| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,204,395 | T→A | intergenic (+106/‑201) | yehK → / → yehL | uncharacterized protein YehK/putative AAA(+) MoxR family ATPase YehL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,204,395 | 0 | T | A | 86.4% | 50.1 / 0.8 | 22 | intergenic (+106/‑201) | yehK/yehL | uncharacterized protein YehK/putative AAA(+) MoxR family ATPase YehL |
| Reads supporting (aligned to +/- strand): ref base T (2/1); new base A (12/7); total (14/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.79e-01 | |||||||||||
GACCCGCTAATAAATGATGCGTTGATTTATATAAGAGATGAGTGTATTGATGAGCGGAAATTACGAGGTGAATCACCTGAAACTGTAATAGCAATTTTTAATCGTGAACTACAGAATATATTCAACCAAGAAATAGAATAATATACTCTAAATAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAGAACCTGCCTCACCAGCAGGTTTTTTTATTTACTGTGATCTGCTTTCCAGATATTTTTCGCTCAAACAACTAATGCGCCAAACATTTATTGCGCGTAAAATATCGTTTATTTCATTAATACATTTCAGGGATGAATATATGTCACCGCAGAATAATCATCTGCAGCGTCCGCC > NC_000913/2204149‑2204630 | gACCCGCTAAGAAATGATGCGTTGATTTATATAAGAGATGAGTGTATTGATGAGCGGAAAGTACGAGGTGAAGCACCTGAAACTGTAATAGCAAGTTTTAATCGTGAACTACAGAATATATTCAACCAAGAAATAGAATAATATACTCTAAATAATTCAAATTGGTCCGATCCGGCGCAATGTCCCAATGGCCTGGATTATAAAGCTCATTACCTTAATTGCAACGTGGTCCAGCCGTTGTTATAAatcg < 2:353661/250‑1 (MQ=255) cGCTAATAAATGATGCGGTGATTTATATAAGAGATGAGAGTCTTGATGAGCGGAAATTACGAGGTGAATCACCTGAAACTGTAATAGCAATTTTTAATAGTGAACTACAGAATATATTCAACCAAGAAATAGAATAATATACTCAAAATAATTCAAATTGGTCCGATCCGACGCAACGTCCAAATGGCCTGGATTATAACTCTCATTATCTTAATTGCACCGGGGTCAACCAGTGGTTAAAAAtcgttcgt > 2:361570/1‑251 (MQ=255) atgaGCGGAAATTACGAGGTGAATCACCTGAAACTGTAATAGCAATTTTTAATCGTGAACTACAGAATATATTCAACCAAGAAATAGAATAATATACTCTAAATAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAAATCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTTTTAGGCCTGAAAATAg < 1:121549/251‑1 (MQ=255) aaTCACCTGAAACTGTAATAGCAATTTTTAATCGTGAACTACAGAATATATTCAACCAAGAAATAGAATAATATACTCTAAATAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAAATCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAGAACCTGCCTc > 1:8996/1‑250 (MQ=255) tAATAGCAATTTTTAATCGTGAACTACAGAATATATTCAACCAAGAAATAGAATAATATACTCTAAATAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAAATCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAGAACCTGCCt > 1:383192/1‑234 (MQ=255) tAATAGCAATGTTTAAACGTTAACTACAAAATATATTCAACCAAGAAATAGAATAATATACGCTAAATAATTCAAATTGGGCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATAAATCTCATTATCTTAATGGCAACGGGGTCCAGCCGTGGTTATAAATCGTTCGTTGGAACACGAGGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAGAACCTGCCt < 2:383192/234‑1 (MQ=255) gCAATTTTTAATCGTGAACTACAGAATATATTCAACCAAGAAATAGAATAATATACTCTAAATAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAAATCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAGAACCTGCCTCACCAGCAGGTTTTtttattta < 1:168355/251‑1 (MQ=255) aTTTTTAATCGTGAACTACAGAATATATTCAACCAAGAAATAGAATAATATACTCTAAATAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAAATCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAGAACCTGCCTCACCAGCAGGTTTTTTTATTTACtg > 1:193186/1‑251 (MQ=255) gAACTACAGAATATATTCAACCAAGAAATAGAATAATATACTCTAAATAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAGAACCTGCCTCACCAGCAGGt > 2:94013/1‑225 (MQ=255) gAACTACAGAATATATTCAACCAAGAAATAGAATAATATACTCTAAATAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAGAACCTGCCTCACCAGCAGGt < 1:94013/225‑1 (MQ=255) aaCTACAGAATATATTCAACCAAGAAATAGAATAATATACTCTAAATAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAAATCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCTTGAAAATAGTAAATAAAAGAACCTGCCTCACCAGCAGGTTTTTTTATTTACTGTGATCTGCTTTcc > 1:324926/1‑251 (MQ=255) ccAAGAAATAGAATAATATACTCTAAATAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAAATCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAGAACCTGCCTCACCAGCAGGTTTTTTTATTTACTGTGATCTGCTTTCCAGATATTTTTCGCTCAaac > 1:181192/1‑251 (MQ=255) ataCTCTAAATAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAAATCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAGAACCTGCCTCACCAGCAGGTTTTTTTATTTACTGTGATCTGCTTTCCAGATATTTTTCGCTCAAACAACTAATGCGCCAAAc < 1:149175/250‑1 (MQ=255) aTTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAAATCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAGAACCTGCCTCACCAGCAGGTTTTTTTATTTACTGTGATCTGCTTTCCAGATATTTTTCGCTCAAACAACTAATGCGCCAAACATTTATTGCGCGTAAAat > 1:69812/1‑250 (MQ=255) aTTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATAAATCTCATTATCTTAATTGCAACGGGGGCCAGCCGTGGATATAAATCGTTCGTTGGAACACGCTGTTGCACAGGCTGTGTTGTTAGGCCTGAAAATAGTAAATAAAAGAACCTGCATCCCCAGCAGGTTTTTTTATTTACTGTGATCTGAATTACAGATATTTTTAGCTCAAAATACTAATGCGCCAAACCTTTATTCCGTGTaacat > 2:317290/1‑247 (MQ=255) tcgtcgaaaCGTCCCAATTGCCTGGATTATAAATCTCTGTATCTTAATTGCAACTGGGTCCAGCCGTTGTTATAAATCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGTCCTTAAAATAGTAAAAAAAAGAACCTGTCTCACCAGCAGGTTTTTTTATTTACTGTGATCTGCTTTCCAGATATTTTTCGCTCAAACAACTAATGCGCCAAACATTTATTGCGCGTAAAATATCGTTTAttt < 2:222850/243‑1 (MQ=255) acgccccAATGGCCTGGATTATAAATCTCATTACATTAATTGCAACTGGGTCCAGCCGTTGTTATAAATCGTTCGTTGGAACAAGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAGAACCTGCCTCACCAGCAGGTTTTTTTATTTACTGTGATCTGCTTTCCAGATATTTTTCGCTCAAACAACTAATGCGCCAAACATTTATTGCGCGTAAAATATCGTTTATTTCATTAATAc < 2:88988/247‑1 (MQ=255) cccAATGGCCTGGAATATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAAATCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAGAACCTGCCTCACCAGCAGGTTTTTTTCTTTACTGTGATCTGCTTTCCAGATATTTTTCGCTCAAACAACTAATGCGCCAAACATTTATTGCGCGTAAAATATAGTTTATTTCATTAATACAttt > 1:63956/1‑251 (MQ=255) ccAATGGCCCGGATTATAAATCTCATAATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAAATCGTTCGTTGGACCACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATCAAAGAACCTGCCTCACCAGCAGGTTTTTTTATTTACTGTGATCTGATTTCCAGATATTTTTAGCTCAAACAACTAATGCGCCAAACATTTATTGCGCGTAAAATATCGTTTATTTCATTAATaaatatc > 2:157077/1‑245 (MQ=255) cTGGATTATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAAATCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAGAACCTGCCTCACCAGCAGGTTTTTTTATTTACTGTGATCTGCTTTCCAGataatgagatttataatccag > 1:119904/1‑170 (MQ=255) ataAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAAATCGTTCGTTTGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAGAACCTGCCTCACCAGCAGGTTTTTTTATTTACTGTGATCTGCTTTCCAGATATTTTTCGCTCAAACAACTAATGCGCCAAACATTTATTGCGCGTAAAATATCGTTTATTTCATTAATACATTTCAGGGATGAATATATg < 1:185452/251‑1 (MQ=255) cAGCCGTGATTATAAATCGTTCGTTGGAACACGATGTTGCACAGGCTGGGGTGTTAGGCCTGAAAATAGTAAATACAAGAAACTGCCTCACCCGCAGGATTTTTTATTTACTGTGATCTGCTTTCCAGATATTTTTCGGTACAACAACTAATGAGCCAAACATTTATTGCGCGAAAAATAGCGTTTTTTTAATTAATACATTTCAGGGATGAATATATGTCACCGCAGAATAATCATCTGCAGCGTCCgac > 2:88302/1‑249 (MQ=255) accGTGGTTATAATGCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGGTAGGACTGAACATAGGAAATAAAAGCACCTGCCTCACCAGCAAGTTTTTTTATTTACTGTGATCTGGTTTCCACATATTTTTCACTCAAACAAATATTGCGCCAAACAGTTTTTGCGCGTTAAATATGGTTTTTTTCCTTAATACATTTCAGGGTTGGATATATGACACCGCAGAAAAATCATCGGCAGCGTCCgac > 2:283868/2‑247 (MQ=255) | GACCCGCTAATAAATGATGCGTTGATTTATATAAGAGATGAGTGTATTGATGAGCGGAAATTACGAGGTGAATCACCTGAAACTGTAATAGCAATTTTTAATCGTGAACTACAGAATATATTCAACCAAGAAATAGAATAATATACTCTAAATAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAGAACCTGCCTCACCAGCAGGTTTTTTTATTTACTGTGATCTGCTTTCCAGATATTTTTCGCTCAAACAACTAATGCGCCAAACATTTATTGCGCGTAAAATATCGTTTATTTCATTAATACATTTCAGGGATGAATATATGTCACCGCAGAATAATCATCTGCAGCGTCCGCC > NC_000913/2204149‑2204630 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |