| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,778,119 | C→T | intergenic (+337/+27) | ypjF → / ← ypjA | toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter YpjA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,778,119 | 0 | C | T | 87.5% | 55.9 / ‑1.6 | 26 | intergenic (+337/+27) | ypjF/ypjA | toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter YpjA |
| Reads supporting (aligned to +/- strand): ref base C (1/2); new base T (13/8); total (16/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.98e-01 | |||||||||||
TTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCAGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATACCCCACCCCAAGATGCCCGCTTAACGTACTGCTGAATGAGGCTTTAATACCTGCCTGGTATATTCCACGTCTGCCCGACAAATAATTGACGAAATTACCGTCACTATTCACTTTCACCCGGTTATCATCGACAAATTCTTTGCGCACAG > NC_000913/2777882‑2778360 | tttCTTTTAGGACAAACAATGGGCCCAAAGTGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGATACACAACCAATTCAGAATCCGCCAGCCCACCAATCATGATTGGAAGGAGAAAGAACAACACCAACAAAACCAGGATGTTAGAAGTCTCAGCAAAACACCGACCAGACGGAGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGATCATGGTAACATGCAAGCCAACAGACGTggact > 2:3963/1‑248 (MQ=255) acaaTGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCAGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCTACAGATGTGGGCTTTTTCGTTGATGGTc > 1:16437/1‑251 (MQ=255) cAAAATGCACATTGAACTGATGATTACAATCAATTTAACAACAAATTACACAACCCATTCAGACTCCGCCAGCACACCAATCATGATTGGACGGAGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGACTCAGCAAAACACCGACCAGACGATGAGGAGACATAAAAGGATACGCAAAGTAGCACCGGCTCCTGGTAACATGAAAACCACCAGATGTGGTCTTTTCCGTTTATGGTCAAAACgccc > 2:321262/1‑247 (MQ=255) caatTTAACAACAAGTTACACAACCAAATGAAACTCCGCCAGCACAACAATAATGATTGGACGATGTAAGGACAACACCAATAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGATGGTGAGGAGACATAAAAGGATACGCAAAGTAGCCGCGGCTCCTGGTAACATGAAAGCCTACAGATGTGTGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTCCCGCGTTCCACgggg < 2:281710/250‑1 (MQ=255) atTTAACAACAAGTTACACAACCAATTCAGACTCCGCCAGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGAGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCTACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGAtt > 1:316532/1‑251 (MQ=255) aacaacAAGTTACACAACCAATTCATACTCCTCCAGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCTACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCcac < 1:162917/251‑1 (MQ=255) aGTTACACAACCAATTCAGACTCCGCCAGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGGAACATGAAAGCCTACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGc > 1:210930/1‑250 (MQ=255) cAATTCAGACTCCGCCAGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCTACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCtat > 1:241788/1‑250 (MQ=255) ggACGGTATAAGGACAACACCAACAAAAACAGGAAGATATAAGTCTCAGCAAATCCCCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGCGCCGCGGCTCCTGGTAACATGAATGCCTCCAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCTCGTTCCACGGGTATTCCACACCGGCACTATGGCTATACCCCACCCCAAGATGCCCGCTTAACTTActgctg < 2:66752/251‑1 (MQ=37) aCGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACGCCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATACCCCACCCCAAGATGCCCGCTTAACGTACTGCTGa > 1:194452/1‑250 (MQ=255) tgtAAGGACAACACCAACAAAAACAGGAAGTTAGACGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCTACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATACCCCACCCCAAGATGCCCGCTTAACGTACTGCTGAATgcg > 2:77451/1‑249 (MQ=255) agaaaggtccactccAACAAAAACAGGAATATAGAAGGCCAAGTAAAACTCCGACCAGACTGTGAGGAGACATAAAAGGATTCGTAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCTACAGATGTGGGCTTTTTCGTTGATGTTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCTCGGGGATTCCACACCGGCACTATGGCTATCCCCCACCCCAAGATTCCCGCTTAACGTACTGCTGAATGAg < 2:316532/238‑1 (MQ=255) caacaaAAACAGGAAGTAAGAAGTCTCAGCAAAACACGGACCAGACGGTGAGGAGACATAAAAGGAGACGCAAAGGAGCCGCGGCACCTGGTAACATGAAAGCCTACAGAGGTGGGCTTTTTCGTGGATTGTCTGAACGACCAGTTCACACCAGCTACCGCGTTCTACGGTGATTCGACACCGGCACTATGGCTATACCCCTCCCCAAGATGCCCGCTTAACGTACTGCTGAATGAGGCTTTAATAcctgc < 1:369905/251‑1 (MQ=255) caaAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCTACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATACCCCACCCCAAGATGCCCGCTTAACGTACTGCTGAATGAGGCTTTAATAcctgcctg < 1:224171/251‑1 (MQ=255) ttAGAAGTCTCAGCAAAACAAGGACAAGAAGGTGTGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCATACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACAAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGAACTATGGCTATAACACACCCCAAGATGCCCGCTTAAAGACCTGCTGAATGAGGATTTAATACCTGCATGGTATAttaccagt > 2:78461/1‑245 (MQ=255) aaGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGTTACGCAAAGGAGCCGCGGCTCCTGGTCACATGAAAGCCTACAGATGTGGGCTTTTTCGTTGTTGGTCAGAACGACCAGTTCACACCAGCTATCGCGTTCCACGGGGAATCCACACCGGCACAAGGGACAAACCCCACCCCAAGATGCCCGCTTAACGTTCTACTGAATGAGGCTTTAATACCTACCTGGTATTTTCCatgacagc > 2:195811/1‑244 (MQ=255) acCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCTACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATACCCCACCCCAAGATGCCCGCTTAACGTACTGCTGAATGAGGCTTTAATACCTGCCTGGTATATTCCACGTCTCCCCGACAAATAATTg > 1:70686/1‑250 (MQ=255) aCGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCTACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATACCCCACCCCAAGATGCCCGCTTAACGTACTGCTGAATGAGGCTTTAATACCTGCCTGGTATATTCCACGTCTGCCCGACAAATAATTGACGAAATTAc > 1:194696/1‑251 (MQ=255) ggagACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCTACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATACCCCACCCCAAGATGCCCGCTTAACGTACTGCTGAATGAGGCTTTAATACCTCCATGGTATATTCCACGTCTGCCCGCCAAATAATTGACGAAATTACCGTCACt > 2:119740/1‑251 (MQ=255) aaaaGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCTACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCtata > 1:21965/1‑138 (MQ=255) aaaaGGATACGCAAAGGAGCCGCGGCGCCTGGTAACATGAAAGCCTACAGATGTGGGCTTTTGCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTGCCACGGGGATTCCACACCGGCACTATGGCtata < 2:21965/138‑1 (MQ=25) aaaGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCTACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATACCCCACCCCAAGCTGCCCGCTTAACGTACTGCTGAATGAGGCTTTAATACCTGCCTGGTATATTCCACGTCCGCCCGCCAAATAATTGACGGAATTACCGTCACTATTCAAttt > 1:326112/1‑251 (MQ=255) ggATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATACCCCACCCCAAGATGCCCGCTTAACGTACTGCTGAATGAGGCTTTAATACCTGCCTGGTATATTCCACGTCTGCCCGACAAATAATTGACGAAATTACTGTCACTATTCACTTTCAc < 2:194452/251‑1 (MQ=255) aGGAGCCGCGGCTCCTGGTAACATGAAAGCCTACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATACCCCACCCCAAGATGCCCGCTTAACGTACTGCTGAATGAGGCTTTAATACCTGCCTGGTATATTCCACGTCTGCCCGACAAATAATTGACGAAATTACCGTCACTATTCACTTTCACCCGGTTatc > 1:320894/1‑250 (MQ=255) gcgGCTCCTGGTAACATGAAAGCCTACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATACCCCACCCCAAGATGCCCGCTTAACGTACTGCTGAATGAGGCTTTAATACCTGCCTGGTATATTCCACGTCTGCCCGACAAATAATTGACGAAATTACCGTCACTATTCACTTTCACCCGGTTATCATCGACaa < 1:326367/251‑1 (MQ=255) aTGAAAGCCCACAGAGGGGGTCTTTTTCGGTGATGGGTAGATCGACCCGTTCACACCAGATACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATACCCCGCCCCAAGATGCCCGCTTAACGTACTGCTGAAAGAGGCTTTAATACCTGCCTGGTATATTCCCCGTCTGCCCGACAATTAATTGACGAAATTACCGTCACTATTCACTTTCACCCGGTTATCATCGTCAAATTCTTTGCGCACAg < 2:16437/251‑1 (MQ=17) | TTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCAGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATACCCCACCCCAAGATGCCCGCTTAACGTACTGCTGAATGAGGCTTTAATACCTGCCTGGTATATTCCACGTCTGCCCGACAAATAATTGACGAAATTACCGTCACTATTCACTTTCACCCGGTTATCATCGACAAATTCTTTGCGCACAG > NC_000913/2777882‑2778360 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |