| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,851,821 | G→A | G274D (GGC→GAC) | hypB → | hydrogenase isoenzymes nickel incorporation protein HypB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,851,821 | 0 | G | A | 96.3% | 70.7 / NA | 28 | G274D (GGC→GAC) | hypB | hydrogenase isoenzymes nickel incorporation protein HypB |
| Reads supporting (aligned to +/- strand): ref base G (0/1); major base A (8/18); minor base C (0/1); total (8/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGTTGGCAACCTCGTATGCCCGGCCAGCTTCGATCTCGGTGAAAAACACAAAGTGGCGGTGCTTTCCGTTACCGAAGGTGAAGACAAACCACTGAAATATCCGCATATGTTTGCCGCCGCCTCGCTGATGCTGCTCAACAAAGTTGACCTGTTGCCGTATCTCAACTTTGACGTTGAAAAGTGCATCGCCTGCGCCCGCGAAGTCAATCCAGAAATTGAAATCATCCTTATTTCCGCCACCAGCGGCGAAGGGATGGACCAGTGGCTGAACTGGCTGGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGATCCGCACCATTGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAG > NC_000913/2851576‑2852053 | cGTTGGCAACCTCGTATGCCCGGCCAGCTTCGATCTCGGTGAAAAACACAAAGTGGCGGTGCTTTCCGTTACCGAAGGGGAAGACAAAACACTGAAATATCCGCATATGTTTGCCGCCGCCTCGCTGATGCTGCTCAACAAAATTGACCTGTTGCCGTATCTCAACTTTTACGTTGAAAAAAGCATCGCCTGCGCCCGCGAAAGCAATCCAGAAATTGAAATCATCCTTATTTTCGCCACCAGcgacga > 1:313194/1‑249 (MQ=255) ccTCGTATGCCCGGCCAGCTTCGATCTCGGTGAAAAACACAAAGTAGCGGTGCTTTCCGTTACCGAAGGTGAAGACAAACCACTGAAATATCCGCATATGTTTGCCGCCGCCTCGCTGATGCTGCTCAACAAAGTTGACCTGTTGCCGTATCTCAACTTTGACGTTGAAAAGTGCATCGCCTGCGCCCGCGAAGTCAATCCAGAAATTGAAATCATCCTTATTTCCGCCACCAGCGGCGAAGGGATGGAcc < 1:186970/251‑1 (MQ=255) ggtggCCCTGCCAGCCTCGATCTCGGTGAAAAACCCAACGTGGCGGTGCATTCCGTTGCCGAAGCTGAAGACAAACCACTGAAATAACCGCATATGTTTGCCGCCGCCTCGCTGATGCTGCTCAACAAAGTTGACCTGTTGCCGTACCTCAACTTTGACGTTGAAAAGTGCATCGCCTGCGCCCGCGAAGGCAATCCAGAAATTGAAATCATCCTTATCTCCGCCACCAGCGACGAAGGCATGGActagga < 2:12416/247‑6 (MQ=255) cGGCCAGCTTCGATCTCGGTGAAAAACACAAAGTGGCGGTGCTTTCCGTTACCGAAGGGGAAGACAAACCACTGAAATATCCGCCTATGTTTGCCGCCGCCCCCCTGATGCTGCTCAACAAAGTTGACCTGTTGCCGTATCTCCACTTTGACGTTTGAAAGGGCATCCCCTGCGCCCCCGCAGTCAATCCAGAAATTGAAATCATCCTTATTTTCCCCCCCCGCGACGAAGGGAGGGGCCAGTGGCTGAAc > 1:48825/1‑251 (MQ=255) cAGCTTCGATCTCGGTGAAAAACACAAAGTGGCGGTGCTTTCCGTTACCGAAGGTGAAGACAAACCACTGAAATATCCGCATATGTTTGCCGCCGCCTCGCTGATGCTGCTCAACAAAGTTGACCTGTTGCCGTATCTCAACTTTGACGTTGAAAAGTGCATCGCCTGCGCCCGCGAAGTCAATCCAGAAATTGAAATCATCCTTATTTCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAActggc < 1:75263/251‑1 (MQ=255) aGCTTCGATCTCGGTGAAAAACACAAAGTGGCGGTGCTTTCCGTTACCGAAGGTGAAGACAAACCACTGAAATATCCGCATATGTTTGCCGCCGCCTCGCTGATGCTGCTCAACAAAGTTGACCTGTTGCCGTATCTCAACTTTGACGTTGAAAAGTGCATCGCCTGCGCCCGCGAAGTCAATCCAGAAATTGAAATCATCCTTATTTCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAActggct < 1:19892/251‑1 (MQ=255) cGGTGAAAAACACAAAGTGGCGGTGCTTTCCGTTACCGAAGGTGAAGACAAACCACTGAAATATCCGCATATGTTTGCCGCCGCCTCGCTGATGCTGCTCAACAAAGTTGACCTGTTGCCGTATCTCAACTTTGACGTTGAAAAGTGCATCGCCTGCGCCCGCGAAGTCAATCCAGAAATTGAAATCATCCTTATTTCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAACTGGCTGGAGAcaca < 1:85006/249‑1 (MQ=255) tGCTTTCCGTTACCGAAGGTGAAGACAAACCACTGAAATATCCGCATATGTTTGCCGCCGCCTCGCTGATGCTGCTCAACAAAGTTGACCTGTTGCCGTATCTCAACTTTGACGTTGAAAAGTGCATCGCCTGCGCCCGCGAAGTCAATCCAGAACTTGAAATCATCCTTATTTCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAACTGGCTGGAGACACAGCGATGTGCATAGGCGTTCCCGGcc > 1:235877/1‑251 (MQ=255) ccGTTACCGAAGGTGAAGACAAACCACTGAAATATCCGCATATGTTTGCCGCCGCCTCGCTGATGCTGCTCAACAAAGTTGACCTGTTGCCGTATCTCAACTTTGACGTTGAAAAGTGCATCGCCTGCGCCCGCGAAGTCAATCCAGAAATTGAAATCATCCTTATTTCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAACTGGCTGGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGATcc < 1:84061/251‑1 (MQ=255) ccGTTACCGAAGGTGAAGACAAACCACTGAAATATCCGCATATGTTTGCCGCCGCCTCGCTGATGCTGCTCAACAAAGTTGACCTGGTGCCGTATCTCAACTTTGACGTTGAAAAGTGCATCGCCTGCGCCCGCGAAGTCAATCCAGAAATTGAAATCATCCTTATTTCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAACTGGCTGGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGATcc < 1:370573/251‑1 (MQ=255) ccGCATATGTTTGCCGCCGCCTCGCTGATGCTGCTCAACAAAGTTGACCTGTTGCCGTATCTCAACTTTGACGTTGAAAAGTGCATCGCCTGCGCCCGCGAAGTCAATCCAGAAATTGAAATCATCCTTATTGCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAACTGGCTGGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGATCCGCACCATTGACGGCAACCAGGCGAAAGTCGACGt < 1:344989/250‑1 (MQ=255) tGATGCTGCTCAACAAAGTTGACCTGTTGCCGTATCTTAACTTTGACGTTGAAAAGTGCATCGCCTGCGCCCGCGAAGTCAATCCAGAAATTGAAATCATCCTTATTTCCGCCACCAGCGACGAAGGAATGGACAAGTGGCTGAACTGGCTGGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGCTCCGCACCATTGCCGGCAACCAGGCGAACGTCGACGTCTGTGGAATTCAGCGCGGTGTCgctt > 2:91313/1‑248 (MQ=255) gctgctgattaacaaAGTTGACCTGTTGCCGTATCGTAACTTTGACGTTGAAAAGGGCATCGCCTGCGCCCGCGAAGTCAATCCAGAAATTGAATTCATCCTTATTCCCTCCACCAGCGACGAAGGGATGGACCAGTGGCTGAACTTGTTGGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGATCCGCACCATTGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGAtt < 1:15688/240‑1 (MQ=255) aacaaAGGTGACCTGTTGCCGTTACTCAACTTTGACGTTGAAAAGTGCATCGCCTGCGCCCGCGAAGTCAATCCAGAAACTGAAAGCATCCTTATTTCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAACTGGCTGGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGATCCGCCCCATTGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTc < 2:48825/251‑1 (MQ=255) acaaAGTTGACCTGTTGCCGTATCTCAACTTTGACGTTGAAAAGTGCATCGCCTGCGCCCGCGAAGTCAATCCAGAAATTGAAATCATCCTTATTTCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAACTGGCTGGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGATCCGCACCATTGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCg > 1:155739/1‑251 (MQ=255) gtaCCTGGTGCCGTATCCCAACTTTGATGTTTAAAAGTGCATCGCCCGCGCCCGCGAAGTCAATCCAGAAATTGAAATCATCCTTAGTTCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAACTGGCTGGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGATCCGCACCATTGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTATTCGGCATCTg < 2:256904/249‑1 (MQ=255) gACCTGTTGCCGTATCTCAACTTTGACGTTGAAAAGTGCATCGCCTGCGCCCGCGAAGTCAATCCAGAAATTGAAATCATCCTTATTTCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAACTGGCTGGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGATCCGCACCATTGACGGCAACCAGGCGAAAGTCTACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTg < 1:131093/250‑1 (MQ=255) aCCTGTTGCCGTATCTCAACTTTGACGTTGAAAAGTGCATCGCCTGCGCCCGCGAAGTCAATCCAGAAAGTGAAATCATCCTTATTTCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAACTGGCTTGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGATCCGCTCCATTGACGGCAACCAGTCGAAATTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCg < 1:266423/251‑1 (MQ=255) atccccTGCGCCCGCGAATTCAATCCATAAATTTAAATCATCCCTGTTTCCGCCACCATCGCCGAAGGGATGGACCAGTGGCTGGACGGGCTGGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGATCCGCACCATTGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAGCGGTCAGCCGCGCGTGGGCCAGTGGGTACTg < 2:313194/247‑1 (MQ=255) aggtaaTCCAGAAATTGAAAACATCCTTATTTCCACCACCCGGTACGAAGGTATGGACCAGTTGTCGAGCTGGCGGGACACACATCGATGTGCATATGCGGTCCCGGACAGATCCGCACCATTGCCGGCATCCAGGCGAAAGTCTACATCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCTGCTGCGATGAAAACGGTCAGCCGCGAGTGGGCCAGTTGGGACTGGTACACGTTGGCTTTGc < 2:290905/247‑1 (MQ=255) cAATCCAGAAATTGAAATCATCCTTATTTCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAACTGGCTGGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGATCCGCACCATTGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCa < 1:91313/250‑1 (MQ=255) ccgaccttGAAATCACCCTTATTTCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAACTGGCTGGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGATCCGCACCATTGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCg < 2:202606/245‑1 (MQ=255) aGAAATTGAAATCATCCTTATTTCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAACTGGCTGGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGATCCGCCCCATTGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAg > 1:28546/1‑153 (MQ=255) aGAAATTGAAATCATCCTTATGTCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAACTGGCTGGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGAGCCGCACCATTGACGGCAACCAGGCGAAAGTCGACGTTTGCGGCATTCAg < 2:28546/153‑1 (MQ=255) tGAAATCATCCTTATTTCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAACTGGCTGGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGATCCGCACCATTGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCg > 1:202606/1‑244 (MQ=255) gAAATCATCCTTATTTCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAACTGGCTGGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGATCCGCACCATTGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGtaattaa < 1:261348/250‑1 (MQ=255) catcCTTATTTCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAACTGGCTGGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGATCCGCACCATTGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGc > 1:59649/1‑251 (MQ=255) aTTTCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAACTGGCTGGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGATCCGCACCATTGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAg < 1:70196/229‑1 (MQ=255) aTTTCCGCCACCAGCGACGAAGGGATGGACCAGTGGCTGAACTGGCTGGAGACACAGCGATGTGCAGAGGCGTTCCCGGCCAGATCCGCAACATTGACGGCAAACAGGCGAAAGTCGACGTCTGCGGCATTCAGCTCGATGACGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCCCGTGGGCCAGGGGGTACGGGTCCACGGTGGCTTTGCCATGAgagatcggtgaaggggcgtgg > 2:70196/1‑229 (MQ=255) | CGTTGGCAACCTCGTATGCCCGGCCAGCTTCGATCTCGGTGAAAAACACAAAGTGGCGGTGCTTTCCGTTACCGAAGGTGAAGACAAACCACTGAAATATCCGCATATGTTTGCCGCCGCCTCGCTGATGCTGCTCAACAAAGTTGACCTGTTGCCGTATCTCAACTTTGACGTTGAAAAGTGCATCGCCTGCGCCCGCGAAGTCAATCCAGAAATTGAAATCATCCTTATTTCCGCCACCAGCGGCGAAGGGATGGACCAGTGGCTGAACTGGCTGGAGACACAGCGATGTGCATAGGCGTTCCCGGCCAGATCCGCACCATTGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAG > NC_000913/2851576‑2852053 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |