| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,252,059 | C→T | P332S (CCG→TCG) | dhaR → | DNA‑binding transcriptional dual regulator DhaR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,252,059 | 0 | C | T | 91.3% | 46.7 / NA | 24 | P332S (CCG→TCG) | dhaR | DNA‑binding transcriptional dual regulator DhaR |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (12/9); minor base G (0/2); total (13/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCTTAACGTTACCCGCCGTATTGCAACAAGCAATAAAACAGGCACATCCGCTCAAACACGTAGAAGCAACCTTTGAAAGCCAGCACCAGTTTATTGATGCGGTGATAACCCTTAAACCGATAATAGAAACGCAGGGAACCAGCTTTATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCCACAGGACGATCCGCAAACCCGCCGCTTGATTCATTTTGGTCGCCAGGCGGCGCGCAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTGCAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGAAAATGGCCGTC > NC_000913/1251817‑1252290 | tctTAACGTTACCCGCCGTATTGCAACAAGCAATAAAACAGGCACATCCGCTCAAACACGTAGAAGCAACCTTTGAAAGCCAGCACCAGTTTATTGATGCGGTGATAACCCTTAAACCGATAATAGAAACGCAGGGAACCAGCTTTATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCCACAGGACGATTCGCAAAcc > 1:308935/1‑251 (MQ=255) aaGCAATAAAACAGGCACATCCGCTCAAACACGTAGAAGCAACCTTTGAAAGCCAGCACCAGTTTATTGATGCGGTGATAACCCTTAAACCGATAATAGAAACGCAGGGAACCAGCTTTATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCCACAGGACGATTCGCAAACCCGCCGCTTGATTCATTTTGGTCGCCAg < 1:92511/251‑1 (MQ=255) aaacagaccacgcccctaaaaCACGAAGAAGCACCCTTTAAACTCCAGCTCCAGTTTATTAGTGCGGTGATACCCTTTAACCCGTAAATAGACCCTGAGGAAACCAGCTTTATTTTGTTGCCCCATCCTGGGGAACAGAGGCGGCTTTTGATGCCCAGTCATTTAGAAAAAGTCACCTTTCCCTGCGCTCTTAGGCCACAGGCCATTGCGCAACCCCGCCGCTTGATTCATTTTGGTCGCCAGGCGgcgcg < 2:326566/233‑1 (MQ=255) acacccGCTCAAACACGTAGAAGCAACCTTTGAAAGCCAGCACCAGTTTATTGATGCGGTGATAACCCTTAAACCGATAATAAAAACGCAGGGAACCAGCTTTATTTTGTTGCTCCACCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCCACAGGACGATTCGCAAACCCGCCGCTTGATTCATTTTGGTCGCCAGGCGGCGCGCAGTAGCt < 1:66168/247‑1 (MQ=255) acAAACACGTAGAAGCAACTTTTGAAAGCAAGCACCAGTTTATTGTTGCGGTAATACCCCTTAAACCGATAATAGAAACGCAGGGAACCAGCTTTATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTAAATTAGGAAAAGTCAGCCATCCCTTCGCTCATAGGCCACAGGACGATTCGCAAACCCGCCGCTTGATTCATTTTGGTCGCCAGGCGGCGCGCAGTAGCTTtcctgtc < 1:152451/250‑1 (MQ=255) cacGTAGAAGCACCCTTGAAAAGCCAGCACCAGTTTATTGATGCGGTGATACCCCTTAACCCGATAATAGAAACGCAGGGAACCAGCTTTATTTGTTTGCTCCATCTGGTGGAACAGATGCGGCAGTTGATGACCAGTAAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCCACAGGACGATTCGCAAACCCGCCGCTTGATTCATTTTGGTCGCCAGGCGGCGCGCAGTAGCCTTCCTGTCCTGCt < 1:74838/251‑1 (MQ=255) gTAGAAGCAACCTTTGAAAGCCAGCACCAGTTTATTGATGCGGTGATAACCCTTAAACCGATAATAGAAACGCAGGGAACCAGCTTTATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCCACAGGACGATTCGCAAACCCGCCGCTTGATTCATTTTGGTCGCCAGGCGGCGCGCAGTAGCTTTCCTGTCCTGCTTtg > 1:104760/1‑251 (MQ=255) aaGCAACCTTTGAAAGCCACCACCAGTTTATTGATGCGGTGATACCCCTTAAACCGATAATAGAAACTGGGGTACCCAGTTTTATTTTGTTGCTCCATCCGGTGGAACAGAGGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCAGCCCTCCTCTCATAGGCCACAGGCCGATTCGCAAACCCGCCGCTTGATTCATTTTGGTCGCCAGGCGGCGCGCAGTAGCTTTCCTGTCCTGCTTTGTGga < 1:229264/251‑1 (MQ=255) tGAAAGCCAGCAACAGATTATTGCTGCGGAGCTAACCCTTAAACCGATCATAGAAACGCAGAGAACCAGCTTTATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCATACAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCCAAAGGACGATTCGCAAACCCGCCGCTTGATTCATTTTGGTCGCCAGGCGGCGCGTAGTAGCTTTCCTCACCTCATTTGTGGAGAAGAGGGCg > 2:255485/1‑251 (MQ=255) tttAGTGATGCGGTGATAACCCTTAAACCGATAATAGAAACGCAGGGAACCAGCTTTATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGGAAAGTCAGCCATACCTTCGCTCATATGCCACAGGACGATTCGCAAACCCGCCGCTTGATTCATTTTGGTCg > 1:380558/1‑185 (MQ=255) ttATTGATGCGGTGATAACCCTTAAACCGATAATAGAAACGCAGGGAACCAGCTTTATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATTCCACAGGACGATACGCAAACCCGCCGCTTGATTCATTTTGGTCGCCAGGCAGCGCGCAGTAGCTTTCCTGCCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTgat > 1:142725/1‑248 (MQ=255) agATAACCATTAAACCGATAAAAAAAACGCAGGGAACATGCTTTATTTTTTGGCCCAATCTTGTGGAACAGATGCGGCTTTTGATGACCTTTCAATTAGGAAAAGTCAGCTATACCTCCGCTCATATGCCCCAGAACGATTCGCAACCCCGCCGCTTGATTCATTTTGGTCGCCAGGCGGCGCGCAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAAtt < 1:22697/250‑1 (MQ=255) tAAACCGATAATAGAAACGCAGAGAACCAGCTTTATTTTGTTGCTCCATCCTGTGGAAAAGATGCGGCAGTTGATGACCAGTCCATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCCACAGGCCGATTCGCAAACCCGCCGCTTGATTCATTTTGGTAGCCAGGCGGCGCGCAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGaa > 1:351580/1‑250 (MQ=255) aCCGATAATAGAAACGCAGGGAACCAGCTTTATTTTGTTGCTCCATCCTGGGGAACAGATGCGGCATTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGTTCATATGCCACAGGACGATTCGCAAACCCGCCGCTTGATTCATTTTGGTCGCCAGGCGGCGCGCAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAagcg < 1:108027/251‑1 (MQ=255) ataGAAACGCAGGGAACCAGCTTTATTTTGTTGCCCCATCCTGTGAAACAGATGCGGAAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCCACAGGACGATTCGCAACCCCGCCGCTTGATTCATTTTGGTCGCCAGGCGGCGCGCAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGtgc < 1:157607/251‑1 (MQ=255) aaGAAACGTAGGGACCCAGCTTTATTTTGTTGCTCCATCCTGGGAAACAGATGCGGCATTTGAGGACCAGCAAATTAGGAAAAGCAAGCCATACCTTCTCTAATAGGCCACAGGCCGATTCGCAAACCCGCCGCTTGATTCATTTTGGTCGCCAGGCGGCGCGCAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGtgct < 1:340074/250‑1 (MQ=255) gAAACGCAGGGAACCAGCTTTATTTTGTTGCTCCATCCTGTGGAACAGATGCGGAAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCCACAGGACGATTCGCAAACCCGCCGCTTGATTCATTTTGGTCGCCAGGCGGCGCGCAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGtgctgc > 1:353099/1‑251 (MQ=255) gAACCAGCTTTATTTTGTTGATCCATCCTGTGGAACAGATGCGGCCGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCCACAGGACGATTCGCAAACCCGCCGCTTGATTCAGTTTGGTCGCCAGGCGGCGAGCCGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAGTGAAAGCGAGAGTGATGCAGGTCCTtat > 2:355383/1‑251 (MQ=255) gtcgggtggataaGATGCGCCAGTGTATGCCCATTCAATTAGGAAAAGGCAGCCATACCTGCGCTCATAGGCCACAGGACGATGCGCAACCCCGCCGCTTGATTCATTTTGGTCGCCAGGCGGCGCGCAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATAAAAGCGAGCGTGCTGCAGGTCCTTATATCGCCGTCAATTGTGAGTTatat < 1:255485/239‑1 (MQ=255) gatgaCCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCCACATGACGATTCGCAAACCCGCCGCTTGATTCATTTTGGTCGCCAGGAGGCGCGCATTAGCTTTCCTGTCCTGCTTTGTGGAGAAGCGGGCGTGGTAACGGCACTGCTAAGTCATGCAATTCATAATGAAAGCGAGAGTGCTGCAAGTCCTTATATAACAGTCTATTGTGAGTTATCTggagaatctgcgtcggcggcaacat > 2:6912/1‑228 (MQ=255) aaTTAGGAAAAGTCAGCCATACCTTAGCTCATATGGCACAGGACGCTTCGCAAACCCGCCGCTTGATTCATTTTGGTCGCCAGGCGGCGCGCAGTAGCTTTCCTGTCCTGCTTTGTGGGGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTGCAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATtggt > 1:297234/1‑248 (MQ=255) aCCTTCGCTCATATGCCACAGGACGATTCGCAAACCCGCCGCTTGATTCATTTTGGTCGCCAGGCGGCGCGCAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTGCAGGTCCTTATATCGCCGTCATTTGTGAGTTATATGGTGATGCTGCGTTGGCGGAAGAATTTATTGGTGGCGCTCGCAAGGAAAATGaaa > 2:118843/1‑250 (MQ=255) tCGCTCATATGCCACAGGACGATTCGCAAACCCGCCGCTTGATTCATTTTGGTCGCCAGGCGGCGCGCAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTGCGGGTCCTTATATCGCCGTCCATTGTGAGTTATATGGTGATGCTGAGCTGGCGGAAGACTTTATGTATGGAGATAGCACGGACAAAGaaaaaggg > 2:290252/1‑247 (MQ=255) tCATATGCCACACGACGATTCCCAAACCCGCCGCTTGTTCCATTTAGGTCGCCAGACGGCGCGCAGCAGCTTTCCTGCCCTGCTTTGTGGAGAAGAGGGCGTGGCCAAGGCACTGCTAAGTCAGGCAATTGATAATGAAAGCGCGCGTGCGGCAGGACCTACTCTCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAGTTTATTGAGGGCGGTCGCACGGTCAATGaacaggccagcc > 2:136255/1‑241 (MQ=255) | TCTTAACGTTACCCGCCGTATTGCAACAAGCAATAAAACAGGCACATCCGCTCAAACACGTAGAAGCAACCTTTGAAAGCCAGCACCAGTTTATTGATGCGGTGATAACCCTTAAACCGATAATAGAAACGCAGGGAACCAGCTTTATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCCACAGGACGATCCGCAAACCCGCCGCTTGATTCATTTTGGTCGCCAGGCGGCGCGCAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTGCAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGAAAATGGCCGTC > NC_000913/1251817‑1252290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |