTGAAGAAGGATGCCTGTCGATCCCTg > 1:153804/1‑251 (MQ=255) cGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGGTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTAGTGATGTTTCGGAAAACCGTGACGAACGGTTAGTGTTAATCAAGCCAGAGCTTTTAGAAAAAAGCGGCGAAACAGGCATTGAAGAAGGTTGCCTGTCGATCCCTGaacaac < 2:159939/250‑1 (MQ=255) gCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCTGATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGTCGAACGGTTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGGCGAAACAGGCATTGAAGAAGGTTGCCTGTCGATCCCTGAACAACGt < 2:82076/251‑1 (MQ=255) tGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGTTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGGCGAAACAGGCATTGAAGAAGGTTGCCTGTCGATCCCTGAACAACGTGCTTTa < 1:270387/250‑1 (MQ=255) ggTAGAAGAAGTGAAGGCAGAAATTCAGCTTTTCGTCGATGATATGTACGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAATCCGTGACGAACTGTTAGTGTTAATCAAACCAGAGCGTTTAGAAAAAAGCGGCGAATCTGGCATTGAAGAAGGTTGCCTGGCGATCGCTTAACAACGTGCTTTAGTGCcgcgcg < 2:199005/251‑1 (MQ=255) tAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGTTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGGCGAAACAGGCATTGAAGAAGGTTGCCTGTCGATCCCTGAACAACGTGCTTTAGTGCCgcgcgc > 1:54517/1‑250 (MQ=255) aaTGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGTTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAGACGGCGAAACAGGAATTGAAGAAGGTTGCCTGTCGATCCCTGAACACCGGGCTTTAGTGCCGCACGCAGAGA‑AAGTTa > 2:104165/1‑250 (MQ=255) aaTGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGTTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGGCGAAACAGGCATTGAAGAAGGTTGCCTGTCGATCCCTGAACAACGTGCTTTAGTGCCGCGCGCAGAGA‑AAGTTa > 1:354889/1‑250 (MQ=255) gaaaagcagctgatcttcgATGATATGGTCGAGACTATGTCAGCAGAAGAAGGTATTGTCCTGGCGGCACCCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGTAAACCGTGACGAACGGTTAGTGTTAATCAATCCAGAGCTATTATAAAAAAGCGGCGAAACAGGCATTGAAGAAGGTAGCCTGTACATCCCTGAACAACGTGCTTTAGTGCCGCGCGCAGAGA‑AAGGTAAAATTcg < 2:117785/235‑1 (MQ=255) cGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGTTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGGCGAAACAGGCATTGAAGAAGGTTGCCTGTCGATCCCTGAACAACGTGCTTTAGTGCCGCGCGCAGAGA‑AAGTTAAAATTCGCGCCCTTGa < 1:380996/251‑1 (MQ=255) gTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGTTAGTGTTaa < 1:228398/132‑1 (MQ=255) gTATCGTCGATGATATGTTAGAGACGATGTACGCAGAAGAAGGTATTAGCCTGGCGGCAACCCAGGATGTTATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGTTAGTGTTaa > 2:228398/1‑132 (MQ=255) ccgtcgATGATAGGGTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAATCCAGGTTGATATCCATAAACGTATCATTGTTATTGAGGTTTCGGAAAACCGTGACGAACGGGTAGGGTTAATCAATCCAGAGCTTTTAGAAGAAAGCGGCGAAACAGGCATTGAAGAAGGTTGCCTGGCGATCCCTGAACAACGTGCGTTAGTGCCGCGCGCAGAGA‑AAGTTAAAATTCGCGCCCTTGACcgc < 2:171485/250‑1 (MQ=255) gtcgATGATATGTTCGAGACGATGTACGCAGAAGAAGGAATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGAGACGAACGGTTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGGAGAAACAGGCATTGAAGAAGGTTGCCTGTCGATCCCTGAACAACGTGCTTTAGTGCCGCACGCAGAGA‑AAGTTAAAATTCGCGCACTTGAccccgc > 2:26978/1‑247 (MQ=255) atgatATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTATCGGAAAACCGTGACTAACGGTTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGGCGAAACAGGCATTGAAGAAGGGTGCCTGTCGATCCCTGAACAACGTGCTTTAGTGCAGCGCGCAGAGA‑AAGTTAAAATTCGCGCCCTTGACCGTGACGGt < 2:50203/251‑1 (MQ=255) gagaCGATGTACGCAGAAGACGGTCTTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGTTAGTGTTAATCAATCCAGAGCTTTTAGAAAAACGCGGCGAAACAGGCATTGTAGACGGTTGCCTGTCGATCCCTGCACAACGTGCTTTAGTGCCGCGCGCAG‑GACAAGTTAAAATTCGGGCCATTGACCGCGACGGTAAACCATTTg > 2:131802/1‑250 (MQ=255) cGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGCTAGTGTTAATCAATCCAGAGCTTTTa < 1:161588/125‑1 (MQ=255) cGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGCTAGTGTTAATCAATCCAGAGCTTTTa > 2:161588/1‑125 (MQ=255) gCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGTTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGACGAAACAGGCATTGAAGAAGGTTGCCTGTCGATCCCTGAAAAACGTGCTTTAGGGCGGGGCGCAGGGA‑AGGTTAAAATTCGCGCCTTTGACCGCGACGGTAAACAATTTGAACTGGAAGc > 1:3456/1‑248 (MQ=255) agaataAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGCTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGGCGAAACAGGCATTGAAGAAGGTTGCCTGTCGATCCCTGAACAACGTGCTTTAGTGCCGCGCGCAGAGA‑AAGTTAAAATTCGCGCCCTTGACCGCGACGGTAAACCATTTGAACTGGAAGCAGACg < 2:100574/251‑1 (MQ=255) tGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGTTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGGCGAAACAGGCATTGAAGAAGGTTGCCTGTCGATCCCTGAACAACGTGCTTTAGTGCCGCGCGCAGAGA‑AAGATAAAATTCGCGCCCTTGACCGCGACGGTAAACCATTTGAACTGGAAGCAGACGGTCTGTTAGcc > 1:209295/1‑250 (MQ=255) cccAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGTTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGGCGAAACAGGCATTGAAGAAGGTTGCCTGTCGATCCCTGAACAACGTGCTTTAGTGCCGCGCGCAGAGA‑AAGTTAAAATTCGCGCCCTTGACCGCGACGGTAAACCATTTGAACTGGAAGCAGACGGTCTGTTAGCCATCTGTATTCAGCAt > 1:282100/1‑251 (MQ=255) tGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGTTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGGCGAAACAGGCATTGAAGAAGGTTGCCTGTCGATCCCTGAACAACGTGCTTTAGTGCCGCGCGCAGAGA‑AAGTTAAAATTCGCGCCCTTGACCGCGACGGTAAACCATTTGAACTGGAAGCAGACGGTCTGTTAGCCATCTGTATTCAGCATGAGATgg > 1:14335/1‑251 (MQ=255) atatCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGTTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGGCGAAACAGGCATTGAAGAAGGTTGCCTGTCGATCCCTGAACAACGTGCTTTAGTGCCGCGCGCAGAGA‑AAGTTAAAATTCGCGCCCTTGACCGCGACGGTAAACCATTTGAACTGGAAGCAGACGGTCTGTTAGCCATCTGTATTCAGCATGAGATGGAt > 1:221596/1‑251 (MQ=255) ttATTGATGTTTCGGAAAACCGTGACGAACGGTTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGGCGAAACAGGCATTGAAGAAGGTTGCCTGTCGATCCCTGAACAACGTGCTTTAGTGCCGCGCGCAGAGA‑AAGTTAAAATTCGCGCCCTTGACCGCGACGGTAAACCATTTGAACTGGAAGCAg > 1:85772/1‑192 (MQ=255) ttATTGAGGTTTCGGAAAACCGTGACGAACGGTTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGGCGAAACAGGCATTGAAGAAGGTTGCCGGTCGATCCCTGAACAACGTGCTTTAGTGCCGCGCGCAGAGA‑AAGTTAAAATTCGCGCCCTTGACCGCGACGGTAAACCATTTGAACTGGAAGCAg < 2:85772/192‑1 (MQ=255) tttCGGAAAACCGTGACGAACGGTTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGGCGAAACAGGCATTGAAGAAGGTTGCCTGTCGATCCCTGAACAACGTGCTTTAGTGCCGCGCGCAGAGA‑AAGTTAAAATTCGCGCCCTTGACCGCGACGGTAAACCATTTGAACTGGAAGCAGACGGTCTGTTAGCCATCTGTATTCAGCATGAGATGGATCACCTGGTCGGCAAACTGTTTATGGATTAt > 1:46854/1‑251 (MQ=255) gTGACGAACGGTTAGTTTTAATCATGCCAGAGCTTTTAGAAAAAAGCTGCGAAACAGGCATGGAAGAAGGTTGCCTGTCGATCCCTTAACAACGTGCTTTAGTGTCGCGCGCAGAGA‑AAGTTAAAATTCGCGCCCTTGACCGCGACGGTAAACCATTTGAACTGTAATCAGACGGTCTGTTATCCATCTGTATTCAGCATGAGAGGGATCACCTGGTCTGCAAACTTTTTATGGATTATCTGTCACCGCTg < 2:39863/251‑1 (MQ=255) cGAACGGCGAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGGCGAAACAGGCATTGAAGAAGGTTGCCTGTCGATCCCTGAACAACGTGCTTTAGTGCCGCGCGCAGAGA‑AAGTTAAAATTCGCGCCCTTGACCGCGACGGTAAACCATTTGAACTGGAAGCAGACGGTCTGTTAGCCATCTGTATTCAGCATGAGATGGATCACCTGGTCGGCAAACTGTTTATGGATTATCTGTCACCGTTGAaac < 2:96972/251‑1 (MQ=255) | CCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAACGGCTAGTGTTAATCAATCCAGAGCTTTTAGAAAAAAGCGGCGAAACAGGCATTGAAGAAGGTTGCCTGTCGATCCCTGAACAACGTGCTTTAGTGCCGCGCGCAGAGA‑AAGTTAAAATTCGCGCCCTTGACCGCGACGGTAAACCATTTGAACTGGAAGCAGACGGTCTGTTAGCCATCTGTATTCAGCATGAGATGGATCACCTGGTCGGCAAACTGTTTATGGATTATCTGTCACCGCTGAAAC > NC_000913/3433667‑3434143 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |