| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,341,542 | G→A | A329T (GCG→ACG) | lapB → | lipopolysaccharide assembly protein B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,341,542 | 0 | G | A | 91.3% | 64.4 / NA | 23 | A329T (GCG→ACG) | lapB | lipopolysaccharide assembly protein B |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (9/12); minor base C (2/0); total (11/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGGTCAGCGAAACGCTGGAAATGTTGCAAACCTGCTATCAGCAGTTGGGTAAAACTGCCGAATGGGCAGAATTCCTGCAGCGTGCGGTGGAAGAGAACACCGGTGCCGATGCTGAATTGATGCTTGCTGATATCATCGAAGCGCGCGACGGTAGTGAGGCCGCACAGGTCTATATTACGCGCCAGCTTCAGCGTCATCCGACCATGCGTGTGTTCCATAAGTTAATGGATTACCACTTAAATGAAGCGGAAGAAGGGCGTGCCAAAGAGAGCCTGATGGTGCTGCGTGACAT‑GGTTGGCGAGAAGGTACGTAGTAAGCCTCGTTATCGTTGCCAGAAATGTGGTTTTACCGCATACACCCTCTACTGGCATTGTCCGTCTTGTCGGGCCTGGTCAACCATTAAACCGATTCGCGGTCTTGATGGCCTGTAATTTTTAAAAAAAATCCGACTTTAGTTACAACATACTAATTATTAAT > NC_000913/1341297‑1341773 | gggtatgcgaactgcgggAAATGTTGCAAACCTGCTATCGTCAGTTGGGTAAAACTGCCGAATTGGCAGAATTCCTGCATCGTGAGGTGGAAGAGAACCCCGGTGCCGATGCTGAATTGATGCCTGCTGATATCATCGAAGCGCGCGACGGTAGTGAGGCCGCACAGGTCTATATTATGGGCCTGCTTCAGCGTCATCCGACCATGCGTGTGTTCCATAATTTAATGGATTACCACGTATATGAAACGgaa < 2:55349/235‑1 (MQ=255) ggTCAGCGAAACGCTGGAAATGTTGCAAAACTGCTATCAGCAGTTGGGTAAAACTGCCGAATGGGCAGAATTCCTGCAGCGTGCGGTGGAAGAGAACACCGGTGCCGATGCTGAATTGATGCTTGCTGATATCATCGAAGCGCGCGACGGTAGTGAGGCCGCACAGGTCTATATTACGCGCCAGCTTCAGCGTCATCCGACCATGCGTGTGTTCCATAAGTTAATGGATTACCACTTAAATGAAACGga > 1:84112/1‑249 (MQ=255) gCTGGAAATGTTGCAAACCTGCTATCAGCAGTTGGGTAAAACTGCCGAATGGGCAGAATTCCTGCAGCGTGCGGTGGAAGAGAACACCGGTGCCGATGCTGAATTGATGCTTGCTGATATCATCGAAGCGCGCGACGGTAGTGAGGCCGCACAGGTCTATATTACGCGCCAGCTTCAGCGTCATCCGACCATGCGTGTGTTCCATAAGTTAATGGATTACCACTTAAATGAAACGGAAGAAGGGCGTGCCa < 1:238974/251‑1 (MQ=255) ggAAATGTTGCAAACCTGCTATCAGCAGTTGGGTAAAACTGCCGAATGGGCAGAATTCCTGCAGCGTGCGGTGGAAGAGAACACCGGTGCCGATGCTGAATTGATGCTTGCTGATATCATCGAAGCGCGCGACGGTAGTGAGGCCGCACAGGTCTATATTACGCGCCAGCTTCAGCGTCATCCGACCATGCGTGTGTTCCATAAGTTAATGGATTACCACTTAAATGAAACGGAAGAAGGGCGTGCCaaa > 1:95759/1‑250 (MQ=255) ggAAATGTGGCAAACCTGCTATCAGTAGGTGGGTAAATCTGCCGAATGGGCAGAATTCCTGCAGCGTGCGGTGGAAGAGAACATCGGTGCCGATGCTGAATTGATGCTTGCGGATATCATCGAAGCGCGCGACGGTAGTGATGGCGCACAGGTCTATATTGCGCGCCAGCTTCAGCGTCAGCCGACCATGCGTGTGTTCCATAAGTTAATGGATTACCACTTAAATGAAACGGAAGAAGGGCGTGCCAAag < 1:248049/251‑1 (MQ=255) aTGTTGCAAACCTGCTATCAGCAGGTGGGTAAAACTGCCGAATGGGCAGAATTCCTGCAGCGTGCGGTGGAAGAGAACACCGGTGCCGATGCTGAATTGATGCTTGCTGATATCATCGAAGCGCGCGACGGTAGTGAGGCCGCACAGGTCTATATTACGCGCCAGCTTCAGCGTCATCCGACCATGCGTGTGTTCCATAAGTTAATGGATTACCACTTAAATGAAACGGAAGAAGGGCGTGCCAAagagag < 2:90094/251‑1 (MQ=255) agTTGGGTAAAACTGCCGAATGGGCAGAATTCCTGCAGCGTGCGGTGGAAGAGAACACCGGTGCCGATGCTGAATTGATGCTTGCTGATATCATCGAAGCGCGCGACGGTAGTGAGGCCGCACAGGTCTATATTACGCGCCAGCTTCAGCGTCATCCGACCATGCGTGTGTTCCATAAGTTAATGGATTACCACTTAAATGAAACGGAAGAAGGGCGTGCCAAAGAGAGCCTGATGGTGCTGCGTGACAT‑g > 1:272560/1‑251 (MQ=255) ccTGCAGCGTGCGGTGGAAGAGAACACCGGTGCCGATGCTGAATTGATGCTTGCTGATATCATCGAAGCGCGCGACGGTAGTGAGGCCGCACAGGTCTATATTACGCGCCAGCTTCAGCGTCATCCGACCATGCGTGTGTTCCATAAGTTAATGGATTACCACTGAAATGAAACGGAAGAAGGGCGTGCCAACGAGAGCCTGATGGTGCTGCGTG‑CATTGGTTGAAGGGAAGGTACGTAGTAAGCCTAGtt > 2:233852/1‑251 (MQ=255) gTGGAAGAGAACACCGGTGCCGATGCTGAATTGATGCTTGCTGATATCATCGAAGCGCGCGACGGTAGTGAGGCCGCACAGGTCTATATTACGCGCCAGCTTCAGCGTCATCCGACCATGCGTGTGTTCCATAAGTTAATGGATTACCACTTAAATGAAACGGAAGAAGGGCGTGCCAAAGAGAGCCTGATGGTGCTGCGTGACAT‑GGTTGGCGAGAAGGTACGTAGTAAGCCTCGTTATCGTTGCCAGa > 1:75154/1‑250 (MQ=255) cacCGGTGCCGATGCTGAATTGATGCTTGCTGATATCATCGAAGCGCGCGACGGTAGTGAGGCCGCACAGGTCTATATTACGCGCCAGCTTCAGCGTCATCCGACCATGCGTGTGTTCCATAAGTTAATGGATTACCACTTAAATGAAACGGAAGAAGGGCGTGCCAAAGAGAGCCTGATGGTGCTGCGTGACAT‑GGTTGGCGAGAAGGTACGTAGTAAGCCTCGTTATCGt < 1:304820/232‑1 (MQ=255) cacCGGTGCCGATGCTGAATTGATGCTTGCTGATATCATCGAAGCGCGCGACGGTAGTGAGGCCGCACAGGTCTATATTACGCGCCAACTTCAGCGTCATCCGACCATGCGTGTGTTCCATAAGTTAATGGATTACCACTTAAATGAAACGGAAGAAGGGCGTGCCAAAGAGAGCCTGATGGTGCTGCGTGACAT‑GGTTGGCGAGAAGGTACGTAGTAAGCCTCGTTATCGt > 2:304820/1‑232 (MQ=255) cGAAGCGCGCGACGGTAGTGAGGCCGCACAGGTCTATATTACGCGCCAGCTTCAGCGTCATCCGACCATGCGTGTGTTCCATAAGTTAATGGATTACCACTTAAATGAAACGGAAGAAGGGCGTGCCAAAGAGAGCCTGATGGTGCTGCGTGACAT‑GGTTGGCGAGAAGGTACGTAGTAAGCCTCGTTATCGTTGCCAGAAATGTGGTTTTACCGCATACACCCTCTACTGGCATTGTCCGTCTTGTCggg < 1:329449/251‑1 (MQ=255) cgcgcgACGGTAGTGAGGCCGCACAGGTCTATATTACGCGCCAGCTTCAGCGTCATCCGACCATGCGTGTGTTCCATAAGTTAATGGATTACCACTTAAATGAACCGGAAGAAGGGCGTGCCAAAGAGAGCCTGATGGTGCTGCGTGACAT‑GGTTGGCGAGAAGGTACGTAGTAAGCCTCGTTATCGTTGCCAGAAATGTGGTTTTACCGCATACACCCTCTACTGGCATTGTCCGTCTTGTCGGGCCTgg > 2:223073/1‑251 (MQ=255) aGGCCGCACAGGTCTATATTACGCGCCAGCTTCAGCGTCATCCGACCATGCGTGTGTTCCATAAGTTAATGGATTACCACTTAAATGAAACGGAAGAAGGGCGTGCCAAAGAGAGCCTGATGGTGCTGCGTGACAT‑GGTTGGCGAGAAGGTACGTAGTAAGCCTCGTTATCGTTGCCAGAAATGTGGTTTTACCGCATACACCCTCTACTGGCATTGTCCGTCTTGTCGGGCCTGGTCAACCATTAAACCg < 1:233852/251‑1 (MQ=255) cGCACAGGTCTATATTACGCGCCAGCTTCAGCGTCATCCGACCATGCGTGTGTTCCATAAGTTAATGGATTACCACTTAAATGAAACGGAAGAAGGGCGTGCCAAAGAGAGCCTGATGGTGCTGCGTGACAT‑GGTTGGCGAGAAGGTACGTAGTAAGCCTCGTTATCGTTGCCAGAAATGTGGTTTTACCGCATACACCCTCTACTGGCATTGTCCGTCTTGTCGGGCCTGGTCAACCATTAAACCGATTc < 1:254570/251‑1 (MQ=255) atatTACGCGCCAGCTTCAGCGTCATCCGACCATGCGTGTGTTCCATAAGTTAATGGATTACCACTTAAATGAAACGGAAGAAGGGCGTGCCAAAGAGAGCCTGATGGTGCTGCGTGACAT‑GGTTGGCGAGAAGGTACGTAGTAAGCCTCGTTATCGTTGCCAGAAATGTGGTTTTACCGCATACACCCTCTACTGGCATTGTCCGTCTTGTCGGGCCTGGTCAACCATTAAACCGATTCGCGGTCTTGAt < 1:223073/251‑1 (MQ=255) gTCATCCGACCATGCGTGTGTTCCATAAGTTAATGGATTACCACTTAAATGAAACGGAAGAAGGGCGTGCCAAAGAGAGCCTGATGGTGCTGCGTGACAT‑GGTTGGCGAGAAGGTACGTAGTAAGCCTCGTTATCGTTGCCAGAAATGTGGTTTTACCGCATACACCCTCTACTGGCATTGTCCGTCTTGTCGGGCCTGGTCAACCATTAAACCGATTCGCGGTCTTGATGGCCTGTAATTTTTaaaaaa > 1:1573/1‑250 (MQ=255) ccGACCATGCGTGGTTTACATAAGTGAATGGATTACCACTTAAAGGAAACGGAATAAGGGCGTTCCAAAGAGAGCCTGATGGTTCTGCGTGACAT‑GGTTGGCGAGAAGGTACGTAGTAAGCCTCGTTATCGTTGCCAGAAAGGTGGTTTTACCGCATACACCCGCGACTGGCATTGTCCGTCTTGTCGGGCCTGGTCAACCAGTAAACCGATTCGCGGTCTTGATGGCCGGTAATTGTTAAAAAAAATCCg < 2:84112/251‑1 (MQ=255) taTGCGTGTGTTCCATAAGTAATTGGATTACCACTTAAATGAACCGGAAGAAGGGCGTGCCAAAGAGAGCCTGATGGAGATGCGTGACAT‑GGTTGACGAGAAGGAAAGTAGTAAGCCTCGATATCGTTGACAGAAATGTGGTTTTACCGAATACCACCTCTACTGGCATTGTAAGTCGTGTCGGGCCTGATCAACCATTAAACAGATTCGCGGATTTGATGGCCTGTAATTTTTACCAAACAACCGACttt > 2:220131/2‑251 (MQ=255) tCCATAAGTTAATGGATTACCACTTAAATGAAACGGAAGAAGGGCGTGCCAAAGAGAGCCTGATGGTGCTGCGTGACAT‑GGTTGGCGAGAAGGTACGTAGTAAGCCTCGTTATCGTTGCCAGAAATGTGGTTTTACCGCATACACCCTCTACTGGCATTGTCCGTCTTGTCGGGCCTGGTCAACCATTAAACCGATTCGCGGTCTTGATGGCCTGTAATTTTTAAAAAAAATCCGACTTTAGTTACAACAt > 1:244304/1‑251 (MQ=255) ggATTACCACTTAAATGAAACGGAAGAAGGGCGTGCCAAAGAGAGCCTGATGGTGCTGCGTGACAT‑GGTTGGCGAGAAGGTACGTAGTAAGCCTCGTTATCGTTGCCAGAAATGTGGTTTTACCGCATACACCCTCTACTGGCATTGTCCGTCTTGTCGGGCCTGGTCAACCATTAAACCGATTCGCGGTCTTGATGGCCTGTAATTTTTAAAAAAAATCCGACTTTAGTTACAACAGACTAATTATTAAt < 1:312450/251‑1 (MQ=255) gATTACCACTTAAATGAAACGGAAGAAGGGCGTGCCAAAGAGAGCCTGATGGTGCTGCGTGACAT‑GGTTGGCGAGAAGGTACGTAGTAAGCCTCGTTATCGTTGCCAg > 1:375730/1‑108 (MQ=255) gATTACCACTTAAATGAAACGGAAGAAGGGCGTGCCAAAGAGAGCCTGATGGTGCTGCGTGACAT‑GGTTGGCGAGAAGGTACGTAGTAAGCCGCGTTATCGTTGCCAg < 2:375730/108‑1 (MQ=255) | TGGTCAGCGAAACGCTGGAAATGTTGCAAACCTGCTATCAGCAGTTGGGTAAAACTGCCGAATGGGCAGAATTCCTGCAGCGTGCGGTGGAAGAGAACACCGGTGCCGATGCTGAATTGATGCTTGCTGATATCATCGAAGCGCGCGACGGTAGTGAGGCCGCACAGGTCTATATTACGCGCCAGCTTCAGCGTCATCCGACCATGCGTGTGTTCCATAAGTTAATGGATTACCACTTAAATGAAGCGGAAGAAGGGCGTGCCAAAGAGAGCCTGATGGTGCTGCGTGACAT‑GGTTGGCGAGAAGGTACGTAGTAAGCCTCGTTATCGTTGCCAGAAATGTGGTTTTACCGCATACACCCTCTACTGGCATTGTCCGTCTTGTCGGGCCTGGTCAACCATTAAACCGATTCGCGGTCTTGATGGCCTGTAATTTTTAAAAAAAATCCGACTTTAGTTACAACATACTAATTATTAAT > NC_000913/1341297‑1341773 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |