| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,883,115 | G→A | P342S (CCT→TCT) | casA ← | type I‑E CRISPR system Cascade subunit CasA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,883,115 | 0 | G | A | 90.0% | 45.9 / ‑3.9 | 20 | P342S (CCT→TCT) | casA | type I‑E CRISPR system Cascade subunit CasA |
| Reads supporting (aligned to +/- strand): ref base G (2/0); new base A (9/9); total (11/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAACAGAGACTCCGGCCCCTTTGAAGTCTTTATTTTTAAACCCTTCTGCAAAGGTATATAACGCCTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATA > NC_000913/2882893‑2883358 | gAACAGAGACTCCGGCCCCTTTGAAGTCTTTATTTTTAAACCCTTCTGCAAAGGTATATAACGCCTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCATAATCAATTCAAGAGAACTTTGCGGCGCAATATTTCTGAATTg > 1:117890/1‑250 (MQ=255) tttGAATTCTTTATTTTTAAACCCTTCTGCAAAGGTATATAACGCCTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCATAATCAATTCAAGAGAACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCAcg < 1:190432/250‑1 (MQ=255) ttttAAACCCTTCTGCAAAGGTATATAACGCCTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCATAATCAATTCAAGAGAACTTTGCGGCGAAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCcattttc < 1:159613/250‑1 (MQ=255) aaCCCTTCTGAAAAGGTATATACCGCTTTTGGTAAGGCTTTTTTTTATCCAAAACTACCATTCACTAGTGCGTTTAACCCATTGCCGTATTGTTGCCACCCCTGATAAAACATCAACAAATCATAACACCGTTCAAGAATAGATGCTTGATTATTACTATATCCCCCCAGAATCAATTCAAGAGAACTGTGCGGCGCAATATTTTTGAATTGATTAACAACCGCCGCCACGCGATTTCCATTTTCATTTTg < 2:89471/251‑1 (MQ=255) ccTTCTGCAAAGGTATATAACGCCTTGCGTAAGTCTGTTTTATATCCCAAACCAACATTCACTATTTCGTGTATCACATTGCCGTATTGTTGCCCCCCCTGATTAAACATCAACACATCATGACGCCTTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCATAATCAATTCAAGAGAACTTTGCGGCGCAATATTTCTTAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGaat < 1:198985/251‑1 (MQ=255) tCTGCAAAGGTATATAACGCCTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGaataat > 1:112667/1‑251 (MQ=255) tCTGCAAAGGGATATAACGCCTTGCGTAAGGCTGTTTTATATCCCACACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTGGCCACCCCTGATTAAACATCACCACATCCTGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATACCCCCATAATCAATTCAAGAGAACTTTGCGACACAATATTTCTGAATTGATTCACAACCCCCGCCACGCGATTTCCCTTTTCATTTTGaataat > 2:203332/1‑251 (MQ=255) aaaGGAATATAACGACTTGCGTAAGGCTGTTTTATATCCCCAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGACACACCTGATTAAACATCAACACATAATGACGCCGTTCAAGATTGGATGCTTGCTTATTACGATATCCACCCATAATCCATTCAAGAGGACTTTGCGGCGCACTATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATATTCTTAt > 2:88632/1‑251 (MQ=255) aaCGCCTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCATAATCAATTCAAGAGAACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACaa < 1:194438/250‑1 (MQ=255) aaCGCCTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCATAATCAATTCAAGAGAACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAAc > 1:131494/1‑251 (MQ=255) tataTCCCAACCAAACAGTCTCTATTTCGTTAATCCAATTGCCTTATGTTTGCCACCCCTGATTAAACATCAACAAATCAGGACTCCTTTAAAGAATAGATGCTTGATTATTACGATATCCCCCCATAATCAATTCAAGAGAACTTTGCGGCGCAATATTTCTTAATGGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCatga < 2:117890/250‑1 (MQ=255) aaaccaaaagaaaccaTTTCGTTTATCACATTGCAGTATTGTTGACACCCCTGATTAAACATCAACACATCATGACGCCGTTCCAGAGTAGATGACTGATTATTACGATCTCCCCCCATAATCAATTCACGAGAACTTTGCGGCGCACTAATTCTGAATTGATTCACAACCGCCGCCACGCGATTTCAATTTTCATTTTGAATAATATTATCTACCACAAATAGGCTGATATTTGTCTATGATGGTGCgg > 2:142746/16‑250 (MQ=255) cccGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCATAATCAATTCAAGAGAACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCt < 1:80479/250‑1 (MQ=255) cTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCATAATCAATTCAAGAGAACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTTTCTTGACTGtt > 1:373445/1‑250 (MQ=255) ttcaaaaaaataTGCTGGATAATTACGATCTCCCCCCAAAATCAATTCAATAGAACTTTGCGGCGCAATATTCCTGAATTGAGTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCAt < 2:373445/239‑1 (MQ=255) tCCCCCCATAATCAATTCAAGAGAACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCt > 1:81025/1‑251 (MQ=255) ccccccATAATCAATTCAAGAGAACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCtt > 1:6453/1‑251 (MQ=255) ccATAATCAATTCAAGAGAACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAAttt < 1:338254/157‑1 (MQ=255) ccATAATCAATTCAAGAGAACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTAATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCAATGATGGTGCGGCGGTGGTGAAAGCAAGAAAttt > 2:338254/1‑157 (MQ=255) cAAGAGAACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGtata > 1:141204/1‑250 (MQ=255) | GAACAGAGACTCCGGCCCCTTTGAAGTCTTTATTTTTAAACCCTTCTGCAAAGGTATATAACGCCTTGCGTAAGGCTGTTTTATATCCCAAACCAACAGTCACTATTTCGTTTATCACATTGCCGTATTGTTGCCACCCCTGATTAAACATCAACACATCATGACGCCGTTCAAGAATAGATGCTTGATTATTACGATATCCCCCCATAATCAATTCAAGAGGACTTTGCGGCGCAATATTTCTGAATTGATTCACAACCGCCGCCACGCGATTTCCATTTTCATTTTGAATAATCTTATCTACCACAACTCGGCTGATTTGTGTCCATGATGGTGCGGAGGTGGTGAAAGCAAGAAATTTTTCCTCAACCTCCCCTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATA > NC_000913/2882893‑2883358 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |