| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,894,839 | C→T | intergenic (+68/+80) | ygcP → / ← ygcQ | putative anti‑terminator regulatory protein/putative flavoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,894,839 | 0 | C | T | 86.1% | 73.4 / 4.1 | 37 | intergenic (+68/+80) | ygcP/ygcQ | putative anti‑terminator regulatory protein/putative flavoprotein |
| Reads supporting (aligned to +/- strand): ref base C (3/2); new base T (18/13); total (21/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.23e-01 | |||||||||||
AGGCTGTATGCCCAAAGTGCTGGGCTGGGTGACAGAGAAAATCCGCCAACCGCTGATTGCCGGTGGGCTGGTGTGCGATGAAGAAGATGCGCGTAATGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAATTACTTTGACGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCAGTCATCAACCACGCCAACATCTGCCTGTGAAAATACCGCAGCGCTGGCGTCATGATTAATCGCCACCACAAACTTGCTATTGCGTACGCCCGCC > NC_000913/2894600‑2895066 | aGGCTGTATGCCCAAAGTGCTGGGCTGGGTGACAGAGAAAATCCGCCAACCGCTGATTGCCGGTGGGCTGGTGTGCGATGAAGAAGATGCGCGTAATGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAATTACTTTGACGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACg > 1:156019/1‑251 (MQ=255) gctgggctggGTGACAGAGAAAATCCGCCAACCGCTGATTGCCGGTGGGCTGGTGTGCGATGCAGAAGATGCGCGTAATGCGATTAACGCGGGTGTCGTGTCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAATTACTTTGACGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATc > 1:331878/1‑249 (MQ=255) agagAAAATCCGCCAACCGCTGATTGCCGGTGGGCTGGTGTGCGATGAAGAAGATGCGCGTAATGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAATTACTTTGACGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTcccc > 1:190178/1‑250 (MQ=255) aaaTCCGCCAACCGCTGATTGCCGGTGGGCTGGTGTGCGATGAAGAAGATGCGCGTAATGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAATTACTTTGACGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCa < 1:204334/251‑1 (MQ=255) cGCCAACCGCTGATTGCCGGTGGGCTGGTGTGCGATGAAGAAGATGCGCGTAATGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAATTACTTTGACGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAAcc > 1:314000/1‑251 (MQ=255) gCTGATTGCCGGTGGGCTGGTGTTCGATGAAGAAGATGCGCGTAATGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAGAAATTACTTTGACGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGc > 1:141028/1‑249 (MQ=255) ggTGGGCGGGTGTGCGATGAAGAATATGCGCATAATGCGATTAACGGGGGTGATGTGCCGTTTTCCCCCACAAAACCCGGTGTCTGGACGTTAGCGAAAAAATTTCTTTGTCGGAATAATCGTAACCAATGG‑AATTTGGTTGGATTTGTAGGCGTCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCg < 2:294930/250‑1 (MQ=255) gTGGGCTAGTGTGCGAAGAAGTAGATGCGCGTACTGCGATTACCGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGATAGCGAAAAAATTACTTTGCCGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGACCTACAATTCCACAGGCCAGAACCGTCGACAGGAACATCCgtc > 2:122496/1‑249 (MQ=255) cgaagaTGCGCGTAATGCGATTAACGCGGGTGTCGTGGAGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAATTACTTTGACGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGCCGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGTTCATCCGGCACCAAGTTATTGGCAATCt > 2:58260/2‑251 (MQ=255) gcgcGTAATGCGATTAACGCGGGTGTCGTGTCGTTTTCCACCACGAATCCCGGGTTCTGGACGTTAGCGAAAAAATTACTTTGACGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGa < 1:127120/250‑1 (MQ=255) gcgcGTAATGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAACAAATTACTTTGACGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGa > 1:346125/1‑250 (MQ=255) cgcgGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAATTACTTTGACGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGcc > 1:53978/1‑251 (MQ=255) cgcgGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAATTACTTTGACGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACAAGTGcc > 1:29203/1‑251 (MQ=255) gtCGTGGCGTTTTCCCGCAGGAATACAGGGGTCGGGACGTTAGCGAAAAAATTACTTTGACGGGATAATCTTAACCAATTG‑AATTTGGTGTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCTTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGca < 1:171008/251‑1 (MQ=255) gtCGAGGCGCTTCCCACCACTAAACCCGGGGTCTGGATTTAAGCGAAAAATTTACTGTGACGGTATAAACGTACCCAATTT‑AATTTGTTTTGATTGGTATGCCGCACGCCACATCCGACATTCCGCGGCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAATTTCCCAGGCCAGAACCGTAGGCAGGATCACCCGGCAACACGTTATTGGCAAGCTGCGTTCATGTGTGTCACCAGTGCCTCCatca < 2:47858/251‑4 (MQ=255) tttCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAATTACTTTGACGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTcc > 1:93261/1‑250 (MQ=255) cccaccccaaatacctggtgcTGGACGTTAGCAAAAAGATTCCTTTGACGGGAAAATCGTA‑CCCATTGTAATTTTGGTTGATTTGCAGGCCGCACGCCAAATCCAACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTTCCCAGGCCAGAACCGTAGGAAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCGCCCCGTTCCAGt < 2:55764/231‑1 (MQ=255) aaTACCGGGGTCTGGACGTTAGCGAAAAAATTACTTTGACGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCAGTCATCAACCa < 1:347890/251‑1 (MQ=255) attccGGGGGCTGGACGTTAGCGAAAAAATTACTTTGACGGGATAATCGTAACCAAGTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCAGTCATCAACCAc < 1:275207/248‑1 (MQ=255) aTACCGGGGTCTGGACTTTAACGAAAAAATTGCTTTGCCGGGTTAACCGTAACCAATTG‑AATTTGGTTTGATTGTTTGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATTAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATCGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCTGTCATCAACCAc < 2:156019/251‑1 (MQ=255) accgggtgttggcctggagggAAAAAATTTCTTGGCGGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCAGTCATCAACCACg < 2:178740/230‑1 (MQ=255) tGGACGTTAGCGAACAAATTACTTTGACGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTAGCAATCTGCGTGACTGTTTTTCAACATTGCCTCCAGCACCACTTTCCAGTCATCAACCACGCCAACATc > 2:166385/1‑249 (MQ=255) aCGTTAGCGAAAAAATTACTTTGACGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCAGTCATCAACCACGCCAACATCTGCCt < 1:276741/251‑1 (MQ=255) gacaaaaaaaTTTCTTTGACGGGAACATTGTACCCAATTG‑ATTTTTTTGTTCTGTGTAGCCCGCTCGCCTCATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTAGCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGACACCAGTGCCTCCAGCACCACTTTCCAGTCATCAACCACGCCAACATCTGCCTGTGaa < 2:93261/247‑1 (MQ=255) gCGAAAAAATTACTTTGACGGGATAATCGCAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCAGTCATCAACCACGCCAACATCTGCCTGTGaa > 1:267750/1‑250 (MQ=255) gAAAAAATTACTTTGACGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCAGTCATCAACCACGCCAACATCTGCCTGTGAAAAt > 1:269162/1‑251 (MQ=255) aaaaaaaTTACTTTGACGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCAGTCATCAACCACGCCAACCTCTGCCTGTGAAAAt < 1:166385/250‑1 (MQ=255) aCGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCa < 1:114207/180‑1 (MQ=255) aCGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGAAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCa > 2:114207/1‑180 (MQ=255) ggATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCAGTCATCAACCACGCCAACATc > 1:108307/1‑220 (MQ=255) aTCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCAGTCATCAACCACGCCAACATCTGCCTGTGAAAATACCGCAGCGCTGGCGTCATGAtt > 1:189610/1‑251 (MQ=255) ccGTAACCATTTG‑TAGTTGGTTTGGTTTTTAGGCCGCACGCCTCTTCCGAAATGCAGCGTCTGATGCTACGCTTGACGCTTCTTATCAGGCCGACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAAGGTTTGTCACCAGTGCCTCCATCACCACTTTCCAGTCATCAACCATGCCATCATCTGCCTGTGAAAATACCGCAGCGCTGGCGTCATGATTa < 2:249315/250‑1 (MQ=255) tAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCCGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCAGTCATCAACCACGCCAACATCTGCCTGGGAAAATACCGCAGCGCTGGCGTCATGCTTacac > 2:37756/1‑248 (MQ=255) gATTTGTAGGCCGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGATATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCAGTCATCAACCACGCCAACATCTGCCTGTGAAAATACCGCAGCGCTGGCGTCATGATTAATCGCCACCAAAAACTTGCTAtt > 1:302541/1‑251 (MQ=255) ttggtggCCCCACGCCACATCCGACAGTCAGCGTCTGATGCGCCGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCTAGAACCGGAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCAGTCATCAACCACGCTAACATCTGCCTGTGAAAATACCGCAGCGCTGGCGTCATGATTAATCGCCACCACAAACTTGCTATTGc < 2:267750/245‑1 (MQ=255) cGCACGCCACATCCGACATTCAGCGTCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACACGTCCCCAGGACAGAACCGTAGGCCGGATCATCCGGCCACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCAGTCATCAACCACGCCACCATCTGCCTGTGAAAATACCGCAGCGCTGGCGTCATGATTAATCGCCACCAGAAACTTGCTATTGCGTAcgcc > 1:318707/1‑249 (MQ=255) cACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCAGTCATCAACCACGCCAACATCTGCCTGTGAAAATACCGCAGCGCTGGCGTCATGATTAATCGCCACCACAAACTTGCTATTGCGTAcgcccgcc > 1:343308/1‑251 (MQ=255) | AGGCTGTATGCCCAAAGTGCTGGGCTGGGTGACAGAGAAAATCCGCCAACCGCTGATTGCCGGTGGGCTGGTGTGCGATGAAGAAGATGCGCGTAATGCGATTAACGCGGGTGTCGTGGCGCTTTCCACCACGAATACCGGGGTCTGGACGTTAGCGAAAAAATTACTTTGACGGGATAATCGTAACCAATTG‑AATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCAGTCATCAACCACGCCAACATCTGCCTGTGAAAATACCGCAGCGCTGGCGTCATGATTAATCGCCACCACAAACTTGCTATTGCGTACGCCCGCC > NC_000913/2894600‑2895066 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |