| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,375,737 | G→A | A259T (GCC→ACC) | ycjQ → | D‑guloside 3‑dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,375,737 | 0 | G | A | 94.1% | 87.7 / ‑3.7 | 35 | A259T (GCC→ACC) | ycjQ | D‑guloside 3‑dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (13/19); total (14/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.92e-01 | |||||||||||
CGCTGGCGCTTCTGTGGTGATTGGCGTCGATCCTATCGCCCATCGCTGTGATATTGCCCGTCGCCACGGCGCGGATTTCTGCCTTAACCCCATCGGCACTGATGTAGGTAAAGAGATCAAAACGCTGACCGGCAAGCAGGGTGCCGATGTGATTATCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTGCCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCGTGCAGCGAACCGAACCCGGATTATCCGCGCTGGAGCCGCAAGCGTATTGAAGAAACCTGTTGGGAACTGCTGATGAACGGTTATCTCAATTGCGAAGATTTAATCGACCCGGTGGTGACCTTTGCCAATAGCCCGGAAAGCTATATGCAGTATGTCGACCAGCATCCGG > NC_000913/1375499‑1375983 | cgcTGGCGCTTCTGTGGTGATTGGCGTCGATCCTATCGCCCATCGCTGTGATATTGCCCGTCGCCACGGCGCGGATTTCTGCCTTAACCCCATCGGCACTGATGTAGGTAAAGAGATCAAAACGCTGACCGGCAAGCAGGGTGCCGATGTGATTATCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTg < 1:312392/251‑1 (MQ=255) ggCGCTTCTGTGGTGATTGGCGTCGATCCTATCGCCCATCGCTGTGATATTGCCCGTCGCCACGGCGCGGATTTCTGCCTTAACCCCATCGGCACTGATGTAGGTAAAGAGATCAAAACGCTGACCGGCAAGCAGGGTGCCGATGTGATTATCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGa < 1:297965/251‑1 (MQ=255) cTTCTGTGGTGATTGGCGTCGATCCTATCGCCCATCGCTGTGATATTGCCCGTCGCCACGGCGCGGATTTCTGCCTTAACCCCATCGGCACTGATGTAGGTAAAGAGATCAAAACGCTGACCGGCAAGCAGGGTGCCGATGTGATTATCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTTCCGA‑AGGt > 1:64287/1‑251 (MQ=255) aTTGGCGTCGATCCTATCGCCCATCGCTGTGATATTGCCCGTCGCCACGGCGCGGATTTCTGCCTTAACCCCATCGGCACTGATGTAGGTAAAGAGATCAAAACGCTGACCGGCAAGCAGGGTGCCGATGTGATTATCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCgg < 1:9439/251‑1 (MQ=255) tGGCGTCGATCCTATCGCCCATCGCTGTGATATTGCCCGTCGCCACGGCGCGGATTTCTGCCTTAACCCCATCGGCACTGATGTAGGAAAAGAGATCAAAACGCTGACCGGCAAGAAGGGAGCCGAAGTGATTATCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCAACATCTCCTATGTAGCGGTTACCAAACCGGTTGGCGA‑AAGTATTAACCTCggcc > 1:56855/1‑249 (MQ=255) gCGTCGATCCTATCGCCCATCGCTGTGATATTGCCCGTCGCCACGGCGCGGATTTCTGCCTTAACCCCATCGGCACTGATGTAGGTAAAGAGATCAAAACGCTGACCGGCAAGCAGGGTGCCGATGTGATTATCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTTCCGA‑AGGTTTTAACCTCGGAcgc > 1:203024/1‑251 (MQ=255) gCTGTGATATTGCCCGTCGCCACGGCACGTATTTCTGCCTTAACCCCATCGGCACTGATGTAGGTAAAGAGAGCAATACGCTGACCGGCAAGCAGGGTGCTGATGTGATTATCCAAACCAGCAGCTACGCCGACGCGCTGCAATCTGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCCATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGcc < 1:328682/251‑1 (MQ=255) gtgATATTGCCCGTCGCCACGGCGCGGATTTCTGCCTTAACCCCATCGGCACTGATGTAGGTAAAGAGATCAAAACGCTGACCGGCAAGCAGGGTGCCGATGTGATTATCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGG‑AGGTTTTAACCTCGGACGCGAAGCGACTTTCAATAACGCCaa > 1:57691/1‑250 (MQ=255) atTGCCCGTCGCCACGGCGCGGATTTCTGCCTTAACCCCATCGGCACTGATGTAGGTAAAGAGATCAAAACGCTGACCGGCAAGCAGGGTGCCGATGTGATTATCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGt < 1:310085/251‑1 (MQ=255) ccGTCGCCACGGCGCGTATTTCTGCCTTAACCCCTCCGGCACTGATGGAGGTAAAGAGATCAAAACGCTGACCGGCAAGCAGGGTGCCTATGTGATTACCGAAATCAGCGGCTCCGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGtcttct < 2:203024/251‑1 (MQ=255) cgcgGATTTCTGCCTTAACCCCATCGGCACTGATGTAGGTAAAGAGATCAAAACGCTGACCGGCAAGCAGGGTGCCGATGTGATTATCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCGTGCa < 1:353564/251‑1 (MQ=255) ttCTGCCTTAACCCCATCGGCACTGATGTAGGTAAAGAGATCAAAACGCTGACCGGCAAGCAGGGTGCCGATGTGATTATCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCGTGCAGcgaac < 1:338977/250‑1 (MQ=255) tgctGTAGGTAAAGAGATCAAAACGCTGACCGGCAAGCAGGGTGCCGATGTGATTATCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCCCCCTCTCCTATATCGCGGTTACCAAGCCGTTTGCCGACAGGTTT‑AACCCCGCAAGCGGAGCGCATTTCCATAAAGACAAAATTGTCTTCTTCCGCGCGGGCAACGAACCCAACCCCGATCATCCCCGCTggg > 2:124856/4‑250 (MQ=255) tGATGTAGGTAAAGAGATCAAAACGCTGACCGGCAAGCAGGGTGCCGATGTGATTATCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCGTGCAGCGAACCGAACCCGGATTATCCGCGCTggg > 1:42419/1‑250 (MQ=255) ggTAAAGAGATCAAAACGCTGACCGGCAAGCAGGGTGCCGATGTGATGATCGAAACCAGCGGCTATGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCAGCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGAGTGCAGCGAACCGAACCCGGATTATCCGCGCTGGAGCCGCaa < 2:42419/251‑1 (MQ=255) gttaaGAGATCAAAACGCTGACCGGCAAGCTGGTTGCCGATGTGATTATCGAATCCATCGTCTACGCCGTCGCGCTGCAATCGGCGCTCCGGGGTCTGGCTTATGTCGGCACCATCTCCTATGTCGCTTTTACCAAGCCGTGTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCGTGCAGCGAACCGAACCCGGATTATCCGCGCTGGATCCGCAAg < 2:313434/248‑1 (MQ=255) aaGAGATCAAAACGCTGACCGTCAAGCAGGGTGCCGATGTGATTATCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCGTGCAGCGAACCGAACCCGGATTATCCGCGCTGGAGCCGCAAGCGt < 1:276752/251‑1 (MQ=255) gagaTCAAAACGCTGACCGGCAAGCAGGGTGCCGATGTGATTATCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCGTGCAGCGAACCGAAACCGGATTATCCGCGCTGGAGCCGCAAGCGTAt > 1:61489/1‑251 (MQ=255) ggaTCAAAACGCTGACCGGCAAGCAGGGTGCCGATGTGATTATCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCGTGCAGCGAACCGAACCCGGATTATCCGCGCTGGAGCCGCAAGCGTAtt < 1:266945/250‑1 (MQ=255) gACCGACAAGCAGGGTGCCGATGTGATTATCGAAACCAGCGGCGACGCCGACGCGCTGCAATCTGCGCTCTGCGGTCTGGCTTATGTCGTCACCATCTCCTATGTCGCGTTTTCCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGTACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCTTGCAGCTAACCGAACCCGGATTATCCGCTCTGTAGCCGCAAGCGTATTGAAGAAACCTg < 1:43704/249‑1 (MQ=255) aCCGGCAAGCAGGGTGCCGATGTGATTATCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCCCGCGCGTGCAGCGAACCGAACCCGGATTATCCGCGCTGGAGCCGCAAGCGTATTGAAGAAACCTGTTg > 1:199436/1‑251 (MQ=255) aaGCAGGGTGCCGATGTGATTATCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCGTGCAGCGAACCGAACCCGGATTATCCGCGCTGGAGCCGCAAGCGTATTGAAGAAACCTGTTGGGAAct < 1:298843/251‑1 (MQ=255) gCCGATGTGATTATCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGGTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCGTGCAGCGAACCGAACCCGGATTATCCGCGCTGGAGCCGCAAGCGGATTGAAGAAACCTGTTGGGAACTGCtgatga > 1:168343/1‑250 (MQ=255) aTCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCGTGCAGCGAACCGAACCCGGATTATCCGCGCTGGAGCCGCAAGCGTATTGAAGAAACCTGTTGGGAACTGCTGATGAACGGTTATCTCaa < 1:124856/251‑1 (MQ=255) gAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCGTGCAGCGAACCGAACCCGGATTATCCGCGCTGGAGCCGCAAGCGTATTGAAGAAACCTGTTGGGAACTGCTGATGAACGGTTATCTCAATTg < 1:366907/251‑1 (MQ=255) cAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCGTGCAGCGAACCGAACCCGGATTATCCGCGCTGGAGCCGCAAGCGTATTGAAGAAACCTGTTGGGAACTGCTGATGAACGGTTATCTCAATTGCGAAg < 1:261927/251‑1 (MQ=255) aGCGGTTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCGTGCAGCGAACCGAACCCGGATTATCCGCGCTGGAGCCGCAAGCGTATTGAAGAAACCTGTTGGGAACTGCTGATGAACGGTTATCTCAATTGCGAAGa < 1:159656/251‑1 (MQ=255) gACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCGAAATTGTCTTCTCTCGCGCGTGCAGCGAACCGAACCCGGATTATCCGCGCTGGCGCCGCAAGCGTATTGAAGAAACCTGTTGGGAACTGCTGATGAACGGTTATCTCAATTGCGAAGATTTAATCGAccc > 1:7713/1‑251 (MQ=255) ccgcgggcttggtgagggcggcACCATCTCCTATGGCGCGTTTGCCAAGCCGGTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGACAAAAGTGTCTGCTCTCGCGCGTGCAGCGAACCGAACCCGGATTATCCGCGCTGGAGCCGCAAGCGTATTGAAGAAACCTGTTGGGAACTGCTGATGAACGGTTATCTCAATTGCGAAGATTTAATCGACCCGGTGTTGACATTTGCCAAt < 2:249656/234‑1 (MQ=255) ggcggcACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCGTGCAGCGAACCGAACCCGGATTATCCGCGCTGGAGCCGCAAGCGTATTGAAGAAACCTGTTGGGAACTGCTGATGAACGGTTATCTCAATTGCGAAGATTTAATCGACCCGGTGGTGACCTTTGCCAATAGCCCGGAAAGCtata < 1:273401/250‑1 (MQ=255) gcACCATCTCCTATGTCGCGTTTGCCAAGCCGTTTGCCGA‑ATGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCGTGCAGCGAACCGAACCCGGATTATCCGCGCTGGAGCCGCAAGCGTATTGAAGAAACCTGTTGGGAACTGCTGATGAACGGTTATCTCAATTGCGAAGATTTAATCGACCCGGTGGTGACCTTTGCCAATAGCCCGGAAAGCTATATGc > 1:162104/1‑249 (MQ=255) gcACCATCTCCTATGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTAGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCGTGCAGCGAACAGAAACCGGATTATCCGCGCTGGAGCCGCAAGCGTATTGAAGAAACCTGTTGGGAACTGCTGATGAACGGTTATCTCAATTGCGACGATTTAATCGACCCGGTGGTGACCTTTGCCAATAGCACGGAAAGCTATATGc > 1:369187/1‑249 (MQ=255) ccATCTCCTAGGTCGCGTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCGTGCAGCGAACCGAACCCGGATTATCCGCGCTGGAGCCGCAAGCGTATTGAAGAAACCTGTTGGGAACTGCTGATGAACGGTTATCTCAATTGCGAAGATTTAATCGACCCGGTGGTGACCTTTGCCAATAGCCCGGAAAGCTATATGCAGTAt < 1:46709/251‑1 (MQ=255) tATGTCGCGTTTACCAAGCCGTTTGCCGC‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCGTGCAGCGAACCGAACCCGGATTATCCGCGCTGGAGCCGCAAGCGTATTGAAGAAACCTGTTGGGAACTGCTGCTGAACGGTTATCTCAATTGCGAAGCTTTAATCGACCCGGTGGTGACCTTTGCCAATAGCCCGGAAAGCTATATGCAGTATGTCGAcc > 2:81081/1‑250 (MQ=255) gTTTACCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTATCTCGCGCGAGCAGCGAACCGAACCCGGATTATCCGCGCTGGAGCCGCAAGCGTATTGCAGAAACGTGTTGGGACATGCTGATGAACGGTTATATCAATTGCGAAGATTTAATCGACCCGATGGAGACCTTTGCCAATAGCCCGGAAAGCTATATGCAGTATGTCGACCAGCATCCgg > 1:265322/1‑251 (MQ=255) | CGCTGGCGCTTCTGTGGTGATTGGCGTCGATCCTATCGCCCATCGCTGTGATATTGCCCGTCGCCACGGCGCGGATTTCTGCCTTAACCCCATCGGCACTGATGTAGGTAAAGAGATCAAAACGCTGACCGGCAAGCAGGGTGCCGATGTGATTATCGAAACCAGCGGCTACGCCGACGCGCTGCAATCGGCGCTCCGCGGTCTGGCTTATGGCGGCACCATCTCCTATGTCGCGTTTGCCAAGCCGTTTGCCGA‑AGGTTTTAACCTCGGACGCGAAGCGCATTTCAATAACGCCAAAATTGTCTTCTCTCGCGCGTGCAGCGAACCGAACCCGGATTATCCGCGCTGGAGCCGCAAGCGTATTGAAGAAACCTGTTGGGAACTGCTGATGAACGGTTATCTCAATTGCGAAGATTTAATCGACCCGGTGGTGACCTTTGCCAATAGCCCGGAAAGCTATATGCAGTATGTCGACCAGCATCCGG > NC_000913/1375499‑1375983 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |