| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,433,665 | C→T | intergenic (‑105/‑25) | smf ← / → def | protein Smf/peptide deformylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,433,665 | 0 | C | T | 89.5% | 84.8 / 3.5 | 38 | intergenic (‑105/‑25) | smf/def | protein Smf/peptide deformylase |
| Reads supporting (aligned to +/- strand): ref base C (2/2); new base T (21/13); total (23/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.73e-01 | |||||||||||
CGCAATGTAAGCCCTGTTTGCTGCAATACAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTCCCTGCCATAAGCAGCCTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAACTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAAC > NC_000913/3433421‑3433897 | cgaaaTGTAAGCCCTGTTTGCTGCAATACAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATCCGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTCCCTGCCATAAGCAGCCTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGa < 1:20440/248‑1 (MQ=255) gCCCTGTTTGCTGAAAACCAAACGCATCACTATACGACTGTCTCGCCTCCCAGTGCGCGATACCGACCATATACTACACGTACAACCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATAGACCATCCTTATCTCCCTGCCATAAGACGCCTTAGCCCTCTTTGCTATTGGTAAGTGATGCTGTCAATAACAGGGGGATGTGTCTAGAGTAGCAGAACTAATCTTTCTAATTCCTGacccaatctct > 2:21306/1‑241 (MQ=255) cTGTTTGCTGCAATACAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTCCCTGCCATAAGCAGCCTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGAACACATCTCTgg > 1:159939/1‑250 (MQ=255) tGTTTGCTGCAATACAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTCCCTGCCATAAGCAGCCTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAACTCATGAACACATCTCTgg > 1:100574/1‑249 (MQ=255) ctgcAATACAACCGCATCAATATGCGACTGTTTTGCCACCAAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTCCCTGCCATAAGCAGCCTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGCGGGGGATTTGTCTCGAATAGAAGAAATAATCTTTCTAATTCCTGAACACATATCTGGAGATTTAt > 2:380996/1‑251 (MQ=255) aaTACAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTCCCTGCCATAAGCAGCCTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGaa > 1:178731/1‑228 (MQ=255) aTACAACCGCAGCAATATGCGTCTGTTTTGCCACCCAGTGAGCGATACGGACCATATCACCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTCCCTGCCATAAGCAGCCTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAg < 1:320486/251‑1 (MQ=255) cAATATGCGACTGTTTTGACACCCAGTGAGCGATACGCACCATATCTGCGCCGTACAAGCTGCTGATATCCATAAATCGCAGCCAAATTTTAGTATCGACCATCCTTAACTCCCTGCCATAAGCAGCCTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAgtgt < 2:32665/251‑1 (MQ=255) atatTCGACTGTTTTGCCACCCAGTGAGCGATGCGGACCATATCATCGCCGTACAAGCTGCTGTTACTCATTAAACGCAGCCAAATTTCTTTATCGACCATCCTTATCTCCCTGCCATAAGCAGCCTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTa < 1:5814/251‑1 (MQ=255) gACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTCCCTGCCATAAGCAGCCTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATAtt > 1:301618/1‑251 (MQ=255) ccAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCAAAATTTCTGTATCGACCATCCTTATCTCCCTGCCATAAGCAGCCTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCt < 1:71958/251‑1 (MQ=255) aCGGGCCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCGCCCTGCCATAAGCAGCCTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTGATGTCAGTTTTGCAAGTGTTACATATGCCGGACGAGCGGCTTCGCAAAGTTg < 1:364583/250‑1 (MQ=255) cGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTCCCTGCCATAAGCAGCCTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCt > 1:284287/1‑251 (MQ=255) gCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTCCCTGCCATAAGCAGCCTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTaga > 1:381932/1‑248 (MQ=255) aGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTCCCTGCCATAAGCAGCCTTAGCAATATTTGCGATTGGTCCGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGATAGAAGAAGTGAATg > 1:352923/1‑251 (MQ=255) aaaCGCAGCCAAATTTATGTATCGACCATCCTTATCTCCCTGCAATAAGCAGCCTTAGCAATATTTGCGATTGGTCAGTGATGCTGTAAATCAGAGGGGGATTTGTCTCGAATAGAAGAAATATTCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCGAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAATTGCTCAACCGATAGAAGCAGTGAATGACGAAATTCAGCGtctc > 2:32752/1‑248 (MQ=255) aaaTTTCTGTATCGACCATCCGTATCCCCCTGCCATAAGCAGCCTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGata < 1:19328/251‑1 (MQ=255) aaTTTCTGTATCGACCATCCTTATCTCCCTGCCATAAGCAGCCTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAACTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGatat < 1:30463/251‑1 (MQ=255) ttttccccTGTCATAAGCAGCCTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGAGTGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAATTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCa < 1:59340/244‑1 (MQ=255) tATCTCCCTGCCATAAGCAGCCTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTAcac > 1:39863/1‑246 (MQ=255) gCCATAAGCAGCCTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGt < 1:256954/249‑1 (MQ=255) ccTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTggcgg > 1:82076/1‑251 (MQ=255) cTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCACTCAGAGGGGGATTTGTATAGAATAGAAGAAATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGGATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTggcgg > 2:270387/1‑250 (MQ=255) tCAGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGCATAGAAGAAATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAACGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATc > 1:40018/1‑250 (MQ=255) aGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGCACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGACGTGAATGCAGAAATTCAGCGTATCGTCGCTGATATGTTCGAGACGATGTACGCAGAAGAAGGGATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAAc > 1:171485/1‑251 (MQ=255) aGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCCGGTTGATATCCATCAAc > 1:199005/1‑251 (MQ=255) gCTGTAAATCAGAGGGCGATTTGTCTAGAATAGAAGAAATAATCTTTCTACTTCCTGAACACAACTCTGGAGATTTATTTCAGTTTTGCAAGTGTTACATTGACCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTTGAAGAAGTGAATGCATAAATTCAGCGTATCGTCGAGGATATGTTCGAGACGATGGACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACTTATc < 2:284287/250‑1 (MQ=255) cAATCAGAGGGGGATTTGTCTAGAATATAAAAAATAATCTGTCTAATTTCTGAACACATCTCTGGAGATTGATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTGCGCTAAGTTGCTAAACCGGTATAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGTAGAATAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGt < 1:313121/250‑1 (MQ=255) tCAGAGGGGGATTTGTCTAGAATAGAAGAAATCATCTTTCTAATTCCGGAACACATCACTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGATTCGCAAAGTTGCTAAACCGGTAGAAGAAGAGAATGCAGACATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGGCTGGCGGCAACGCAGGTTGATATCCATCACCGTATCATTGTTAtt > 1:129219/1‑251 (MQ=255) cAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTg > 1:50203/1‑251 (MQ=255) cAGAGGGGGATGTGTCTAGAATAGAAGAAATAATCTTGCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCTGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTg < 1:66259/251‑1 (MQ=255) agGGGGATTTGTCTAGAATAGCAGAAATAATCTTTCTAATTCATGAACACATCTCTGGAGATATATGTAAGATTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAACGTTGCTAAACCGGTAGAAGAAGTGAATGCAGCAATTCCGAGTCTCGTCGATGATATGTTCGTGACGATGTACGCAGAAGACGGTATTGGCCGGGCGGCACCCCAGGGTGTTATCCATGAACGTATCATTGTTAttagg > 2:329418/1‑247 (MQ=255) agGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATGCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTg < 1:329418/248‑1 (MQ=255) agGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAATTCATGAACACATCTCTGGAGATTTAAGTAAGTTTTGCAAGTGTTACATATTCCGGCCGAGCGTCTTCGCAAAGTTGCTAAACCAGTAGAAGTAGTGAATGCAGAAATTCAGAGTATCGTCCATGAAATGTTCGAGCCGATGTAAGCAGAAGCAGGAACTGGCCTGACGGCAACCCAGGATTATATCCATCAACGTCTCATTGTTAttactg > 2:124458/1‑247 (MQ=255) agaatagaaGAAATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGt > 1:185415/1‑251 (MQ=255) aatagaaGAAATAATCTTTCTAACTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAAt < 2:125745/123‑1 (MQ=255) aatagaaGAAATAATCTTTCTAACTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAAt > 1:125745/1‑123 (MQ=255) aagaaATAATCTTTCTAATTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAAc > 1:188812/1‑251 (MQ=255) | CGCAATGTAAGCCCTGTTTGCTGCAATACAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTCCCTGCCATAAGCAGCCTTAGCAATCTTTGCGATTGGTCAGTGATGCTGTCAATCAGAGGGGGATTTGTCTAGAATAGAAGAAATAATCTTTCTAACTCCTGAACACATCTCTGGAGATTTATGTCAGTTTTGCAAGTGTTACATATTCCGGACGAGCGGCTTCGCAAAGTTGCTAAACCGGTAGAAGAAGTGAATGCAGAAATTCAGCGTATCGTCGATGATATGTTCGAGACGATGTACGCAGAAGAAGGTATTGGCCTGGCGGCAACCCAGGTTGATATCCATCAACGTATCATTGTTATTGATGTTTCGGAAAACCGTGACGAAC > NC_000913/3433421‑3433897 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |