| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,916,216 | G→A | G387E (GGG→GAG) | barA → | sensor histidine kinase BarA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,916,216 | 0 | G | A | 96.7% | 83.0 / ‑4.5 | 30 | G387E (GGG→GAG) | barA | sensor histidine kinase BarA |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (19/10); total (20/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 | |||||||||||
GCTTTACCCGCCTGACGCTGAAAACAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACATTCTTCTCACGATAAAGGGTTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCGGGATACCGGCATTGGTATTCCTGAACGCGATCAATCGCGCTTATTCCAGGCCTTC > NC_000913/2915994‑2916460 | gCTTTACCCGCCTGACGCTGAAAACAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACATTCTTCTCACGATAAAGAGTTAGAACTGACGCTCAATATTAAAAGc > 1:304427/1‑251 (MQ=255) caccaaacccgcgcGATTACCTGAATACGATTAAACGTGCTGCAAATAATTTGCTGGCTATTATTAATGATGTTCTCGACTACTCGAAACTGGAAGCAGGTAAGCTGATTCTGTAAAGTTTTCCATTCCCACTACGCAGCACGCTGGATGTAGTCGTTACTCTGCTGGCACATTCTTCTCCCGATAAAGAGTTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCTg < 2:315428/241‑1 (MQ=255) cAGCGCGAACACCTGAATCCGATTGAAAGTTCGGCAAATAATTTGCTGGCAATTATTAATGCTGTTCTCGACTTCTCGACACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGATATTCTGCAGGCACATTCTTCTAAAGATAACGAGTTAGAACTGACGATCAATTTTAAAAGCGACCTGCATGATAAAGTACTAGACTACCCGCTGCGATTAcc > 2:316848/1‑250 (MQ=255) tGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACATTCTTCTCACGATAAAGAGTTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCtggtg < 1:16612/250‑1 (MQ=255) aaCGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAATCTGATTCTGGAAAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACATTCTTCTCACACTAAAGAGTTCGAACTGACGCTAAATATTAAAAGCGACGCGCATGATAACGTGATCGGCGAACCGCAGAGATTACAGCAACGCATCACTAACCTGGTgggg > 2:338453/1‑251 (MQ=255) gTTCGGCAAATAATTTGCTGGCAATTATTGATGATGTTCTCGACTTCTCGAAAATGGTAACAGGAAAGCTGATTCTGGAAAGTATTCCGTTACCACTAGGCAGCACGCTAGATGAAGTCGTTACTCTGCTGGCACCTGCTTCTCACGCTAAAGGGTTAGAACTGACGCTCAATATTAACCGCGACTTGCCTGATACCGTGAGCGGCGCCCAGATGCTGTTACAGCAAATCATCAATAACCTAGTgggtaa > 2:91333/1‑247 (MQ=255) ggCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACATTCTTCTCACGATAAAGAGTTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCa > 1:193782/1‑250 (MQ=255) taatTTTCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGAAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCAAATTCTTCTCACGATAAAGAGTTAGAACTGACGCTCAATATTATAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGAATATCTTCACTAACCTGGTGGGGAATGCAATTaact > 1:35095/1‑249 (MQ=255) tattaATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACATTCTTCTCACGATAAAGAGTTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGc > 1:24008/1‑250 (MQ=255) tttatgatgTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGGTACTCTGCTGGCACATTCTTCTCACGAAACAGAGTTAGCACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACACGCTGCGATTACAGCAAATCATCACTCACTTGGAGGTGAACGCCATTAAAttagccatgaaggggcac > 2:265037/4‑235 (MQ=255) ctcGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACATTCTTCTCACGATAAAGAGTTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCt > 1:67241/1‑251 (MQ=255) tctcGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACATTCTTCTCACGATAAAGAGTTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATGCACCGAGAATGGCAACATTGAGATTCTGGTAg < 1:70954/249‑1 (MQ=255) gAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACATTCTTCTCACGATAAAGAGTTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATGACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACCAACATGGTGGGGCATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAAc > 1:343530/1‑251 (MQ=255) aCTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACATTCTTCTCACGATAAAGAGTTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTg > 1:266347/1‑251 (MQ=255) tGGACGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCACTACGCAGCACGATGGATGAAGTCGTTACTCTGCTGGAACATTCTTCTCACGATAACGAGTTAGAACTGAAGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCTGCGACACGATGCGATTACAGCAAATCATCACTACCCTGGTGGGGAGTGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTg > 1:346444/1‑249 (MQ=255) tGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACATTCTTCTCACGATAAAGAGTTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGAt > 2:4523/1‑148 (MQ=255) tGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACATTCTTCTCACGATAAAGAGTTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGAt < 1:4523/148‑1 (MQ=255) cAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACATTCTTCTCACGATAAAGAGTTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCTGAGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGAGATGAGt > 2:217651/1‑251 (MQ=255) cTGGAAAGTCTTCCATTCCCACTAAGCAGCACGCTGGATGAAGTAGTTAATCTGCTGGCACATTCTTCTCACGCTAAAGAGTTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGAACCGCTGCGATTACAGCAAATCATCACTAACCTGATGGGGAATGCAATTAAATTCACCGAGAATGGCAGAATTGTTATTCTGGTAGAAACACGGGCGCTGAGAAATCACAAAGTGc > 2:264801/1‑250 (MQ=255) ggAAAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACATTCTTCTCACGATAAAGAGTTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCa < 1:226145/249‑1 (MQ=255) tATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGTCACATTCTTCTCACGATAAAGAGTTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGCACCGCTGCGCTTACAGCACATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACCTTGATATTCTGGAAGAAAAACGTGCGCTGAGTCAGACCAAAGTGCAGATTGa > 2:121588/1‑249 (MQ=255) ttccattccCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACATTCTTCTCACGATAAAGAGTTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCt < 1:84908/130‑1 (MQ=255) ttccattccCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACATTCTTCTCACGATAAAGAGTTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCt > 2:84908/1‑130 (MQ=255) ccaaCTACGCAGCACGCTTGATTAAGTCGTTACTCTGCTGGCTCATTCATCTCACGATAAAGAATTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCTTCTATTACAGCAAATCATCACTAATCTGGTGGGGAATGCAATTAAATTCACCGTGAATAGCAACATTGATATTCTTGTATAAAAACGTGCGCTGAGTCATACCAAAGTGCAGATTGAAGTGCAGATTc < 2:111785/248‑1 (MQ=255) gcagcaCGCTGGATGAAGTCGTTACTCTGCTGGCACATTCTTCTCACGATAAAGAGTTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCGGGATAcc > 1:63029/1‑251 (MQ=255) aggATGAAGTCGTTACTCTGCTGGCACATTCTTCTCACGATAAAGAGTTAGAGCTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCGGGATACCGGCATTGGt < 1:4005/250‑1 (MQ=255) aCTCTGCTGGCACATTCTTCTCACGATAAAGAGTTAGAACTGACGCTCACTATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTCACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGCTTGAAGTGCAGATTCGGGATACAGGCATTGGTATTCCGGAAcgcgt > 2:384853/1‑250 (MQ=255) gctgGCACATTCTTCTCACGATAAAGAGTTAGAACTGACGCCCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCGGGATACCGGCATTGGTATTCCTGAACGCGATCa < 2:346444/249‑1 (MQ=255) cGATAAAGAGTTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCGGGATACCGGCATTGGTATTCCTGAACGCGATCAATCGCGCTTATTCCAGGCCt < 1:217651/251‑1 (MQ=255) aTAAAGAGTTAGAACTGAAGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCGGGATACCGGCATTGGTATTCCTGAACGCGATCAATCGCGCTTATTCCAGGCCTTc > 1:90596/1‑251 (MQ=255) | GCTTTACCCGCCTGACGCTGAAAACAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACATTCTTCTCACGATAAAGGGTTAGAACTGACGCTCAATATTAAAAGCGACGTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCGGGATACCGGCATTGGTATTCCTGAACGCGATCAATCGCGCTTATTCCAGGCCTTC > NC_000913/2915994‑2916460 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |