| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,814,595 | C→T | V47M (GTG→ATG) | luxS ← | S‑ribosylhomocysteine lyase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,814,595 | 0 | C | T | 88.9% | 65.4 / ‑0.6 | 27 | V47M (GTG→ATG) | luxS | S‑ribosylhomocysteine lyase |
| Reads supporting (aligned to +/- strand): ref base C (2/1); new base T (11/13); total (13/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.96e-01 | |||||||||||
CGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACCAATCAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCACTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACACGGTGATTGCGTCGCCATGCGGGGTGTTCATTGTTTTCGCCACCCGAACTGCAGGCGCTTCCATCCGGGTATGATCGACTGTGAAGCTATCTAACAACGGCATTTAGCCACCTCCGGTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTG > NC_000913/2814371‑2814832 | cGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACCAATCAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCATTTCTTTGTTCGGCACGCAGCAgcgc > 1:8814/1‑250 (MQ=255) ggATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACCAATCAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCATTTCTTTGTTCGGCACGCAGAAGCGCAGa < 1:262262/251‑1 (MQ=255) tctgatCCTGCACTTTCAGCCCGTCTGCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACCAATCAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCATTTCTTTGTTCGGc < 2:134616/227‑1 (MQ=255) tctgatCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACCAATCAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCATTTCTTTGTTCGGc > 1:134616/1‑227 (MQ=255) tgatCCTGCACTTTCCGCACGTCTTCCATTGCCGCTTTCCAGGAATCAGCAACACGCTGCACATCTGGCGTCCCAATCCAACTCATATACAAACCGGTGCGGCAGCCCATTGGCGAGATATCGCTAATCTCTACACCATTACCGTTAAGAAGGTTACGCATAAAACCAGCAAACAGGAGCTCCAGGGTATGAGTCCCTCTTTATGGCATCATTTCTTTGTTCGGCCAGCCGAAGCGCTGATTGAACACGGt > 2:221991/1‑251 (MQ=255) ccTGCACTTTCATCACTGCTTCCATTGCCGCTTTCCAAGCATCAGCAACTCGCTGCTCTTCTGGCGTACCAATCAGTCTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTTCCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCATTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACACGGTGAtt < 1:203222/251‑1 (MQ=255) gCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACCAATCAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCATTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACACGGTGATTGCGTCGCCATGCGGGGTGTTCATTGt > 1:290950/1‑251 (MQ=255) cAGCAACACGCGTCTAATCTGGCGTTCCAATCAGACTCATATAAAAACCGGTTCGGCAGCCCATTGGCGAGATATCGATAATCTCTTCACCATTATCGTTAAGAGGGTTACGCATAAATCCAGCAAACAGGTGCTTCAGTGTATGGATCCCTCTTTCTGGCATCATTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACACGGTGATTGCGTCGCCACGCGGGGTGTTCATTGTTTTCGCCACCCGAAc < 2:317499/250‑1 (MQ=255) acacGCTTCTCATCTGGCGTACCAATCAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTTCTCCAGGGTATGGATCCCTCTTTCTGGCATCATTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACCCGGTGATTGCGTCTCCAt > 2:134974/1‑214 (MQ=255) acacGCTGCTCATCTGGCGTACCAATCAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCATTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACACGGTGATTGCGTCGCCATGCGGGGTGTTCATTGTTTTCGCCACCCGAACTGCAgg < 1:49218/251‑1 (MQ=255) cATCTGGCGTACCAATCAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCGACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCATTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACACGGTGATTGCGTCGCCATGCGGGGTGTTCATTGTTTTCGCCACCCGAACTGCAGGCGCTTCCAt < 1:221991/250‑1 (MQ=255) ggCGTACCAATCAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCATTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACACGGTGATTGCGTCGCCATGCGGGGTGTTCATTGTTTTCGCCACCCGAACTGCAGGCGCTTCCATCCGGGt < 1:8748/251‑1 (MQ=255) aaaaCCGGTGCGGCAGCCAATTGGCGAGATATCGATAATCTCTACACCATTACCGTTACGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCATTTCTTTGTTCGGCACGCAGAAGCGCCGATCGAACACGGTGATTGCGTCGCCATTCGGGGTGTTCCTTGTTTTCGCCACCCGAACTGCAGGCGCTTCCATCCGGGTATGATCTCCTGTGAAGCTATca > 2:230626/1‑249 (MQ=255) aaaCCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCATTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACACGGTGATTGCGTCGCCATGCGGGGTGTTCATTGTTTTCGCCACCCGAACTGCAGGCGCTTCCATCCGGGTATGATCGACTGTGAAGCTATCTaa < 2:290950/251‑1 (MQ=255) ggTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTATGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCACTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACACGGTGATTGCGTCGCCATGCGGGGTGTTCATTGTTTTCGCCACCCGAACTGCACGCGCTTCCATCCGGGTATGATCGACTGTGAAGCTATCTAACAACg > 1:120698/1‑251 (MQ=255) ggCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCATTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACACGGTGATTGCGTCGCCATGCGGGGTGTTCATTGTTTTCGCCACCCGAACTGCAGGCGCTTCCATCCGGGTATGATCGACTGTGAAGCTATCTAACAACGGCAtt < 1:230626/251‑1 (MQ=255) aTTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCACTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACAAGGTGATTGCGTCGCCATGCGGGGGGTTCATTGTTTTCGCCACCCGAACTGCAGGCGCTTCCATCCGGGTATGATCGACTGTGAAGCTATCTAACAACGGCATTTAGCCAcc > 1:26731/1‑251 (MQ=255) ggCGAGATATCGATAATCTCTACACCATTAACGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGATCCAGGGTATGGATCCCTCTTTCTGGCATCATTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACACGGTGATTGCGTCGCCATGCGGGGTGTTCATTGTTTTCGCCACCCGAACTGCAGGCGCTTCCATCCGGGTATGATCGACTGTGAAACTATCTAACAACGGCATTTAGCCACCTcc > 1:213752/1‑251 (MQ=255) aCCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCATTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACACGGTGATTGCGTCGCCATGCGGGGTGTTCATTGTTTTCGCCACCCGAACTGCAGGCGCTTCCATCCGGGTATGATCGACTGTGAAGCTATCTAACAACGGCATTTAGCCACCTCCGGTAATTTTTTTAAAAATTTTCTGAActc > 1:284880/1‑251 (MQ=255) gTTAAGATGGTTACGCATAAAACCAACAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCATTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACACGGTGATTGCGTCGCCATGCGGGGTGTTCATTGTTTTCGCCACCCGAACTGCAGGCGCTTCCATCCGGGTATGATCGACTGTGAAGCTATCTAACAACGGCATTTAGCCACCTCCGGTAATTTTTTTAAAAATTTTCTGAACtcttt > 1:183696/1‑251 (MQ=255) tAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCATTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACACGGTGATTGCGTCGCCATGCGGGGTGTTCATTGTTTTCGCCACCCGAACTGCAGGCGCTTCCATCCGGGTATGATCGACTGTGAAGCTATCTAACAACGGCATTTAGCCACCTCCGGTAATTTTTTTAAAAATTTTCTGAACtctttc < 1:184258/250‑1 (MQ=255) gggtACGCTTAAAACCAGCAAACAGGTGCTCCAGGGTATGGTTCCCGCTTTTTGGCATCACTTCTTAATGCGGCGCTCTGAAGCGAAGATCGAACACGGGTATTGCGTCGCCATGCGGGGTGTTCATTGTTTTCCCCACCCGATCTGTAGGCGCTACCATCCGGGTATGATCGACTGTGAAGCTATCCAACAACGGCGTTTAGCCCTCTCCGGTAATTTGTTTAAGATTTTTCTGATCTCTGTCTTCCCAg < 2:26731/248‑1 (MQ=255) aCGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCATTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACACGGTGATTGCGTCGCCATGCGGGGTGTTCATTGTTTTCGCCACCCGAACTGCAGGCGCTTCCATCCGGGTATGATCGACTGTGAAGCTATCTAACAACGGCATTTAGCCACCTCCGGTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCg < 1:200331/250‑1 (MQ=255) aCAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCATTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACACGGTGATTGCGTCGCCATGCGGGGTGTTCATTGTTTTCGCCACCCGAACTGCAGGCGCTTCCATCCGGGTATGATCGACTGTGAAGCTATCTAACAACGGCATTTAGCCACCTCCGGTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAg < 1:96707/251‑1 (MQ=255) ccTCTTTCTGGCATCATTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACACGGTGATTGCGTCGCCATGCGGGGTGTTCATTGTTTTCGCCACCCGAACTGCAGGCGCTTCCATCCGGGTATGATCGACTGTGAAGCt < 1:97184/140‑1 (MQ=255) ccTCTTTCTGGCATCATTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACACGGTGATTGCGTCGCCATGCGGGGTGTTCATTGTTTTCGCCACACGAACTGCAGGCGCTTCCATCTGGGTATGATCGACTGTGAAGCt > 2:97184/1‑140 (MQ=255) tttCTGGCATCCTTTCTTTGTTCGGCACGCAGAAGCGCATATCTAACACGTTGCTTGCGTCGCCATGCGGGGTGTTCATTGTTTTCGCCACCCGAACTGCCGGCGCTTCCATCCGGGTATGTTCGACTGTGAAGCTATCTAACAACGGCATTTCGCCCCCTCCGGTAATTTTTTTAATACTTTTCTGAACTCTTTCTTCTCATGCGCGTCTGAGTTTATGAAAGACGCTCATTTGTTCTCCTCCTCCCtc > 2:28919/1‑249 (MQ=255) | CGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACCAATCAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCACTTCTTTGTTCGGCACGCAGAAGCGCAGATCGAACACGGTGATTGCGTCGCCATGCGGGGTGTTCATTGTTTTCGCCACCCGAACTGCAGGCGCTTCCATCCGGGTATGATCGACTGTGAAGCTATCTAACAACGGCATTTAGCCACCTCCGGTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTG > NC_000913/2814371‑2814832 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |