| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,684,686 | A→C | V274V (GTT→GTG) | glyA ← | serine hydroxymethyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,684,686 | 0 | A | C | 93.8% | 69.7 / ‑3.6 | 32 | V274V (GTT→GTG) | glyA | serine hydroxymethyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (2/0); new base C (17/13); total (19/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.49e-01 | |||||||||||
GATCGTTCGGTACGCTGTTTTTGTTGACGGTGATGTTAGCACGGCCCAGAGCGGCGTCTGCTTCTTTACCGGTCAGGTTTTTATCAACCAGATCAACCAGGAACAGGTGGTTATCAGTGCCGCCGGAAACCACTTTGTAGCCGCGCTCGAGGAACACTTCTACCATCGCTTTAGCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGAACTCAGGCTCCATCGCTTCTTTCAGAGCAACCGCTTTACCGGCGATTACGTGCATCAACGGACCGCCCTGACCACCAGGGAAAACGGCAG‑AGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGTAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGGTAAGCACCGAT > NC_000913/2684451‑2684931 | gATCGTTCGGTACGCTGTTTTTGTTGACGGTGATGTTAGCACGGCCCAGAGCGGCGTCTGCTTCTTTACCGGTCAGGTTTTTATCAACCAGATCAACCAGGAACAGGTGGTTATCAGTGCCGCCGGAAACCACTTTGTAGCCGCGCTCGAGGAACACTTCTACCATCGCTTTAGCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGAACTCAGGCTCCATCGCTTCTTTCAGAGCCACCGCTTTACCGGCg > 1:197598/1‑251 (MQ=255) tCGTTCGGTACGCTGTTTTTGTTGACGGTGATGTTAGCACGGCCCAGAGCGGCGTCTGCTTCTTTACCGGTCAGGTTTTTATCAACCAGATCAACCAGGAACAGGTGGTTATCAGTGCCGCCGGAAACCACTTTGTAGCCGCGCTCGAGGAACACTTCTACCATCGCTTTAGCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGAACTCAGGCTCCATCGCTTCTTTCAGAGCCACCGCTTTACCGGCGAt > 1:262926/1‑251 (MQ=255) gTTCGGTACGCTGTTTTTGTTGACGGTGATGTTAGCACGGCCCAGAGCGGCGTCTGCTTCTTTACCGGTCAGGTTTTTATCAACCAGATCAACCAGGAACAGGTGGTTATCAGTGCCGACGGAAACCACTTTGTAGCCGCGCTCGAGGAACACTTCTACAATCGCTTTAGCGTTTTTAGCGACATGCTGCTGGTAAGTTTTGAACTCAGGCTCCATCGCTTCTTTCAGAGCCCCCGCTTTACCGGCGAtt > 2:37132/1‑250 (MQ=255) gTTTTTGTTGACGGTGATGTTAGCACGGCCCAGAGCGGCGTCTGCTTCTTTAACGGTCAGGTTTTTATCAACCAGATCAACCAGGAACAGGTGGTTATCAGTGCCGCCGGAAACCACTTTGTAGCCGCGCTCGAGGAACACTTCTACCATCGCTTTAGCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGAACTCAGGCTCCATCGCTTCTTGCAGAGCCACCGCTTTACCGGCGATTACGAGCATAAACg > 1:5703/1‑251 (MQ=255) tgttgACGGTGATGTTAGCACGGCCCAGAGCGGCGTCTGCTTCTTTACCGGTCAGGTTTTTATCAACCAGATCAACCAGGAACAGGTGGTTATCAGTGCCGCCGGAAACCACTTTGTAGCCGCGCTCGAGGAACACTTCTACCATCGATTTAGCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGAACTCAGGCTCCATCGCTTCTTTCAGAGCCACCGCTTTACCGGCGATTACGTGCATCAACGGACCg > 2:62653/1‑251 (MQ=255) atgctAGCACGGCCCATAGCGGCGTCTGCTGCTTTACCGTTCAGTTTTTTCTTAACCAGACCAACCAGGAACAGGTGGTTATCAGTGCCGCCGGAAACCACTTTGTAGCCTCTCTCGAGGAACACTTCTACCCTCGCCTTAGCGGTTTTAGCGACCTTCTGCTGTTAAGTTTTGAACTCATGCTCCATCGCTTCTTTCATAGCCACCTCGTTACCGGCGATTCCGTGCATCAACGTTCCGCCCTGaccac < 2:362163/246‑1 (MQ=255) tggCCAAGAGAGGCGTCTGCTTTTTTACCGGTCAGGTTTTTCTCAAACAGCTCAACCAGGAAAAGGTGGTTATCAGTGCCGCCGGAAACCACTTTGTAGCCGCGCTCGTGGAACACTTCTACCATCGCTTTAGCGTTTTTAGCGACCTGCTGATGGAAAGTTTTGACATCAGGCACCATCGCTTCTTTCAGAGCCACCGCGTTACCGGCGATTACGTGCCTCACCTGATCGCCGCGACAACCAGGGACAAc > 2:160764/2‑251 (MQ=255) ccAGTGCGGCGTCTGCTGCTTTACCGGTCAGGTTTGTATCAACCAGAGCAACCAGGAACAGGTGGTTATCAGTGCCGCCGGAAACCACGTTGTAGCCGCGCTCGAGTAACACTTCTACCATCGCTTTAGCGTTTTTAGCGACCTGCGGCTGGTAAGTTTTGAACTCAGGCTCCATCGCTTCTTTCAGAGCCACCGCTTTACCGGCGATTACGTGCATCAACGGACCGCCCTGACCACCAGGGAAAACGGCa < 2:379946/251‑1 (MQ=255) cGGTCAGGTTTTTATCAACCAGATAAACCAGGAACAGGAGGTTATCAGTGCCGCCGGAAACCACTTTGTAGCCGCGCTCGAGGAACACTTCTACCATCGCTTTAGCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGAACTCAGGCTCCATCGCTTCTTTCAGAGCCACCGCTTTACCGGCGATTAAGTGCATCAACGGACCGCCCTGACCACCAGGGAAAACGGCAG‑AGTTCAGTTTTTTGTACAGctct > 1:312818/1‑251 (MQ=255) gTCAGGTTTTTATCAACCAGATCAACCAGGAACAGGTGGTTATCAGTGCCGCCGGAAACCACTTTGTAGCCGCGCTCGAGGAACACTTCTACCATCGCTTTAGCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGAACTCAGGCTCCATCGCTTCTTTCAGAGCCACCGCTTTACCGGCGATTACGTGCATCAACGGACCGCCCTGACCACCAGGGAAAACGGCAG‑AGTTCAGTTTTTTGTACAGCTCTTc > 1:173963/1‑251 (MQ=255) caaccagatcaaccagTAACAGGTGGTTATCAGTGACGCCGGAAACCACTTTGTAACCGCGTTCGAGGAACTCTTCTTCCATCGCTTTAGCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGAACTCAGGCTCCAGCGCTTCTTTCAGAGCCTCCGCTTTACCGGCGATTACGTGCATCAACGGCCCGCCCTGACCACCAGGGAAAACGGCAG‑AGTTCAGTTTTTCGTACAGCTTATCGCTACCTCCTTTc < 1:285049/251‑1 (MQ=255) gtgcaaccagGAACAGGGGGTTATCAGGTCCGCCGGAAGCCACTTTGTAGCCGCGCTCGAGGAACACTTCTACCATCGCTTTAGCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGAACTCAGGCTCCATCGCTTCTTTCAGAGCCACCGCTTTACCGGCGATTACGTGCATCAACGGACCGCCCTGACCACCAGGGAAAACGGCAG‑AGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCTCCAgg < 2:320638/248‑1 (MQ=255) agGAACAGGTGGTTATCAGTGCCGCCGGAAACCACTTTGTAGCCGCGCTCGAGGAACACTTCTACCATCGCTTTAGCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGAACTCAGGCTCCATCGCTTCTTTCAGAGCCACCGCTTTACCGGCGATTACGTGCATCAACGGACCGCCCTGACCACCAGGGAAAACGGCAG‑AGTTCAGTTTTTTGTACATCTCTTCGCTACCACCTTTCGCCAGGATCAGgcc < 1:302176/251‑1 (MQ=255) aCAGGTGGTTATCAGTGCCGCCGGAAACCACTTTGTAGCCGCGCTCGAGGAACACTTCTACCATCGCTTTAGCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGAACTCAGGCTCCATCGCTTCTTTCAGAGCCACCGCTTTACCGGCGATTACGTGCATCAACGGACCGCCCTGACCACCAGGGAAAACGGCAG‑AGTTCAGTTTTTTGTACAGctc > 1:347900/1‑217 (MQ=255) aCAGGGGGTTATCAGTGCCGCCGGAAACCACTTTGTAGCCGCGCTCGAGGAACACTTCTACCATCGCTTTATCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGAACTCAGGCGCCATCGCTTCTTTCAGAGCCACCGCTTTACCGGCGATTACGTGCATCATCGGACCGCCCTGACCACCAGGGAAAACGGCAG‑AGTTCAGTTTTTTGTACAGctc < 2:347900/217‑1 (MQ=255) ttggtTATAAGAGCCGCCGGAAACCACTTTGTATCCGCGCTCGAGGAACACTTCTACCATCGCTTTAGCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGAACTCAGGCACAATCGCTTCTTTCAGAGCCACCGCTTTACAGGCGATTGCGTGCATCCCCGTACCGCACTGACCACAAGGGAAA‑CAGAAGGAGTTCAGTTATTTGCACAGCTCTTTGCTACCACCTTTCGCCAGGATCACGCAGCcgcgcc > 2:83689/2‑250 (MQ=255) gtggtTATCAGTGCCGCCGGAAACCACTTTGTAGCCGCGCTCGAGGAACACTTCTACCATCGCTTTAGCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGAACTCAGGCTCCATCGCTTCTTTCAGAGCCACCGCTTTACCGGCGATTACGTGCATCAACGGACCGCCCTGACCACCAGGGAAAACGGCAG‑AGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCcgcgcg < 1:321397/251‑1 (MQ=255) gtTATCAGTGCCGCCGGAAACCACTTTGTAGCCGCGCTCGAGGAACACTTATACCATCGCTTTAGCGTTTTTAGCGACCGGCTGCTGGAAAGTTTTGAACTCAGGCTCCATCGCTTCTTTCAGAGCAACCGCTTTACCGGCGACTACGTGCAACAACGGACCGCCCTGACCAACAGGGAAAACGGCAG‑AGTTCAGCTTTTTTTACAGCTCTTCCCTACCACCTTTCACCAGGATccagacaccgagcgacc > 2:96237/1‑235 (MQ=255) gTGCCGCCGGTAACCACTTTGTAGCCGCGCTCGAGGAACACTTCTACCATCGCTTTAGCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGAACTCAGGCTCCATCGCTTCTTCCAGAGCCACCGCTTTAACGTCGATTACGTGCCACAAAGGACCGCCCTGACCACCTGGGCAAACGGCAG‑AGGTCAGTTTTTTGTACAGCTCTTCGCTAACACATTGCGCCAGGGTCAGgccacagcggggccacgccgg > 2:201939/1‑233 (MQ=255) gTGCCGCCGGAAACCACTTTGTAGCCGCGCTCGAGGAACACTTCTACCATCGCTTTAGCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGAACTCAGGCTCCATCGCTTCTTTCAGAGCCACCGCTTTACCGGCGATTACGTGCATCAACGGACCGCCCTGACCACCAGGGAAAACGGCAG‑AGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGcc > 1:198238/1‑249 (MQ=255) cgccgGAAACCACTTTGTAGCCGCGCTCGAGGAACACTTCTACCATCGCTTTAGCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGAACTCAGGCTCCATCGCTTCTTTCAGAGACACCGCTTTACCGGCGATTACGTGCATCAACGGACCGCCCTGACCACCAGGGAAAACGGCAG‑AGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGGCCCGCCAGGGtt > 1:252117/1‑251 (MQ=255) ttGTAGCCGTGCCCGAGGAACACTTCTACCATCGCTTTAGCGTTGTGAGCGACCTGCGGCTGGAAAGTTTTGAACTCAGCCTCCACCGCTTCTTTCAGAGCCACCGCTTTACCGGCGATTACTTGCATCAACGGACCGCCCTGACCACCAGGGAAAACGGCAG‑AGTTCAGTTTTTTGTACAGCTCTTCGCTACCCCCTTTCGCCAGGTTCAGGCCGCCGCGCGGTCCCGCCAGGGTTTTGTGAgtggt < 1:145008/248‑1 (MQ=255) ttGTAGCCGCGCTCGAGGAACACTTCTACCATCGTTTTAGCGTTTTTAGCCACCTGCTGCTGTTAAGTTTTGAACTCAGGCTCCATCGCTTCTTTCAGAGCCCCCGCTTTCCCGGCGATTACGTGCATCAACGGACCGCCCTGACCACCAGGGAAAACGGCAG‑ATTTCAGTTTTTTGTACAGCTCTTCGCTACCCCCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGtggtgg < 1:259702/250‑1 (MQ=255) tgcTCGAGGCACACTTCACCCAACGCTTTAGCGTTTTTAGCGACCTGCTGCTGGAAAGTTTTCAACCCAGAATCCATCGCTTCTTTCAGAGCCACCGCTTTACCGGCGTTTACGTACATCACCGGACCGCCCGGACCACCATGGAAAACGGCCG‑AGTCCAGTTTTTTGTACAGCTCTTCGCTCCCCCCATTCGACAGGATCCGGCCGCCGGGCGGACCCGCCAGGCTTTTGAGAGTGAGGGCAGTaacacc > 2:253209/2‑249 (MQ=255) gcTCGAGGAACACTTCTACCATCGCGTTAGCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGACCTCAGTCTCCATCGCTTCTTTCAGAGCCACCGCTTTACCGGCGATTACGTGCATCAACGGACCGCCCTGACCACCAGGGAAAACGGCAG‑AGTTCAGTTTTTTTTACAGCTCTTCGCTACCCCCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGTAGTAACAACg < 1:236547/251‑1 (MQ=255) cgaggaaacctgcttccATCGTTTTAGCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGAACTCAGGCCCCATCGCTTCTTTCAGAGCCACCGCTTTACCGGCGATTACGTGCATCAACGGACCGCCCTGACCACCAGGGAAAACGGCAG‑AGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCTCCAGGATCAGGCCGCCGCGCGGCCCCGCCAGGGTTTTGTGAGTGGTGGTAGTAACAACGTGa < 1:334528/236‑1 (MQ=255) acTTCTACCATCGCTTTAGCGTTTTTAGCGACCTGCTGCCGGTAAGTTTTGAACTCAGGCTCCATCGCTTCTTTCAGAGCAACCGCTTTACCGGCGATTACGTGCATCAACGGACCGCCCTGACCACCAGGGAAAACGGCAG‑AGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTACGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGTAGTAACAACGTGAGCATGAgg > 1:126816/1‑251 (MQ=255) ggCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGAACTCAGGCTCCATCGCTTCTTTCAGCGCCACCGCTTTACCGGCGATTACGTGCATCAACGGACCGCCCTGACCACCAGGTAAAACGGCAG‑AGTACAGTTTTTTGTACAGCTCTTCGCTAACCCCTTACGCCAGGATCAGGCCTCCGCGCGGGCCCGCCAGGGGTTTGTGCTTGGGTGTAGGAACAACGTGAGCATGAGGAACCGGGGTCggga > 2:18791/2‑247 (MQ=255) gagcgacctgtggcggttaatttttGAACTCAGGCTCCACCGCTTCTTTCAGAGCCACCGCTTTACCGGCGATTACGGTCTGCAACGGCCCGCCCTACCCCCCAGGGAAAACGTCAG‑AGTTCATTTTTTTGCACAGCTTTTCGCTCCCCCCTTTCGCCAGGATCAGCCCGCCGCGCGGAACCGCCAGGGTTTTGTGAGTGGTGGTAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACTCcagca < 2:318721/230‑1 (MQ=255) tgctgctgGTAAGTTTTGAACTCAGGCTCCATCGCTTCTTTCAGAGCCACCGCTTTACCGGCGATTACGTGCATCAACGGACCGCCCTGACCACCAGGGAAAACGGCAG‑AGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGCCCCGCCAGGGTTTTGTGAGTGGTGGTAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAAcc > 1:333164/1‑249 (MQ=255) cAGGCTCCATCGCTTCTTTCAGAGCCACCGCTTTACCGGCGATTACGTGCATCAACGGACCGCCCTGACCACCAGGGAAAACGGCAG‑AGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGGTTTGTGAGTGGTGGTAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATc > 1:97518/1‑250 (MQ=255) agagCCACCGCTTTACCGGCGATTGCGTGCACCAACGGACCGCCCTGACCACCAGGGAAAACGGAAG‑AGTTCAGTTTTTTGTTCAGCTCTGCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGGGGACCCGCCAGGGTTTTGTGAGTGGTGGTAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGGTAAGCACCGAt < 1:366450/251‑1 (MQ=255) | GATCGTTCGGTACGCTGTTTTTGTTGACGGTGATGTTAGCACGGCCCAGAGCGGCGTCTGCTTCTTTACCGGTCAGGTTTTTATCAACCAGATCAACCAGGAACAGGTGGTTATCAGTGCCGCCGGAAACCACTTTGTAGCCGCGCTCGAGGAACACTTCTACCATCGCTTTAGCGTTTTTAGCGACCTGCTGCTGGTAAGTTTTGAACTCAGGCTCCATCGCTTCTTTCAGAGCAACCGCTTTACCGGCGATTACGTGCATCAACGGACCGCCCTGACCACCAGGGAAAACGGCAG‑AGTTCAGTTTTTTGTACAGCTCTTCGCTACCACCTTTCGCCAGGATCAGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGTAGTAACAACGTGAGCATGAGGAACCGGGTTCGGGTAGACGCCAGCAGCAACCAGGCCCGCAACGTGCGCCATATCAACGAACAGGTAAGCACCGAT > NC_000913/2684451‑2684931 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |