| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,411,689 | G→T | E13* (GAA→TAA) | yhdJ → | DNA adenine methyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,411,689 | 0 | G | T | 88.9% | 43.5 / ‑1.5 | 28 | E13* (GAA→TAA) | yhdJ | DNA adenine methyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (2/1); new base T (12/12); total (14/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.20e-01 | |||||||||||
CCCTGTTGGACATGGTGATGCAATACACCCGTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGT‑CACAAAGGGAGTGACCATGAGAACAGGATGTGAA‑CCGACCCGGTTTGGTAATGAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGAAGTGATTGCAGAGTGCCACCGCGTTCTGAAAAAGCAGGGCAGCATGTACATCATGAACAGTACGGAAAACATGCCCTTTAT > NC_000913/3411452‑3411933 | cccTGTTGGACATGGTGATGCAATACACCCGTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGT‑CACAAAGGGAGTGACCATGAGAACAGGATGTGAA‑CCGACCCGGTTTGGTAATTAAGCTAAGACCat < 1:344187/251‑1 (MQ=255)cccTGTTGGACATGGTGATGCAATACACCCGTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGT‑CACAAAGGGAGTGACCATGAGAACAGGATGTGAA‑CCGACCCGGTTTGGTAATGAAGCTAAGACCat > 1:153412/1‑251 (MQ=255) ggTGATGCAATACACCCGTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGT‑CACAAAGGGAGTGACCATGAGAACAGGATGTGAA‑CCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGa < 1:83443/250‑1 (MQ=255) taaTACACCCTTGGTAACCAGACCCGTTCTGCGCTGTTTATGTGCATCAACCTTGGTACGCTGCGTAAAAAATGGAAAAAATACGGCATGAACTAATTCAGGGTATCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCGTTGTTATAGGTGT‑CACAAAGGGAGTGACCATGATAACAGGATGTGAA‑CCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCtt < 2:341576/249‑1 (MQ=255) cAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGT‑CACAAAGGGAGTGACCATGAGAACAGGATGTGAA‑CCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATcc < 1:76942/251‑1 (MQ=255) cgcTGATGATGTGCATCAACCGTGGTACGCTGAGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGCTAGCTCAAAGCTTGAATCAAACGGCGCTACAAGGCATGGGGAAGCGCCTTTTTTATAGGGGT‑AACAAAGGGAGAGACCATGAGAACAGGATATGAC‑CCGACCCGGATAGGTAATTAAGCTACGACCATTATTAACGGTGAAGCGCTTGCCGACCTTACAAAGATCACAGCCGAAAgagg > 2:223841/1‑248 (MQ=255) aTCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGT‑CACAAAGGGAGTGACCATGAGAACAGGATGTGAA‑CCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTg > 2:80306/1‑251 (MQ=255) ccGTGGTACGCTGCGTAAAAAATGTAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTTT‑CACAAAGGGAGTGACCATGAGAACAGGATGTGAC‑CCGCCCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCTCTTGCCGATCTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGAc < 1:1537/251‑1 (MQ=255) aaaaaaTACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCTTTTTTTATAGGTGT‑CACAAAGGGAGTGACCATGAGAACAGGATGTGAA‑CCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAAtt < 1:80306/251‑1 (MQ=255) ggTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGT‑CACAAAGGGAGTGACCATGAGAACAGGATGTGAA‑CCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGcc > 2:66105/1‑198 (MQ=255) ggTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGT‑CACAAAGGGAGTGACCATGAGAACAGGATGTGAA‑CCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGcc < 1:66105/198‑1 (MQ=255) tAAATGCTTGATTAAAAAGGCGCTACGCGGCATGGGGAAGCGCCTTTTTTATAGGTGT‑CACAAAGGGAGTGACCATGAGAACAGGATGTGAA‑CCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATaa < 1:98495/205‑1 (MQ=255) tAAATGCTTGATTAAAAAGGCGATACTCGGCATGGGGAAGCGCCTTTTTTGTAGGTGT‑AACAAAGGGAGTGACCATGAGAACAGGATGTGAA‑CCGACCAGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGAGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGAGACGATCTGATCTTTGCCGACCCACCATATaa > 2:98495/1‑205 (MQ=255) aaaTGCTTGATTAAAAGGTCGCTGCTCGGCATGGGGAAGCGCCTTTTTAAGAGGAGT‑AAAAAAGGGATGGACCAGGAAAAATGGAT‑TGAAACCGACCCGTTGTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCATGGAAAGAAGAt < 2:61419/250‑1 (MQ=255) ttttGATAAAAAAGGTGCTACTCGGAAGGGGGAAGCGCCTTTTTTATAG‑TGTTAATAAAGGGAGGGACCATGAAAACAGGAGGTGAA‑CCGACCCGGTTTGGTAATGAAGCTAAGACAATTTTTCACGGTGATGCGTTTGCCGAATTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGt < 2:153412/248‑1 (MQ=255) tAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGT‑CACAAAGGGAGTGACCATGAGAACAGGATGTGAA‑CCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGAc > 1:134553/1‑251 (MQ=255) gggAGGCGCTTTTTTAAGAGGTGC‑CACAAAGGGAGTGACCTTGAGAAGAGGTTGGGAA‑CTGACCCGGTTTGGTAATTAAGCTAAGCCCTTTAGTCACGGTGATGCGTTCGCCGAACTAAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGAAGTGATTGCaa < 2:74216/251‑2 (MQ=255) gcCTTTTTTATAGGTGT‑CACAAGGGGAGTGACCATGAGAACAGGATGTGAA‑CCGACCCGGTTTGGTACTTAAGCTAAGACCATTATTCACGGGGCTGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGGCGATCTGATCTTTGCCGACCCACCATATAACATCTGAAACAATTTTGATGGTCTGATCTAAGCCTTGAAAGAAGATCTGTTTATCGATTGGCAGTTTGAAgaatgataaagggtccc > 2:106243/1‑235 (MQ=255) tttAAAGGTGT‑CACAAAGGGAGTGACCATGAGACCAGGATGTGAA‑CCGACCCGGTTTGGTAATTAAGCGACGACCCTTATTCACGGTGATGCGCTTGCAGAACTTAAAAAAATCCCAGCCGAAAGTGGAGATCTGATCTTTGCAGAACCACCATATAACATCGGTAAAAATTTTGATGGTATGATCGAAGCCAGGAAAGAAGAAATGTTTATCGACTGGCTGTTTGAAATAATTGCagagggcaaacgcgt > 2:309775/1‑240 (MQ=255) tataGGTGT‑CACAAAGGGAGTGACCATGCGAACAGGATGTGAA‑CAGACCCGGTTTGGTAATTAAGCTAAGACCATTATTAACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTTTCGACTGGCTGATTGAAGTATTTGGAGAGTGCAACCGCGTTc > 1:268174/1‑251 (MQ=255) aaaGGGAGTGGCCATGAGAACAGGATGTGAA‑CCGACCCGGTTTGATAATGAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTACCGACCCACCATATCACATCGGTAAAAAGTTTGATGTTCTGATCGAAGCCTGGAAAAAAGCTCTGTTTATCGACTGGCTGTTTGAAGTAATTGCAGACTGCCACCGCGTTCTGAAAAAACAgg > 2:149704/1‑251 (MQ=255) aGTGACCATGAGAACAGGATGTGAA‑CCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGAAGTGATTGCAGAGTGCCACCGCGTTCTGAAAAAGCAGGgcagc > 1:209651/1‑250 (MQ=255) cATGATAACGGGATGTGAC‑CCGCCCCGTTTTGGTAATAAAGCAAAGCCCATTATTCTCGGTGATCTGCTTGCCGAACTTAAAAAGAGCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGAAGTGATTGCAGAGTGCCACCGCCTTCTGAAAAAGCAGGGCAGCATGTAca < 1:300727/251‑1 (MQ=255) aTGTGAA‑CCGACCCGGTTTGGTAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGAAGTGATTGAAGCGTGCCACCGCGTTCTGAAAAAGCAGGGCAGCATGTACATCATGAACatt > 1:133754/1‑248 (MQ=255) aCCCGGTTTGGTAATTAAGCAAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGAAGTGATTGCAGAGTGCCACCGCGTTCTGAAAAAGCAGGGCAGCATGTACATCATGAACAGTACGGAAAACAt < 1:366962/251‑1 (MQ=255) tGGTAATTATGCTAAGACCATTATTCACGGTGATGCGCTTACCGAACTTAAAAAGATCCACGCCGAAAATGTCGATCTGATCTTTGCAGAACCACCATATAACATCGGTAAAAATTTTGATGGTATGATCGAAGCCTGGAAAGCAGATCTGTTTATCGACTGGCAGTTTGAAGGGATTGCAGAGTGCCATCGCGTTCTGAAAAAGCAGGGCAGCATTTACATCATGAAACGAACAGAAAACATgaccgtt > 2:333083/1‑244 (MQ=255) tAATTAAGCTAAGACCATTATTCACGGTGATGCTCTTGCCGATCTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGTAGTTATTGCAGAGTGCCACCGCGTTCTGAACAAGCAGGGCAGCATGTACATCATGAACAGTACGGATACCATGCCCttttt > 2:199889/1‑247 (MQ=255) tAATTAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGAAGTGATTGCAGAGTGCCACCGCGTTCTGAAAAAGCAGGGCAGCATGTACATCATGAACAGTACGGAAAACATGCCCTTTAt < 1:199889/249‑1 (MQ=255) | CCCTGTTGGACATGGTGATGCAATACACCCGTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGT‑CACAAAGGGAGTGACCATGAGAACAGGATGTGAA‑CCGACCCGGTTTGGTAATGAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTGATCTTTGCCGACCCACCATATAACATCGGTAAAAATTTTGATGGTCTGATCGAAGCCTGGAAAGAAGATCTGTTTATCGACTGGCTGTTTGAAGTGATTGCAGAGTGCCACCGCGTTCTGAAAAAGCAGGGCAGCATGTACATCATGAACAGTACGGAAAACATGCCCTTTAT > NC_000913/3411452‑3411933 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |