| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,244,908 | C→T | L61L (CTG→TTG) | ymgE → | PF04226 family protein YmgE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,244,908 | 0 | C | T | 95.0% | 49.8 / ‑4.1 | 21 | L61L (CTG→TTG) | ymgE | PF04226 family protein YmgE |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (5/14); total (5/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.69e-01 | |||||||||||
TACTTAGAGCGTTGATGTAAGCATTTCTTGCGTCCGATTCATCGAAACGAGGGCCTGAACATGGGAATTATTGCCTGGATTATTTTTGACCTGATAGCCGGCATTATCGCCAAGCTAATCATGCCGGGGCGTGATGGTGGTGGATTTTTCCTGACCTGTATTCTCGGGATAGTCGGTGCGGTGGTCGGCGGCTGGCTGGCGACCATGTTTGGCATTGGCGGCTCCATCAGTGGTTTTAATCTGCACAGCTTCCTGGTGGCGGTGGTGGGAGCTATTCTC‑GTTCTGGGCATATTCCGCCTCCTGCGAAGAGAATAAGATTTTCATAAGGCGGATAGCGATACAGATGCCGCTATCCGCTTTCACATCAGAACGTATACTCGACACCTGCTTTACGGGTGAAAAAAATCAATATAG‑CACTTCGATATCCGATAAAGTCGGTTCCCGGTAACAACAACAGAATCC > NC_000913/1244668‑1245129 | taCTTAGAGCGTTGATGTAAGCATTTCTTGCGTCCGATTCATCGAAACGAGGGCCTGAACATGGGAATTATTGCCTGGATTATTTTTGACCTGATAGCCGGCATTATCGCCAAGCTAATCATGCCGGGGCGTGATGGTGGTGGATTTTTCCTGACCTGTATTCTCGGGATAGTCGGTGCGGTGGTCGGCGGCTGGCTGGCGACCATGTTTGGCATTGGCGGCTCCATCAGTGGTTTTAATTTGCACAGCtt > 1:122863/1‑251 (MQ=255) agCGTTGATGTAAGCATGTCTTGCGTCCGATTCATCGAAACGAGGGCCTGAACATGGGAATTATTGCCTGGATTATTTTTGACCTGATAGCCGGCATTATCGCCAAGCTAATCATGCCGGGGCGTGATGGTGGTGGATTTTTCCTGACCTGTATTCTCGGGATAGTCGGTGCGGTGGTCGGCGGCTGGCTGGCGACCATGTTTGGCATTGGCGGCTCCATCAGTGGTTTTAATTTGCACAGCTTCCtggtg < 1:267588/251‑1 (MQ=255) gTTGATGTAAGCACTGTGTGCGTGCTATGCATCGAAACGAGGGCTTGAACATGGGAATTATGGCCTTGAGTATTTGTGTCCTGAGAGCCGGCATTATCGCCAAGCTAATCATGCCGGGGCGTGATGGTGGTGGATTTGTCCTGACCTGTATTCTCGGGATAGGCGGTGCGGTGGTCGGCTGCTGGATGGCGACCATGTTTGGCATTGGCGGGTCCATCATTGGTTTTAATTTGCACAGCTTCCTGGTGGCg < 2:186005/251‑1 (MQ=255) aagtattgctggcttCCGATTAATCGAAACGCGTGCCTGAACATGGGAATTATTGCCTGGATTATTTTTGACCTGATAGCCGGCATTATCGCCAAGCTAATCATGCCGGGGAGTGATGGTGGTGGATTTTTCCTGACCTGTATTCTCGGGATAGTCGGTGCGGTGGTCGGCGGCTGGCTGGCGACCATGTTTGGCATTGGCGGCTCCATCAGTGGTTTTAATTTGCACAGCTTCCTGGTGGCGGtggtgg < 2:122863/236‑1 (MQ=255) tgctgccGATTCATCGAAACGAGGGCCTGAACATGGGAATTATTGCCTGGATTATTTTTGACCGGATAGCCGGCATTATCTCCAAGCTAATCATGCCGGGTCTTGATGGTGGGGGATTTTTCCTGACCTGTATTCTCGGGATAGTCGGTGCGGTGGTCGGCGGCTGGCTGGCGACCATGGTTGGCATTGGCGGCTCCATCAGTGGTTTTAATTTGCACAGCTTCCTGGTGGCGGTGGTGGGAGCTATtc < 2:320641/244‑1 (MQ=255) aaaCGAGGGCCCGAATATGGTAATGATTGCCTGGATTATTTTTGACCTGATAGCCGGCATGATAGTCAAGCTTATCATGCCGGGGCGTGATGGTGGTGGATTTTTCCTGACCTGTATTCTCGGTATAGTAGGGGCGGTGGTCGGCGGCTGGCTGGCGACCATGTTTGGCATTGGCGGCTCCATCAGTAGTTTTAATGTGCACAGCTTCCTGGTGGCGGTGGTGGGAGCTATTCTC‑GTTCTGGGCATATTcc < 2:78306/251‑1 (MQ=255) attattGCCTGGATTATTTTTGACCTGATAGCCGGCATTATCGCCAAGCTAATCATGCCGGGGCGTGATGGTGGTGGATTTTTCCTGACCTGTATTCTCGGGATAGTCGGTGCGGTGGTCGGCGGCTGGCTGGCGACCATGTTTGGCATTGGCGGCTCCATCAGTGGTTTTAATTTGCACAGCTTACTGGTGGCGGGGGGGGGAACTATTCTT‑GTTCTGGGCATATTCCGCCTCCTGCGGAGAGGATa > 1:293425/1‑248 (MQ=255) tattGCCTGGATTATTTTTGACCTGATAGCCGGCATTATCGCCAAGCTAATCATGCCGGGGCGTGATGGTGGTGGATTTTTCCTGACCTGTATTCTCGGGATAGTCGGTGCGGTGGTCGGCGGCTGGCTGGCGACCATGTTTGGCATTGGCGGCTCCATCAGTGGTTTTAATTTGCACAGCTTCCTGGTGGCGGTGGTGGGAGCTATTCTC‑GTTCTGGGCATATTCCGCCTCCTGCGAAGAGAATAAGAt < 1:323673/250‑1 (MQ=255) tGCCTGGATTATTTTTGACCTGATAGCCGGCATTATCGCCAAGCTCATCATGCCGGGGCGTGATGGTGGTGGATTTTTCCTGACCTGTATTCTCGGGATAGTCGGTGCGGTGGTCGGCGGCTGGCTGGCGACCATGTTTGGCATTGGCGGCTCCATCAGCGGTTTTAATTTGCACAGCTTCCTGGTGGCGGGGGTGGGAGCCTTTTTCTGTT‑TGGGCCTATTCCGCCTCCTGGGGAGAGAATAAGCttttt > 1:127858/1‑250 (MQ=255) gATTATTTTTGACCTGATAGCCGGCATTATCGCCAAGCTAATCATGCCGGGGCGTGATGGTGGTGGATTTTTCCTGACCTGTATTCTCGGGATAGTCGGTGCGGTGGTCGGCGGCTGGCTGGCGACCATGTTTGGCATTGGCGGCTCCATCAGTGGTTTTAATTTGCACAGCTTCCTGGTGGCGGTGGTGGGAGCTATTCTC‑GTTCTGGGCATATTCCGCCTCCTGCGAAGAGAATAAGATTTTCATAAgg < 1:108126/251‑1 (MQ=255) tttGACCTGATAGCCGGCATTATCGTCAAGCTAATCATGCCGGGGCGTGATGGTGGTGGATTTTTCCTGACCTGTATTCTCGGGATAGTCGGTGCGGTGGTCGGCGGCTGGCTGGCGACCATGTTTGGCATTGGCGGCTCCATCAGTGGTTTTAATTTGCACAGCTTCCTGGTGGCGGTGGTGGGAGCTATTCTC‑GTTCTGGGCATATTCCGCCTCCTGCGAAGAGAATAAGATTTTCATAAGGCGGATa < 1:221893/250‑1 (MQ=255) ttGACCTGATAGCCGGCATTATCGCCAAGCTAATCATGCCGGGGCGTGATGGTGGTGGATTTTTCCTGACCTGTATTCTCGGGATAGTCGGTGCGGTGGTCGGCGGCGGGCTGGCGACCATGTTTGGCATTGGCGGCTCCATCAGTGGTTTTAATTTGCACAGCTTCCTGGTGGCGGTGGTGGGAGCTATTCTC‑GTTCTGGGCATATTCCGCCTCCTGCGAAGAGAATAAGATTTTCATAAGGCGGATAg < 1:366514/250‑1 (MQ=255) gCCGGCATTATCGCCAAGCTAATCATGCCGGGGCGTGATGGTGGTGGATTTTTCCTGACCTGTATTCTCGGGATAGTCGGTGCGGTGGTCGGCGGCTGGCTGGCGACCATGTTTGGCATTGGCGGCTCCATCAGTGGTTTTAATTTGCACAGCTTCCTGGTGGCGGTGGTGGGAGCTATTCTC‑GTTCTGGGCATATTCCGCCTCCTGCGAAGAGAATAAGATTTTCATAAGGCGGATAGCGATACAGATGc < 1:266912/251‑1 (MQ=255) gtggAGTTTTCCTGACCGGTATGCTGTGGATAGTCTGTGCGGTGGTCGGCGGCGGGCTGGCGACCATGTTTGGCATTGGCGGCGCCATCAGTGGTTTTAATCTGCACAGCTTCCTGGTGTCGGTGGTGGGAGCTATTCTC‑GTGCTGGGCATATTCCGCCTTCTGCGAAGAGAATAAGATTTTCAGAAGGCGGATAGCGATACAGATGCCGCTATCCGCTTTCACATCAGAACGTATACTCGACACCTGCtt < 1:201299/251‑1 (MQ=255) tttCCTGACCTGTATTCTCGGGATAGTCGGTGCGGTGGTCGGCGGCTGGCTGGCGACCATGTTTGGCATTGGCGGCTCCATCAGTGTTTTTAATTTGCACAGCGTCCTGGTGGCGGTGGTGGGAGCTATTCTC‑GTTCTGGGCATATTCCGCCTCCTGCGAAGAGAATAAGATTTTCATAAGGCGGATAGCGATACAGAGGCCGCTATCCGCTTTCACATCAGAACGTATACTCGACACCTGCTTTACggg < 1:43730/250‑1 (MQ=255) ttCCTGACCTGTATTCTCGGGATAGTCGGTGCGGTGGTCGGCGGCTGGCTGGCGACCATGTTTGGCATTGGCGGCTCCATCAGAGGCTTTAATTTGCACAGCTTCCTGGTGGCGGTGGGGGGAGCTATTCTC‑GTTCTGGGCCTATTCCGCCTCCTGCGAAGAGAATAAGATTTTCATAAAGCGGATAGCGATACAGATGCCGCTATCCGCTTTCACATCCGGACGTATACTCGACACCTGCTTTAAggggg > 1:332082/1‑249 (MQ=255) tggctggcGACCATGTTTGGCATTGGCGGCTCCATCAGTGGTTTTAATTTGCACAGCTTCCTGGTGGCGGTGGTGGGGGCTATTCTC‑GTTCTTGGCATATTCCGCCTCCCGCGGAGAGAATAAGATTTTCATAAGGCGGATAGCGATAAAGATGCCGCTATCCGCTTTCACATCTGAACGTTTACTCGACACCCGCTTTACAGGTGAAAAAAATCAATATAGTCACT‑CTATATCCGAAAAAATCGGtgtcc > 2:131047/1‑247 (MQ=255) ggttgtctaCCATGTTTGGCATGGTCGGCTACGTAAGTGTTTTTAATTTGCAAAGCTGCCTGGTGGCTGGGGTGGGATATATGTTC‑GTTCGGGGCATATTCCGCCTCCTGCGAATAGTATATGATTTTCATAAGGCTGTTAGGGATACAGATGCCGCTATACGCGTTCACATCATAACGTCTACTCGACACCTGCTTTACGGGTGAAAAAAATCAATATAG‑CACTTCGATATCCGATCAAGCCGGTTcc < 2:146534/241‑1 (MQ=255) ggctggcGACCATGTTTGGCATTGGCGGCTCCATCAGTGGTTTTAATTTGCACAGCTGCCTGGTGGCGGTGGTGGGAGCTATTCTC‑GTTCTGGGCATATTCCGCCTCCTGCGAAGAGAATAAGATTTTCATAAGGCGGATAGCGATACAGATGCCGCTATCCGCTTTCACATCAGAACGTATACTCGACACCTGCTTTACGGGTGAAAAAAATCAATATAG‑CACTTCGATATCCGATAAAGTCGGTTccc < 1:179880/250‑1 (MQ=255) gTTTGGCATTGGCGGCTCCATCAGTGGTTTTAATTTGCACAGCTTCCTGGTGGCGGTGGTGGGAGCTATTCTC‑GTTCTGGGCATATTCCGCCTCCTGCGAAGAGAATAAGATTTTCATAAGGCGGATAGCGATACAGATGCCGCTATCCGCTTTCACATCAGAACGTATACTCGACACCTGCTTTACGGGTGAAAAAAATCAATATAG‑CACTTCGATATCCGATAAAGTCGGTTCCCGGTAacaacaaca < 1:163933/250‑1 (MQ=255) gCATTGGCGGCTCCATCAGTGGTTTTAATTTGCACAGCTTCCTGGTGGCGGTGGTGGGAGCTATTCTC‑GTTCTGGGCATATTCCGCCTCCTGCGAAGAGAATAAGATTTTCATAAGGCGGATAGCGATACAGATGCCGCTATCCGCTTTCACATCAGAACGTATACTCGACACCTGCTTTACGGGTGAAAAAAATCAATATAG‑CACTTCGATATCCGATAAAGTCGGTTCCCGGTAACAACAACAGAATcc < 1:78187/251‑1 (MQ=255) | TACTTAGAGCGTTGATGTAAGCATTTCTTGCGTCCGATTCATCGAAACGAGGGCCTGAACATGGGAATTATTGCCTGGATTATTTTTGACCTGATAGCCGGCATTATCGCCAAGCTAATCATGCCGGGGCGTGATGGTGGTGGATTTTTCCTGACCTGTATTCTCGGGATAGTCGGTGCGGTGGTCGGCGGCTGGCTGGCGACCATGTTTGGCATTGGCGGCTCCATCAGTGGTTTTAATCTGCACAGCTTCCTGGTGGCGGTGGTGGGAGCTATTCTC‑GTTCTGGGCATATTCCGCCTCCTGCGAAGAGAATAAGATTTTCATAAGGCGGATAGCGATACAGATGCCGCTATCCGCTTTCACATCAGAACGTATACTCGACACCTGCTTTACGGGTGAAAAAAATCAATATAG‑CACTTCGATATCCGATAAAGTCGGTTCCCGGTAACAACAACAGAATCC > NC_000913/1244668‑1245129 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |