| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,161,403 | G→A | A50V (GCC→GTC) | fhuE ← | ferric coprogen/ferric rhodotorulic acid outer membrane transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,161,403 | 0 | G | A | 95.2% | 49.9 / ‑6.0 | 21 | A50V (GCC→GTC) | fhuE | ferric coprogen/ferric rhodotorulic acid outer membrane transporter |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (7/13); total (7/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
ATATAGTTATCGATCTGGAATCCGCGGGAATAATAAAGAGCACGATCGGAATCCGCCTGACTTTTGCTGATCCCCAGCGTGTT‑TTCCATCACTTCGCCCAGCGTTTGTAACTGCTGATCTTCCATCCGCTGCTGGCTAACAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGG‑CTGAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCAGTGCTATGCAACCGGCAAGTAGTGACGGTTTGGTGATGGCTTGATATTGATTATCCCTGTTAAATTGTGTTGAAAGCATTTGAAATCTCTTGGTTTATGTTGTCGTCAGGCTCATGCCGGAGGAGGGTGATGAGCGATTATATTTAGTGTGCGAAT > NC_000913/1161160‑1161628 | atatAGTTATCGGTCTGGAATCCGCGGGAATAATAAAGAGCACGATCGGAATCCGCCTGACTTTTGCTGATCCCCAGCGTGTT‑TTCCATCACTTCGCCCAGCGTTTGTAACTGCTGCTCTTCCATCCGCTGCTGGCTAACAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGCGGAAGACGTTACACTGTAATCATTTTCGCCATCATCTGGAGCTGTGA‑CTGaaac > 2:227110/1‑249 (MQ=255) gATCTGGAATCCGCGGGAATAATAAAGAGCACGATCGGAATCCGCCTGACTTTTGCTGATCCCCAGCGTGTT‑TTCCATCACTTCGCCCAGCGTTTGTAACTGCTGATCTTCCATCCGCTGCTGGCTAACAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGA‑CTGAACCCTCAACAATc > 1:1161/1‑250 (MQ=255) gATCTGGAATACGCGGGCATAATAAAGAGCACGATCGGAATCCGCCTGACTTTTGCTGATCCCCAGCGTGTT‑TTCCATAACTTCGCCCAGCGTTTGTAACTGCTGATCTTCCATACGCTGCTGGCTAACAATAGTGACCGACTGAGGAATATCACGTTGCGTCATCTGCATTTTGGTACCCGCAGAGGCAGACGTTACGCTGTAATCATTTTCGCAATCATCTGGCGCTGTGA‑CTGAACACGCAACAATc > 2:350359/1‑250 (MQ=255) ggAATCCGCGGGAATAATAAAGAGCACGATCGGAATCCGCCTGACTTTTGCTGATCCCCAGCGTGTT‑TTCCATCACTTCGCCCAGCGTTTGTAACTGCTGATCTTCCATCCGCTGCTGGCTAACAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGA‑CTGAACCCTCAACAATCAcc < 1:227110/248‑1 (MQ=255) ccgtcTGATTTTTGCTGATCCCCATCG‑GTTATTCCTTCACTTCACCCAGCGTTTGTAACGGCTGTTCTTCCATCCGCTGCTGGATAACAATAGTGACCGTCTGAGGAATATCTCTGTGAGTCAGCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGTCATCAGCTGGAGCTGTGA‑CTGAACCCTCAACAATCACCGTTTCTGTAGTGGCTGGTGCAGCAAAAGCGGTAGAAgg < 2:251154/246‑1 (MQ=255) ccAGCGTGTT‑TTCCATCACTTCGCCCAGCGTTTGTAACTGCTGATCTTCCATCCGCTGCTGGCTAACAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGA‑CTGAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCAGTGCTATGCaa < 1:268574/251‑1 (MQ=255) ccAGCGTGTT‑TTCCATCACTTCGCCCAGCGTTTGTAACTGCTGATCTTCCATCCGCTGCTGGCTAACAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGA‑CTGAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCAGTGCTATGCaa < 1:350359/251‑1 (MQ=255) aGCGTGTT‑TTCCATCCATTCGCCCAGCGTTTGTAACTGCTGATCTTCCATCCGCTGCTGGCTAACAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGA‑CTGAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCAGTGCTATGCAAcc < 1:208580/251‑1 (MQ=255) tgttCCATTACTTCTCCCAGCGTGTTTAACGGCTGATCTTCCATCCGCGGCTGGCTAACAATAGTGACCGACTGAGGAATATCACGTTGGGTCAGTTGCATATGGGTACCCGCAGAGGTAGACGTGACGCTGTAATCAGTTTCGCCATCATCTGGAGCTGTGA‑CGGAACCCGCAACAATAACCGTTGCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCTGTGTTATGCAACCTGCaa < 2:154968/248‑1 (MQ=255) aTCACTTCGCCCAGCGTTTGTAACTGCTGATCTTCCATCCGCTGCTGGCTAACAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGA‑CTGAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGGAATAGTGCCAGTGCTATGCAACCGGCAAGTAGTg > 1:289451/1‑250 (MQ=255) cACTTCGCCCATCTGTTGTAACTGCGGATCGTCCCGCCGCTGCTGGCGACCATTAGTGACCTACTGAGGAAGATCACGTTTAGTCATCTGCAGTTTGGTTCCCGCAGAGGTATACGTTTCGCTGTAATCATTTTCGCCATCATCTGTAGCTGTGA‑CTGATCCCTCAACAATCACCGTTTCTTCAGTGGCTTGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCAGTGCTATGCAACCGGCAAGTAGTGACg < 2:296005/251‑1 (MQ=255) tAACTGCTGATCTTCCATCCGCTGCTGGCTAACAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGA‑CTGAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGTGCGGCAAAAGCGGCAGAAGGAAATAGGGCCAGTGCTATGCAACCGGCGAGTAGTGACGGTTTGGTGATGGCTTgtt > 1:845/1‑249 (MQ=255) ccATCCGCTGCTGGCTAACAATAGTGACCGTCTGATGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGA‑CTGAACCCTCAACAATCACCGTTTCGTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCa < 2:339949/192‑1 (MQ=255) ccATCCGCTGCTGGCTAACAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGA‑CTGAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCa > 1:339949/1‑192 (MQ=255) ctgctgGCTAACAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGA‑CTGAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGGGCAGCAAAAGCGGCAGAAGGTAATAGTGCCAGTGCTATGCAAACGGCAAGTAGTGACGGTTTGGTGATGGCTTGATATTGATTATCCCTGTTAAAtt > 1:357888/1‑251 (MQ=255) cAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGA‑CTGAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCAGTGCTATGCAACCGGCAAGTAGTGACGGTTTGGTGATGGCTTGATATTGATTATCCCTGTTAAATTGTGTTGAAAGc < 1:91670/251‑1 (MQ=255) atatCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGA‑CTGAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCAGTGCTATGCAACCGGCAAGTAGTGACGGTTTGGTGATGGCTTGATATTGATTATCCCTGTTAAATTGTGTTGAAAGCATTTGAAATCTCTTGGTTTa < 1:180484/251‑1 (MQ=255) atCACGTGGAGTCAGCTGTATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAAACATTTTCGCCATCATCTGGAGCTGTGA‑CTGAACCCTCAACAATCACCGTTGCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCAGTGCTATGCAACCGGCAAGTAGTGTCGGTTTGGTGATGGCTTGATATTGATTATCCCTGTTAAATTGTGTTGAAAGCATTTGAAATCTCTTGGTTTAtg < 2:289451/251‑1 (MQ=255) ggtACGCTGTTATCATTTTCGCCATCATCTTGAGCTGTGA‑CTGAACCCTCAACAATCTCCGGTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCAGTGCTATGCAACCGGCAAGTATTGACGGTTTGGTTATGGCTTGATATTGATGATCCCTGGTAAATTGTGTTGAAAGCATTTGAAATCTCTTGGGTTATGTTGTCGGCAGGCTCATTCCGGAGGAGGGTGATGATCGATtata < 2:360083/249‑1 (MQ=255) aTCATTTGCGACATCATCTGGAGCT‑TGGACTGACCCCTCAAGAATCACCGGTTCTTCAGTGGCGGGTGCAGCAAAAGCGACATAAGGTAATAGTGCCAGTGCTATGCAAGCGTCAAGTAGTGACGGTTTGGTTATGGCTTGATATTGATTTTCCCTGTTAAATTGTGTTGAAAGGATTTGAAAGCTCTTGTGTTATGGTGTCGTCAGGCTCATGCCGGAGGAGGGTGATGAGCGATTATATGTAGTGTGCg < 2:359562/251‑1 (MQ=255) tttCGCCATCATCTGGAGCTGTGA‑CTTAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCATTGCTATGCAACCGGCAAGTAGTTACGTTTTGGTGATGGCTTGATATTGATTATCCCTGTTAAATTGTGTTGAAAGCATTTGAAATCTCTTGGTTTATGTTGTCGTCAGGCTCATGCCGGAGGATGGTGATGAGCGATTATATTTAGTGTGCGaat < 1:12226/249‑1 (MQ=255) | ATATAGTTATCGATCTGGAATCCGCGGGAATAATAAAGAGCACGATCGGAATCCGCCTGACTTTTGCTGATCCCCAGCGTGTT‑TTCCATCACTTCGCCCAGCGTTTGTAACTGCTGATCTTCCATCCGCTGCTGGCTAACAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGG‑CTGAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCAGTGCTATGCAACCGGCAAGTAGTGACGGTTTGGTGATGGCTTGATATTGATTATCCCTGTTAAATTGTGTTGAAAGCATTTGAAATCTCTTGGTTTATGTTGTCGTCAGGCTCATGCCGGAGGAGGGTGATGAGCGATTATATTTAGTGTGCGAAT > NC_000913/1161160‑1161628 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |