| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,600,978 | C→T | intergenic (+30/‑223) | bcp → / → hyfA | thiol peroxidase/hydrogenase 4 component A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,600,978 | 0 | C | T | 90.0% | 68.9 / ‑1.1 | 30 | intergenic (+30/‑223) | bcp/hyfA | thiol peroxidase/hydrogenase 4 component A |
| Reads supporting (aligned to +/- strand): ref base C (1/2); new base T (14/13); total (15/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.86e-01 | |||||||||||
GCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAATACATAACTTATTGAATATATTGAGTTAATCAGAATGGCATCCTTTATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACATGAACCGCTTTGTGGTGGCC > NC_000913/2600732‑2601221 | gctgctTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGc < 1:104119/251‑1 (MQ=255) tACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGCGGCCAGCATAcc > 1:126268/1‑251 (MQ=255) tACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGCGGCCAGCATAcc > 1:362636/1‑251 (MQ=255) gCTCCTGTCTGATGAGGACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGCGGCACGCATACCTc > 2:146243/1‑250 (MQ=255) cTCCTGTCTGATGAGGACCACCAGGAGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGCCGATTTCAAAACCAGCAATCACCCCGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCAATTACGTGCTGGCTGCGTTTGCGGCCAGCATACCTCAc > 2:15089/1‑251 (MQ=255) taGGACAACCAGGTGTGAGAACAATTAGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGCTTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGACTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGCGGCCAGCATACCTCCATTCTCGtactcc > 2:341816/2‑246 (MQ=255) gACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTTAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGCGGCCAGCATACCTCTCTTCTCGTGATCAAGa < 1:70205/251‑1 (MQ=255) ccaGGTGTGCGAACAATTCGGCGTCAGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAACTTCCTGATTGACGCTGATGGCAAAATCGCACATGACTTTGACGCTTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCAGGCTGCGTTTGCGACCAGCCTACCTCACTTCTCTTGATCAAgtgcac > 2:106900/1‑245 (MQ=255) cGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGc < 2:105043/250‑1 (MQ=255) gccTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCAt < 1:15089/250‑1 (MQ=255) cATGGGCAAAACCTACGATGACATTCATCGCATCAGCTTCCTGATTGACGCTGATGGCAAAATCAAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGAAGATGTGCTGAACAGGCTGAAAGAACACGCCGGCTTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGAGGCCCACAGACCTCCATTCTCGTGATCAAGAACACATTATCGCTTGCCCCTGCGCCACGGGTGTCGGATCCAtttttt > 2:143280/1‑251 (MQ=255) cAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGaa < 1:233675/251‑1 (MQ=255) aaaCCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACg > 1:9245/1‑251 (MQ=255) aacctaagtaggcattcaccccagtaGCTTCCTGATTGACGCTGATGGCAAAAACGAAAATTGCTTTGACGATTTCAAAACCAGCAATCCCCACGACGTTGTGCTTAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGCGGCCATCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAGCGt < 2:126268/226‑1 (MQ=255) cTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGCGGCCCGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTa > 1:339626/1‑250 (MQ=255) aCGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTaa < 1:106131/249‑1 (MQ=255) aTGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCC‑TGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGAcc > 1:213800/1‑250 (MQ=255) atcccATCAGCATCCGGATTGACGCTGATGGCAAAACCAACCATGTCCTTGACGAATTCAAAACCAGCAATCCCCTCGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCGCGCTTTCCCCTGCTACATGTGTGTCGAATCCATTTTTTGCTCAACGTTAATGACCATCAttttt < 2:9245/247‑1 (MQ=255) tCAGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCg > 1:240089/1‑251 (MQ=255) tCAGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTATCGAATCCATTTTTTGCTGAACGTTAATGACCTTCATTTTTGTACCg > 1:208774/1‑251 (MQ=255) gCTTCCTGATTGACACTGATGGCAAAATCGAACATGTCTTTGACTATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGCGGCCAGCATACCTCTCTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTc < 1:43920/251‑1 (MQ=255) gACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCACAACCAGCAATCACAAAGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTGCTTCGCTCCATTCCGTGCTGGCTGCGTTTGCGGCCAGCATACCTCACTTCTCGTGATCAACATCACATTCTCGCTTTACCCTGCGACACGGGCGTCGAATCCATTTTTTGCTAAACGATAATGACCATCATTTTTGTACCATTCAGattcacgtt > 2:373716/1‑243 (MQ=255) gACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGt < 1:115333/250‑1 (MQ=255) acgctgtaggCAAAATCGAACATGTCTTTGACGATTTCAAAACCATCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTGTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGtga < 2:78880/243‑3 (MQ=255) aTTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAATACATAACTTATTGAATATATTGAGTTAATCa < 1:146243/251‑1 (MQ=255) tCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAATACATAACTTATTGAATATATTGAGTTAATCAGa < 1:7522/250‑1 (MQ=255) cacGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCAAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGgtg < 1:64454/136‑1 (MQ=255) cacGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTACTCCATTCCGTGCTGGCTGCGCTTGCGGCAAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGgtg > 2:64454/1‑136 (MQ=255) aCTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGTTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAATACATAACTTATTGAATATATTGAGTTAATCAGAATGGCATCCTTTATGCAATATGAAATGCAATGtt > 1:144320/1‑251 (MQ=255) ggctgCGTTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAATACATAACTTATTGAATATATTGAGTTAATCAGAATGGCATCCTTTATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACATGAACCGCTTTGTGGTGGcc < 1:39048/251‑1 (MQ=255) | GCTGCTTAACTTTACGCTCCTGTCTGATGAGGACCACCAGGTGTGCGAACAATTCGGCGTCTGGGGTGAAAAGTCCTTCATGGGCAAAACCTACGATGGCATTCATCGCATCAGCTTCCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAATACATAACTTATTGAATATATTGAGTTAATCAGAATGGCATCCTTTATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACATGAACCGCTTTGTGGTGGCC > NC_000913/2600732‑2601221 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |