| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,613,763 | G→A | E622K (GAA→AAA) | hyfR → | DNA‑binding transcriptional activator HyfR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,613,763 | 0 | G | A | 90.3% | 77.9 / ‑1.6 | 31 | E622K (GAA→AAA) | hyfR | DNA‑binding transcriptional activator HyfR |
| Reads supporting (aligned to +/- strand): ref base G (2/1); new base A (11/17); total (13/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.58e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
TGAATCGCGCAATTGACGCCATCCCGACCGAGGCACTACGCCAGTTGATGTCGTGGGATTGGCCGGGCAACGTGCGCGAGCTGGAAAACGTGATTGAGCGGGCGGTACTGTTGACTCGTGGTAACAGTCTGAATTTACATCTAAATGTCCGACAAAGCCGTTTACTGCCGACGCTAAATGAAGATTCAGCGCTTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAGAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCATTGTTGCCGGGCCCCGTGGCGCAGCGACGCGATTAGGGATGAAGCGCACCACGCTGCTGTCACGAATGCAGCGGCTGGGGATCTCGGTTCGCGAGGTGTTGTAATCTGCTTTTGCAGGAGTATGCATGAGAAACAAACTCTCTTTCGACTTGCAGTTGAGCGCCAGAAAAGCGGCAATCGCTGAACGGATTGCCGCC > NC_000913/2613518‑2614005 | ggAATGGCGCTATTGGCGCCATCCCGATCGAGGCATTACGCCAGTTGATGTGGTGGGATGGGCCGGGCGACGTGTGGGAGATGGAAAACGTGATTGAGTGGGCGGTACTGTTGACTCGTGGTAACAGTCTGAATTTACATCTAAATGTCCGACAAAGCCGTTTACTGCCGACGCTAAATGAAGATTCAGCGCGTCGCAGTTCAAGTGCGCAGTTACTGCCCCCGACGACGCCAGAGAATTACgaaaaa‑gaa < 2:255587/250‑1 (MQ=255) cgcaatgtacgctagcccGATCGAGGCACTACGCCAGTTGATGTCGTGGGATTGGCCGGGCAACGTGCGCGAGCTGGAAAACGTGATTGAGCGGGCGGTACTGTTGACTCGTGGTAACAGTCTGAATTTTCATCTAAAGGTCCGACAAAGCCGTTTACTGCCGACGCTAAATGAAGATTCAGCGCTTCTCAGTTCAATGGCGCAGTTACGGCACCCGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAgc < 1:28845/236‑1 (MQ=255) aaTTGACGCCATCCCGACCGAGGAACTACGCCAGTTGATGTCGTGGGATTGGCCGGGCAACGTGCGCGAGCTGGAAAACGTGATTGAGCGGGCGGCACTGTTGACTCGTGGTAACAGTCTGAATTTACATCTAAATGTCCGACAAAGCCGTTTACTGCCGACGCTAAATGAAGATTCAGAGCTTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGCAGAAAAA‑GAACGTCAgcgc > 2:224498/1‑250 (MQ=255) aTTGACGCCATCCCGACCGAGGCACTACGCCAGTTGATGTCGTGGGATTGGCCGGGCAACGTGCGCGAGCTGGAAAACGTGATTGAGCGGGCGGTACTGTTGACTCGTGGTAACAGTCTGAATTTACATCTAAATGTCCGACAAAGCCGTTTACTGCCGACGCTAAATGAAGATTCAGCGCTTCGCCGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGACTGACGAAAAA‑GAACGTCAGCGCAt > 1:249426/1‑251 (MQ=255) tGACGCAATCCCGACAGAGGCTCGACGCCAGTTGATGTCGTGGGATTGGCCGGGGAACGTGCGCGAGCTGGAAAACGTGATTGAGCGGGCGGTACTGTTGACTCGTGGTAACAGTCTGAATTTACATCTAAATGTCCGACAAAGCCGTTTACTGCCGACGCTAAATGAAGATTCAGCGCTTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAGCGCAtt < 2:232733/250‑1 (MQ=255) gACGCCATCCCGACCGAGGCACTACGCCAGTTGATGTCGTGGGATTGGCCGGGCAACGTGCGCGAGCTGGAAAACGTGATTGAGCGGGCGGTACTGTTGACTCGTGGTAACAGTCTGAATTTACATCTAAATGTCCGACAAAGCCGTTTACTGCCGACGCTAAATGAAGAGTCAGCGCTTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAGCGCATTg < 1:161085/250‑1 (MQ=255) tctagaccgaGGCACTACGACAGTTGATGTCGTGGGATTGGTCGGGCACCGTGCGCGAGATGTAAAACGTGATAGAGCGGGCGGTACTGTTGACTCGTGGTAACAGGCTGAATTTACATCTAAATGTCCGACAAAGCCGTTTACTGCCGACGCTAAAAGAAGCTTCAGCGCTTCGCAGTTACATGTCGCAGTTACTGCACCCGCCGACGCCAGAGAATGACGAAGAA‑GAACGTCAGCGCATAGTTCAgg > 2:134338/5‑249 (MQ=255) ggcccTACGCCAGTTGATGTCGGGGGATTTGCCGTGCAACGTGCTCGAGCTGGAAAACGTGATTGGGCGGGCGGTACTGTTGCATTGTGGTAACAGTCGGAATTTACATCTAAATGTCCGACAAAGCCGTTTACTGCCGACGCTAAATGAAGATTCAGCGCTTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGaaa < 2:91811/247‑1 (MQ=255) aCGCCAGTTGATGTCGTGGGATTGGCCGGGCAAAGTGCGCGAACTGGAAAACGTGCTTGAGCGGGCGGTACTGTTGACTCGTGGTAACAGTCTGAATTTACATCTAAATGTCCGACGAAGCCGTTTACTGCCGACTCTAAATGAAGATTCAGCGATTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGAAGCCAGAGAATGACGA‑GAATGAGCGGCAGCGCGTTGGTCAGGTATTGCGAGAACCCAATg > 1:305713/1‑251 (MQ=255) gTTGATGTCGTGGGATTGGCCGGGCAACGTGCGCGAGCTGGAAAACGTGATTGAGCGGGCGGTACTGTTGACTCGTGGTAACAGTCTGAATTTACATCTAAATGTCCGACAAAGCCGTTTACTGCCGACGCTAAATGAAGATTCAGCGCTTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCAttg < 1:224498/251‑1 (MQ=255) ttGATGTCGTGGGATTGGCCGGGCAACGTGCGCGAGCTGGAAAACGTGATTGAGCGGGCGGTACTGTTGACTCGTGGTAACAGTCTGAATTTACATCTAAATGTCCGACAAAGCCGTTTACTGCCGACGCTAAATGAAGATTCAGCGCTTCGAAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCAttgt > 1:369962/1‑251 (MQ=255) gTCGTGGGATTGGCCGGGCAACGTGCGCGAGCTGGAAAACGTGATTGAGCGGGCGGTACTGTTGACTCGTGGTAACAGTCTGAATTTACATCTAAATGTCCGACAAAGCCGTTTACTGCCGACGCTAAATGAAGATTCAGCGCTTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCATTGTTGCCg > 1:9096/1‑251 (MQ=255) ggCAACGTGCGCGAGCTGGAAAACGTGATTGAGCGGGCGGTACTGTTGACTCGTGGTAACAGTCTGAATTTCCATCTAAATGTCCGACAAAGCCGTTTACTGCCGACGCTAAATGAAGATTCAGCGCTTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAGAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCATTGTTGCCGGGCCCCGTGGCGCAGc < 1:147942/251‑1 (MQ=255) gTTGACTCGTGGTAACAGTCTGAATTTACATCTAAATGTCCGACAAAGCCGTTTACTGCCGACGCTAAATGAAGATTCAGCGCTTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCATTGTTGCCGGGCCCCGTGGCGCAGCGACGCGATTAGGGATGAAGCGCACCACGCTGCTGTCACGAAt < 1:176910/249‑1 (MQ=255) tgacccgttgtaccatcatGAATTTACATCCAAATGTCCTGCAAAGCCGTTTACTGCCGGCGCTAAATGAAGATTCAGCGCTTCGCATCTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCATTGTTGCCGGGCCCCGTGGCGCAGCGACGCGATTAGGGATGAAGCGCACCACGCTGCTGTCACGAATGCa < 2:9096/232‑1 (MQ=255) ggTAACAGTCTGAATTTACATCTAAATGTCCGACAAAGCCGTTTACTGCCGACGCTAAATGAAGATTCAGCGCTTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCATTGTTGCCGGGCCCCGTGGCGCAGCGACGCGATTAGGGATGAAGCGCACCACGCTGCTGTCACGAATGCAGCGGCTgg < 1:299058/250‑1 (MQ=255) tAACAGTCTGAATTTACATCTAAATGTCCGACAAAGCCGTTTACTGCCGACGCTAAATGAAGATTCAGCGCTTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCATTGTTGCCGGGCCCCGTGGCGCAGCGATGCGATTAGGGATGAAGCGCACCACGCTGCTGTCACGAATGCAGCGGCTggggg > 1:134794/1‑250 (MQ=255) aCAGTCTGAATTTACATCTAAATGTCCGACAAAGCCGTTTACTGCCGACGCTAAATGAAGATTCAGCGCTTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCATTGTTGCCGGGCCCCGTGGGGCAGCGACGCGATTCGGGATGAAGCGCACCACGCCGCTGTCACGAATGCAGCGGCTGGGGAtc > 2:339252/1‑251 (MQ=255) cAGTCTGAATTTACATCTAAATGTCCGACAAAGCCGTTTACTGCCGACGCAAAATGAAGATTCAGCGCTTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCATTGTTGCCGGGCCCCGTGGCGCAGCGACGCGATTAGGGATGAAGCGCACCACGCTGCTGTCACGAATGCAGCGGCTGGGGAtct < 1:23977/251‑1 (MQ=255) tGAATTTACATCTAAATGTCCGACAAAGCCGTTTACTGCCGACGCTAAATGAAGATTCAGCGCTTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCATTGTTGCCGGGCCCCGTGGCGCAGCGACGCGATTAGGGATGAAGCGCACCACGCTGCTGTCACGAATGCAGCGGCTGGGGATCTCGGtt > 1:53185/1‑251 (MQ=255) cTAAATGTCCGACAAAGCCGTTTACTGCCGACGCTAAATGAAGATTCAGCGCTTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCATTGTTGCCGGGCCCCGTGGCGCAGCGACGCGATTAGGGATGAAGCGCACCACGCTGCTGTCACGAATGCAGCGGCTGGGGAt > 2:114677/1‑233 (MQ=255) cTAAATGTCCGACAAAGCCGTTTACTGCCGACGCTAAATGAAGATTCAGCGCTTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCATTGTTGCCGGGCCCCGTGGCGCAGCGACGCGATTAGGGATGAAGCGCACCACGCTGCTGTCACGAATGCAGCGGCTGGGGAt < 1:114677/233‑1 (MQ=255) aaGCCGTTTACTGCCGACGCTAAATGAAGATTCAGCGCTTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCATTGTTGCCGGGCCCCGTGGCGCAGCGACGCGATTAGGGATGAAGCGCACCACGCTGCTGTCACGAATGCAGCGGCTGGGGATCTCGGTTCGCGAGGTGTTGTAATCTGCTTTTg < 1:339252/251‑1 (MQ=255) aCTGCCGACGCTAAATGAAGATTCAGCGCTTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCATTGTTGCCGGGCCCCGTGGCGCAGCGACGCGATTAGGGATGAAGCGCACCACGCTGCTGTCACGAATGCAGCGGCTGGGGATCTCGGTTCGCTAGGTGTTGTAATCTGCTTTTGCAGGAGTAt < 1:293424/251‑1 (MQ=255) cgctgttcggaggtCAATGGCGCAGTTCCTCCCTCCGACGACGCCAGAGAATGGCGAAAAA‑GAACGTCAGCGCATTGTTCAGTGATTGCGATAAACCAATGGCATTGTTGCCGGGCCCCGTGGCGCAGCGACGCGATTAGGGATGAAGCGCACCACGCTGCTGTCACGAATGCAGCGGCTGGGGATCTCGGTTCGCGAGGTGTTGTAAGCTGCTTTTGCAGGAGTATGCATGAGAAACAAACTCTCTTTCg < 2:249426/238‑1 (MQ=255) cgcTTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCATTGTTGCCGGGCCCCGTGGCGCAGCGACGCGATTAGGGATGAAGCGCACCACGCTGCTGTCACGAATGCAGCGGCTGGGGATCTCGGTTCGCGAGGTGTTGTAATCTGCTTTTGCAGGAGTATGCATGAGAAACAAACTCTCTTTCGAc < 1:350237/251‑1 (MQ=255) cgcTTCGCAGTTCAATGGCGCAGTTACTGCACCCGAAGACGCCAGAGAATGAAGAAAAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCATTGTTGCCGGGCCCCGTGGCGCAGCGACGCGATTAGGGATGAAGCGCACCACGCTGCTGTCACGAATGCAGCGGCTGGGGATCTCGGTTCGCGAGGTGTTGTAATCTGCTTTTGCAGGAGTATGCATGAGAAACAAACTCTCTTTCGAc < 1:85178/251‑1 (MQ=255) tCGCAGTTTAATGTCGCAGTTACTGCCACCGACGAAGCCAGAGAATGGCGAAAAA‑GAACGTAAGCGCATTGTTCAGGGAGATCAAGAAACCAATGGAATTGTTGCGGGGCCCCGTGGCGCAGCGACGCGAGTAGGTATGAAGCGCTCCACGCTGTTGTCACGAATTCAGCGGCTGGGGATCTCGGTGCGCGAGGTGTTGTAATCTGCTTTTGCAGGAGTATGCATGAGAAACAAACTCTCTTTCGAcgg < 2:158672/249‑3 (MQ=255) cAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCATTGTTGCCGGGCCCCGTGGCGCAGCGACGCGATTAGGGATGAAGCGCACCACGCTGCTGTCACGAATGCAGCGGCTGGGGATCTCGGTTCGCGAGGTGTTGTAATCTGCTTTTGCAGGAGTATGCATGAGAAACAAACTCTCTTTCGACTTGCAGTTGAg < 1:98318/250‑1 (MQ=255) cgTTACTGCACCAGACGACGCCAGAGAATGACGAAAAA‑GAACGTCAGCGCATTGTTCATGTATTGCGAGAAACCAATGGCATTGTTGCCGGGCCCCGTGGCGCAGCGACGCGATTAGGGATGAAGCGCCCCACGCTGCTGTCCCGAATGCAGCGGCTGGGGATATCGGTTCGCGAGGTGTTGTAATCTGCTTTTGCAGGGGGATGCATGAGACACAAACTTTCTTTCGACTTGCAGTTTATCGCCATaaa > 2:3120/2‑250 (MQ=255) ccAGAGAATGACGAAAAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCATTGTTGCCGGGCCCCGTGGCGCAGCGACGCGATTAGGGATGAAGCGCACCACGCTGCTGTCACGAATGCAGCGGCTGGGGATCTCGGTTCGCGAGGTGTTGTCATCTGCTTTTGCAGGAGGATGCATGAGAAACACACTCTCTTTCGTCTTGCCGTTGAGCCCCAGAAAAGCGGCAATAGCTGCACGGAt > 2:295287/1‑251 (MQ=255) aTGACGAAAAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCATTGTTGCCGAGCCACGTGGCGCAGCGACGCGGTTAGGGATGAAGCGCAACACGCTGCTGTCACGAATGCAGCGGCTGGGGATCGCGGTACGCGAGGAGTTGTACTCTGATTTTGAAGGAGTATGAATGGGAAACACACTCTCTATCTACTTGCAATTTATCGCACGAAACTCGGCAATCGCTGAACGGATTgcccac > 2:155630/1‑248 (MQ=255) | TGAATCGCGCAATTGACGCCATCCCGACCGAGGCACTACGCCAGTTGATGTCGTGGGATTGGCCGGGCAACGTGCGCGAGCTGGAAAACGTGATTGAGCGGGCGGTACTGTTGACTCGTGGTAACAGTCTGAATTTACATCTAAATGTCCGACAAAGCCGTTTACTGCCGACGCTAAATGAAGATTCAGCGCTTCGCAGTTCAATGGCGCAGTTACTGCACCCGACGACGCCAGAGAATGACGAAGAA‑GAACGTCAGCGCATTGTTCAGGTATTGCGAGAAACCAATGGCATTGTTGCCGGGCCCCGTGGCGCAGCGACGCGATTAGGGATGAAGCGCACCACGCTGCTGTCACGAATGCAGCGGCTGGGGATCTCGGTTCGCGAGGTGTTGTAATCTGCTTTTGCAGGAGTATGCATGAGAAACAAACTCTCTTTCGACTTGCAGTTGAGCGCCAGAAAAGCGGCAATCGCTGAACGGATTGCCGCC > NC_000913/2613518‑2614005 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |