| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,256,301 | G→A | S117S (TCC→TCT) | cyuA ← | putative L‑cysteine desulfidase CyuA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,256,301 | 0 | G | A | 93.3% | 73.1 / ‑2.1 | 30 | S117S (TCC→TCT) | cyuA | putative L‑cysteine desulfidase CyuA |
| Reads supporting (aligned to +/- strand): ref base G (0/2); new base A (12/16); total (12/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.03e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.92e-01 | |||||||||||
CGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCGTCTCGATATGCACAATGTTGGTATGCCCGCCGACGATGGTGACACACGCCCACTTCTCACCGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACGGAGACTTTCCCCGCCGCCAGCAGTGCTTTGGCATCGGCAATTGCCTGCGCTGTTGCGTCTTTCAGCACTTCCAGCCCGGCGTTGGCATTTCCACCTAACGCCCCCAGCGCCGCCGCAATCGGCAGCCCCACCATTCCCGTGCCGGGAACGGTGACGCCCAGACCGTTCTTCATCAGATTTGGCGAAACCCAGGCTTCTACACGTTCA > NC_000913/3256055‑3256508 | cctcaacgggacgccatttagaatcTTCAGGTTCTCATTCAGCGTCCGTTGTG‑AAATCAACGTCAGTGGAGACTCTTGCTCGCCCTCTTCCTCACACGCTTCCTGGGTAATCACCTCCCCATCGTGCGTCTTGATATGCACAATGTTGGTATGCCCGCCGACTATGGTGACACACGCCCACTTCTCACCGTTCCATACTTTGG‑CGCGTGAGAAGAGGATTTCATCACAAGGTTCCTGGATCTTAACAgaga < 2:323537/227‑1 (MQ=255) cGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCGTCTCGATATGCACAATGTTGGTATGCCCGCCGACGATGGTGACACACGCCCACTTCTCACCGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACAGAGACTTTcc < 1:179620/251‑1 (MQ=255) tCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGCCTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCGTCTCGATATGCACAATGTTGGTATGCCCGCCGACGATGGTGACACACGCCCACTTCTCACAGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACAGAGACTTTCCCcgccgc > 1:349068/1‑251 (MQ=255) aTTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCGTCTCGATATGCACAATGTTGGTATGCCCGCCGACGATGGTGACACACGCCCACTTCTCACCGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACAGAGACTTTCCCCgccgccc > 1:124025/1‑250 (MQ=255) cAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTTTTGCTCGCCCTCTGCCACCCACGCCTGCTGGGTAAACACCCCCCCACCGTGCGTCTCGATATGCACAATGTTGGTATGCCCGCCGACGATGGTGACACACGCCCACTTCTCACCGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACAGAGACTTTCCCCGCCGCCAGCAGTGCTTTgg < 1:83954/251‑1 (MQ=255) gtaTCTCAGCCCGCGTC‑GTTCTGGAAAGAACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACCCCTGCTGGGTAAACACCACACCATCGTGCGTCCCGATATGCAACATGTTGGTATGCACACCGCCGATGGTGACACACGCCCACTTCTCACCGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCACAGTTACTGAATCTTAACAGAGACTTTCCACGCCGCCAGCAGGACTTTGGc > 2:218944/3‑250 (MQ=255) ggATCTCAGCCCGCTTC‑GTTCCGGAAAGCACCGTCCGCGGAGTCTCTTGCTCGCCTCCTGCCGCACCCCCCTGGTGGGGAAACCCCACCCCAACGGGCTTCACAATTGGCACAGTGTGGGTATGCCCGCCGACGATGGTGACACACGCCCCCTTCTCACCGGTCCAGACTTTGG‑CGCGGGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACAGAGACTTGCCCCGCCGCCAGCAGTGCTTTGGCa < 2:383646/251‑1 (MQ=255) cctcAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGATACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCGTCTCGATATGCACAATGTGGGTATGCCCGCCGACGATGGTGACACACGCCCACTTCTCACCGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACAGAGACTTTCCCCGCCGCCAGCAGTGCTTTGGCATCg < 1:309243/250‑1 (MQ=255) ctcAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCGTCTCGATATGCACAATGTTGGTATGCCCGCCGACGATGGTGACACACGCCCACTTCTCACCGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACAGAGACTTTCCCCGCCGCCAGCAGTGCTTTGGCATCgg > 1:165763/1‑251 (MQ=255) cagccagcGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCGTCTCGATATGCACAATGTTGGTATGCCCGCCGACGATGGTGACACACGCCCACTTCTCACCGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACAGAGACTTTCCCCGCCGCCAGCAGTGCTTTGGCATCGGc > 1:45622/1‑250 (MQ=255) ccagcGTG‑GTTCTGGAAAGCACCGCCAGCGGAGCCTCTTGCTCGCCCTCGGCCACACACGCCTGCTGGGTAAACCCCCCCCCATCGTGCGTCTCGATATGCACAATGTTGGTATGCCCGCCGACGATGGTGACACACGCCCACTTCTCACCGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACGGAGACTTTCCCCGCCGCCAGCAGTGCTTTGGCATCGGCAAtt < 1:115011/251‑1 (MQ=255) ccagcGTC‑GATCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCGTCTCGATATGCACACTGTTGGTATGCCCGCCGACGATGGTGACACACGCCCACTTCTCACCGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACAGAGACTTTCCCCCCCCCCAGCAGTGCTTTGGCATCGGCAAtt > 2:327474/1‑251 (MQ=255) gataCTCTTGCGCGCCCTCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCGTCTCGATATGCACAATGTTGGTATGCCCGCCGACGATGGTGACACACGCCCACTTCTCACCGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACAGAGACTTTCCCCGCCGCCAGCAGTGCTTTGGCATCGGCAATTGCCTGCGCTGTTGCGTCTTTCAGCACTTcc < 1:384024/248‑1 (MQ=255) gaCTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCGTCTCGATATGCACAATGTTGGTATGCCCGCCGACGATGGTGACACACGCCCACTTCTCACCGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACAGAGACTTTCCCCGCCGCCAGCAGTGCTTTGGCATCGGCAATTGCCTGCGCTGTTGCGTCTTTCAGCACTTcc > 1:225288/1‑249 (MQ=255) cacGCCCTCGGCCCCACCCGCCTGCTGGGTAAACACCACTCCATCGTGCTTCTCGATATGCACAATGTTGGTATGCCCGCCGACGATGGTGACACACGCCCACTTCTCACCGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACAGAGACTTTCCCCGCCGCCAGCAGTGCTTTGGCATCGGCAATTGCCTGCGCTGTTGCGTCTTTCAGCACTTCCAGCCCGGCGt < 1:100407/249‑1 (MQ=255) cccctGCCACACACGCCTGCGTGTTAAACCCCACACCAGCGTGCGTCTCTATATGCAAAATGTTGGTATGCCCGCCGACGATGGTGACACACGCCCACTTCTCACCGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACAGAGATTTTCCCCGCCGCCAGCAGTGCTTTGGCATCGGCAATTGCCTGCGCTGTTGCGTCTTTCAGCACTTCCAGCCCGGCGTTGGCa < 1:147131/248‑1 (MQ=255) ccTGCTGGGTAAACACCACCCCATCGTGCGTCTCGATATGCACAATGTTGGTATGCCCGCCGACGATGGTGACACACGCCCACTTCTCACCTTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCAGCGCAAGGTTCCTGGATCTTAACAGAGACTTTCCCCGCCGCCAGCAGTGCTTTGGCATCGGCAATTGCCTGCGCTGTTGCGTCTTTCAGCACTTCCAGCCCGGCGTTGGCATTTCCACCTAACGcc < 1:22925/251‑1 (MQ=255) ctgGGTAAACACCACACCATCGTGCGTCTCGATATGCACAATGTTGGTATGCCCGCCGACGATGGTGACACACGCCCACTTCTCACCGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACAGAGACTTTCCCCGCCGCCAGCAGTGCTTTGGCATCGGCAATTGCCTGCGCTGTTGCGTCTTTCAGCACTTCCAGCCCGGCGTTGGCATTTCCACCTAACGccccc > 1:362491/1‑250 (MQ=255) aaaccaccactccatcgggctgcacGATATGCACAAGGTTGGTAGGCCCGCCGACGATGGGGACACACGCCCACTTCCCACCGTCCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCAGCGCAAGGTTCCTGGATCTTAACAGAGCCTTTCCCCGCCGCCAGCAGTGCTTTGGCATCGGCAATTGCCTGCGCTGTTGCGTCTTTCAGCACTTCCAGCCCGGCGTTGGCATTTCCACCTAACGCCCCCAGcgcc < 1:318580/227‑1 (MQ=255) acacctccccaTCGTGCGTCTCGATATGCACAATGTTGGTAGGCCCGCCGACGATGGTGACACACGCCCACTTCTCCCCGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACAGAGACTTTCCCCGCCGCCAGCAGTGCTTTGGCATCGGCAATTGCCTGCGCTGTTGCGTCTTTCAGCACTTCCAGCCCGGCGTTGGCATTTCCACCTAACGCCCCCAGcgccgcc < 1:207110/243‑1 (MQ=255) cacccccccagcGTGCGTCTCGTTATGCACAATGTGGGTAGGCCCGCCGACGATGGTGCCACACGCCCACTGCTCACCGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCACCGCAAGGTTCCTGGATCTTAACAGAGACTTTCCCCGCCGCCAGCAGTGCTTTGGCATCGGCAATTGCCTGCGCTGTTGCGTCTTTCAGCACTTCCAGCCCGGCGTTGGCATTTCCACCTAACGCCCCCAGcgccgccg < 1:141892/240‑1 (MQ=255) caTCGTGCGTCTCGATATGCACAATGTTGGTATGCCCGCCGACGATGGTGACACACGCCCACTTCTCACCGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACAGAGACTTTCCCCGCCGCCAGCAGTGCTTTGGCATCGGCAATTGCCTGCGCTGTTGCGTCTTTCAGCACTTCCAGCCCGGCGTTGGCATTTCCACCTAACGCCCCCAGCGCCGCCGCAATCGGc > 1:128450/1‑251 (MQ=255) gtttgttatccccGCCGACGATGGTGACACCCCCCCACTCCTCACCTTTCCAGCCTTTGG‑CGCGGGAGAAGAGGATTTCACCGCAAGGTTCCTGGATCTTAACAGAGACTTTCCCCGCCGCCAGCAGTGCTTTGGCATCGGCAATTGCCTGCGCTGTTGCGTCTTTCAGCACTTCCAGCCCGGCGTTGGCATTTCCACCTAACGCCCCCAGCGCCGCCGCAATCGGCAGCCCCACCATTCCCGTGCCggg < 1:249391/240‑1 (MQ=255) atgcccccccaggaTGGTGACCCCCCCCCACTCCCCCCCGTTCCAGTCTTTGG‑CGCGTGATAAGAGTATTTCATCCCAGGGTTCCTGGATTTAAACAGAGCCTTTCCCCGCCGCCAGCAGTGCTTTGGCACCGGCAATGGCCTGCGCTGTTGCGTCTTTCAGCCCTTCCAGCCCGGCGTTGGCATTTCCACCTAACGCCCCCAGCGCCGCCGCAATCGGCAGCCCCACCATTCCCGTGCCGGGAACGGTg < 2:165763/238‑1 (MQ=255) gccccGACGACGGTGGGGACACACGCCCTCTTCTCACCGTTCCAGACGTTGG‑CGCGGGAGAAGAGGATTCCATCGCAAGGGTCCTGGATCTAAACAGAGCCTTTCCCCGCCGCCAGCAGTGCTTTGGCATCGGCAATTGCCTGCGCTGTTGCGTCTTTCAGCACTTCCAGCCCGGCGTTGGCATTTCCACCTAACGCCCCCAGCGCCGCCGCAATCGGCAGCCCCACCATTCCCGTGCCGGGAACGGTGAc < 1:249406/249‑1 (MQ=255) cccctagtgtggtacccctcGCCCCCTCCTCACCGT‑CCAGAGTTTGGGCGCGTGAGAAGAGGATTCCATAGCAAGGTTCCGGGTTCATAACGGAGACTTTCCCCGCCGCCAGCAGTGCTTGGGCATCGGCAATTGCCTGCGCTGTTGCGTCTTTCAGCACTTCCAGCCCGGCGTTGGCATTTCCCCCTAACGCCCCCAGCGCCGCCGCAATCGGCAGCCCCACCATTCCCGTGCCGGGAACGGTGACGccc < 2:191776/232‑1 (MQ=255) gaTGGTGACACACGCCCACTTCTCACCGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCATGGATCTTAACAGAGACTTTCCCCGCCGCCAGAAGTGCTTTGGCATCGGCAATTGCCTGCGCTGTTGCGTCTTTCAGCACTTCCAGCCCGGCGTTCGCATTTCCAACTAACGCCCCCAGCGCCGCCGCACTCGGCAGCCCCACCATTCCCGTGCCGGGAACGGAGCCGCCAAGACCgc > 1:252185/1‑250 (MQ=255) cACTTCTCACCGTTCCAGACTTGGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCCGGGATCTTAACAGAGACTTGCCCCGCCGCCAGCAGTGCTTTGGCATCGGCAATTGCCTGCGCTGTTGCGTCTTTCAGCACTTCCAGCCCGGCGTTGGCATTTCCACCTAACGCCCCCAGCGCCGCCGCAATCGGCAGCCCCACCATTCCCGTGCCGGGAACGGTGACGCCCAGACCGTTCTTCATCAGATTTgg < 1:218944/251‑1 (MQ=255) ccAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACAGAGACTTTCCCCGCCGCCAGCAGTGCTTTGGCATCGGCAATTGCCTGCGCTGTTGCGTCTTTCAGCACTTCCAGCCCGGCGTTGGCATTTCCACCTAACGCCCCCAGCGCCGCCGCAATCGGCAGCCCCACCATTCCCGTGACGGGAACGGTGACGCCCAGACCGTTCTTCATCAGATTTGGCGAAACCCAGGCtt > 1:11429/1‑251 (MQ=255) gcgTGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACAGAGACTTTCCCCGCCGCCAGCAGTGCTTTGGCATCGGCAATTGCCTGCGCTGTTGCGTCTTTCAGCACTTCCAGCCCGGCGTTGGCATTTCCACCTAACGCCCCCACCGCCGCCGCAATCGGCAGCCCCACCATTCCCGTGCCGGCAACGGCGACGCCCAGACCGATCTTCCTCAGATTTGCAGAAACCCAGGCTTCTacacttaca > 2:271787/1‑245 (MQ=255) | CGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCGTCTCGATATGCACAATGTTGGTATGCCCGCCGACGATGGTGACACACGCCCACTTCTCACCGTTCCAGACTTTGG‑CGCGTGAGAAGAGGATTTCATCGCAAGGTTCCTGGATCTTAACGGAGACTTTCCCCGCCGCCAGCAGTGCTTTGGCATCGGCAATTGCCTGCGCTGTTGCGTCTTTCAGCACTTCCAGCCCGGCGTTGGCATTTCCACCTAACGCCCCCAGCGCCGCCGCAATCGGCAGCCCCACCATTCCCGTGCCGGGAACGGTGACGCCCAGACCGTTCTTCATCAGATTTGGCGAAACCCAGGCTTCTACACGTTCA > NC_000913/3256055‑3256508 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |