| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,146,384 | A→G | V71A (GTA→GCA) | yceF ← | m(7)GTP pyrophosphatase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,146,384 | 0 | A | G | 96.3% | 70.8 / ‑4.3 | 27 | V71A (GTA→GCA) | yceF | m(7)GTP pyrophosphatase |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (12/14); total (12/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.52e-01 | |||||||||||
CCCGCGCAGTGCAGGGGATGCTCTTTACGCACGTAATTATCAATCTCCGCCTCGCTCAGGTGACGGAAATGGACGTCAAAAGGCTCCACTTCTGTTTGCAGATGCCCATTCGCCGAATTAAACAACGCCAGTCCAGTATAGAAGGTGACGATATTGCCGCTGGCTTTGCGTAATTGCAGACGGGCATTTTCTTCCGTTAACG‑GTTTACCGGTGATTTCGCCATCAAGAACACATACCTGGTCTGAACCAATAATTAAATGATCCGGATAACGTGACGCCAGAGATTGCGCTTTTTCTTGTGCCAGTCGAAGCACCAACTGTCGCGGTGATTCGTCGCTGCGTGGGGTTTCGTCGACCTCTGGTGCTGCACATTCAAAAGAGATTTGCAGTTTTTCCAGAAGAGCGCGACGCCATGGCGAGGTGGAGGCTAAAATAAGTTTAGGCATATTTTTTTCCATCAGATATAGCGTATTG > NC_000913/1146150‑1146623 | cccGCGCAGTGCAGGGGATGCTCTTTACGCACGTAATTATCAATCTCCGCCTCGCTCAGGTGACGGAAATGGACGTCAAAAGGCTCCACTTCTGTTTGCAGATGCCCATTCGCCGAATTAAACAACGCCAGTCCAGTATAGAAGGTGACGCTATTGCCGCTGGCTTTGCGTAATTGCAGACGGGCATTTTCTTCCGTTAACG‑GTTTACCGGTGATTTCGCCATCAAGAACACATGCCTGGTCTGACCCaat > 2:143955/1‑251 (MQ=255) cgcgCAGTGCAGGGGATGCTCTTTACGCACGTAATTATCAATCTCCGCCTCGCTCAGGTGACGGAAATGGACGTCAAAAGGCTCCACTTCTGTTTGCAGATGCCCATTCGCCGAATTAAACAACGCCAGTCCAGTATAGAAGGTGACGATATTGCCGCTGGCTTTGCGTAATTGCAGACGGGCATTTTCTTCCGTTAACG‑GTTTACCGGTGAGTTCGCCATCAAGAACACATGCCTGGTCTGAACCaataa < 1:332050/251‑1 (MQ=255) aGTGCAGGGGATGCTCTTTACGCACGTAATTATCAATCTCCGCCTCGCTCAGGTGACGGAAATGGACGTCAAAAGGCTCCACTTCTGTTTGCAGATGCCCATTCGCCGAATTAAACAACGCCAGTCCAGTATAGAAGGTGACGATATTGCCGCTGGCTTTGCGTAATTGCAGACGGGCATTTTCTTCCGTTAACG‑GTTTACCGGTGATTTCGCCATCAAGAACACATGCCTGGTCTGAACCAATAATTaa > 2:133720/1‑250 (MQ=255) aGTGCAGGGGATGCTCTTTACGCACGTAATTATCAATCTCCGCCTCGCTCAGGTGACGGAAATGGACGTCAAAAGGCTCCACTTCTGTTTGCAGATGCCCATTCGCCGAATTAAACAACGCCAGTACAGTATAGAAGGTGACGATATTGCCGCTGGCTTTGCGTAATTGCAGACGGGCATTTTCTTCCGTTAACG‑GTTTACCGGTGATTTCGCCATCAAGAAGAAATGCCTGGTCTGAACCAATAATTaa > 1:340911/1‑250 (MQ=255) gggtgatctTTACTCTCGTAATTATAGATCTCCTCCTCGGTCAGTGGAATGAAAGGGACTTCATAAGGCTCCACTTCTGGTTGCGGATGCTCATGCGCAGAATTAACCAACGCCAGGCTAGTATAGAAGGTGACGATATTGCCGCTGGCTTTGCGTAATTGCATACGGGCATTTTCTTCCGTTAACG‑GTTTACCAGTGATTTCGCCAGCAAGAACACAGGCCTGGTCTGAGCCAATAACTAAATGTTCCgg < 2:149274/245‑1 (MQ=255) cAGGTGACGGAAATGGACGTCAAAAGGCTCCACTTCTGTTTGCAGATGCCCATTCGCCGAATTAAACAACGCCAGTCCAGTATAGAAGGTGACGATATTGCCGCTGGCTTTGCGTAATTGCAGACGGGCATTTTCTTCCGTTAACG‑GTTTACCGGTGATTTCGCCATCCAGAACACATGCCTGGTCTGAACCaat > 2:103690/1‑195 (MQ=255) cAGGTGACGGAAATGGACGTCAAAAGGCTCCACTTCTGTTTGCAGATGCCCATTCGCCGAATTAAACAACGCCAGTCCAGTATAGAAGGTGACGATATTGCCGCTGGCTTTGCGTAATTGCAGACGGGCATTTTCTTCCGTTAACG‑GTTTACCGGTGATTTCGCCATCAAGAACACATGCCTGGTCTGAACCaat < 1:103690/195‑1 (MQ=255) aGGCTCCACGTATGTTTTCAGATGCCCATCCTACGAATTAAACAACGTCAGTCCAGTCTAGAATGTGTCGATATTGCCGCGTGCTTTGCGTAATTGCAGACGGGCATTTTCTTCCGTTAACG‑GTTTACCGGTGATTTCGCCAGCAAGAACACATGCCTGGTCTTATCCAATAATTAAATGATCCGGATAACGTGACGCCAGAGATTGCTCGTTCTCTTGTGCCAGTCGAAGCACCAACTGGCGTGGTGAtt < 2:298363/251‑1 (MQ=255) tCCACTTCTGTTTGCAGCTACCCATTCGCCGAATTCAACAACGCCAGTCCAGTATAGAAGGTGACGCTATTGCCGCTGGCTTCGCGTAATTCCAGACGGGCATTTTCTTCCGTAAACG‑GTTTACCGGTGATTTAGCCATCAAGAACACATGCCTGGACTGAACCACTAATTAAATGATCCGGATAACGTAACGCCagagtt > 2:322506/1‑199 (MQ=255) tCCACTTCTGTTTGCAGATGCCCATTCGCCGAATTAAACAACGCCAGTCCAGTATAGAAGGTGACGATATTGCCGCTGGCTTTGCGTAATTGCAGACGGGCATTTTCTTCCGTTAACG‑GTTTACCGGTGATTTCGCCATCAAGACCACATGCCTGGTCTTAACCAATAATTAAATGATCCGGATAACGTGACGCCAGAGAt < 1:322506/201‑1 (MQ=255) ccACTTCTGTTAGCAGATGCCCATTCGCCGCATTAAACGACGCCAGTCCAGTATAGAAGGTGACGATATTGCCGCTGGCTTTGCGTACTTGCAACCGGGCATTTTCTTCCGTTAACG‑GTTTAACGGCGATTTCGCCATCAAGGACACGTGCCAGGTCTGCACCAATAATTAAATGATCCGGATAACGGGACGCCCACGATTGCGCTTTTACTTGTGCCAGTAGAAGCACCAACTGGCGGGGTGAtttgt > 2:57156/1‑246 (MQ=255) gTTTGCAGATGCCCATTCGCCGAATTAAACAACGCCAGTCCAGTATAGAAGGTGACGATATTGCCGCTGGCTTTGCGTAATTGCAGACGGGCATTTTCTTCCGTTAACG‑GTTTACCGGTGATTTCGCCATCAAGAACACATGCCTGGTCTGAACCAATAATTAAATGATCCGGATAACGTGACGCCAGAGATTGCGCTTTTTCTTGTGCCAGTCGAAGCACCAACTGTCGCGGTGATTCGTCGCTGCg < 1:22517/248‑1 (MQ=255) cgccatgccagtATTGAAGGTGACGATATTTCCGCTGGATTTGCGTAATTGCAGACGGGCATTTTCTTCCGTTAACG‑GTTTACCGGTGATTTCGCCATCAAGAACACATGCCTGGTCTGAACCAATAATTAAATGATCCGGATAACGTGACGCCAGAGATTGCGCTTTTTCTTGTGCCAGTCGAAGCACCAACTGTCTCGGTGATTCGTCGCTGCGTGGGGTTTCGTCGACCTCTGGTGCTGCACATTCaa < 2:47404/244‑1 (MQ=255) atataaGGTTACGATATTGCCGCTGGCTTTGCGTAATTGCAGACGGGCATTTTCTTCCGTTAACGTGTTT‑CCGGTTATGTCGCCATCAAGAACGCATGCCTGGTCTGAACCAATAATTTAATAATCCGGAGAACGTGACGCCAGAGATTTCGCTTTTTCTTGTGCCATGCGAAGCACCATCGGTCGCGGTGATTCGTCGCTGCGTGGGGTTTCGTCGCCCTCTGGTGCTGCACATTCAAAAGAGATTTGc < 2:384669/246‑1 (MQ=255) gCCGCTGGCTTTGCGTAATTGCAGACGGGCATTTTCTTCCGTTAACG‑GTTTACCGCTGCTTTCGCCATCAAGAACACATGCCTGGTCTGAACCAATAATTAAATGATCCGGATAACGTGACGCCAGAGATTGCGCTTTTTCTTGTGCCAGTCGAAGCACCAACTGTCGCGGTGATTCGTCGCTGCGTGGGGTTTCGTCGACCTCTGGTGCTGCACATTCAAAAGAGATTTGCAGTTTTTCCAGAAGAgcgc > 1:38974/1‑251 (MQ=255) ccGCTGGCTTTGCGTAATTGCAGACGGGCATTTTCTTCCGTTAACG‑GTTTACCGGTGATTTCGCCATCAAGAACACATGCCTGGTCTGAACCAATAATTAAATGATCCGGATAACGTGACGCCAGAGATTGCGCTTTTTCTTGTGCCAGTCGAAGCACCAACTGTCGCGGTGATTCGTCGCTGCGTGGGGTTTCGTCGACCTCTGGTGCTGCACATTCAAAAGAGATTTGCAGTTTTTCCAGAAGAGcgcg < 1:195650/251‑1 (MQ=255) gTAATTGCAGACGGGCATTTTCTTCCGTTAACG‑GTTTACCGGTGATTTCGCCATCAAGAACACATGCCTGGTCTGAACCAATAATTAAATGATCCGGATAACGTGACGCCAGAGATTGCGCTTTTTCTTGTGCCAGTCGAAGCACCAACTGTCGCGGTGATTCGTCGCTGCGTGGGGTTTCGTCGACCTCTGGTGCTGCACATTCAAAAGAGATTTGCAGTTTTTCCAGAAGAGCGCGACGCCATGGCGAg < 1:57156/251‑1 (MQ=255) tttGCAGACGGGCATTATCTTCCGTAAACG‑GGTTACCGGAGCTTTCGCCATAAAGAACACATGCCTGGTCTGAACCAATAATTAAATGATACGGATAACGTGGCGCCAGAGATTGCGCTTTTTATTGTGCCAGTCGAAGCACCAACTGTCGCGGAGATTAGTCGATGCTTGGGGTTTCGTCGTCATCTGGTGCTGCACATTCAAAAGAGATTTGCAGTTTTTCAAGAAAAGCGCGACGCTATGGAGAGGTg > 2:24238/2‑251 (MQ=255) tGCAGACGGACATTTTCTTCCGTTAACG‑GTTTACCGGTGATTTCGCCATCAAGAACACATGCCTGGTCCGAACCAATAATTAAATGATCCGGATAACGTGACGCCAGAGATTGCGCTTTTTCTTGTGCCAGTCGAAGCACCAAc > 2:373896/1‑144 (MQ=255) aGACGGGCATTTTCTTCCGTTAACG‑GTTTACCGGTGATTTCGCCATCAAGAACACATGCCTGGTCTGAACCAATAATTAAATGATCCGGATAACGTGACGCCAGAGATTGCGCTTTTTCTTGTGCCAGTCGAAGCACCAACTGTCGCGGTGATTCGTCGCTGCGTGGGGTTTCGTCGACCTCTGGTGCTGCACATTCAAAAGAGATTTGCAGTTTTTCCAGCAGAGCGCGACGCCATGGCGAGGTGGAGGc > 1:274405/1‑251 (MQ=255) gACGGGCATTTTCTTCCGTTAACG‑GTTTACCGGTGATTTCGCCATCAAGAACACATACCTGGTCTGAACCAATAATTAAATGATCCGGACAACGTGACGCCAGAGATTGCGCTTTTTCTTGTGCCAGTCGAAGCACCAACTGTCGCGGTGATTCGTCGCTGCGTGGGGTTTCGTCGACCTCTGGTGCTGCACATTCAAAAGAGATTTGCAGTTTTTCCAGAAGAGCGCGACGCCATGGCGAGGTGGGGGCt < 1:112670/251‑1 (MQ=255) gggCATTTTCTTCCGTTAACG‑GTTTACCGGTGATTTCGCCATCAAGAACACATGCCTGGTCTGAACCAATAATTAAATGATCCGGATAACGTGACGCCAGAGATTGCGCTTTTTCTTGTGCCAGTCGAAGCACCAACTGTCGCGGTGATTCGTCGCTGCGTGGGGTTTCGTCGACCTCTGGTGCTGCACATTCAAAAGAGATTTGCAGTTTTTCCAGAAGAGCGCGACGCCATGGCGAGGTGGAGGCTaaa < 1:133720/251‑1 (MQ=255) aTTTTCTTCCGTTAACG‑GTTTACCGGTGATTTCGCCATCAAGAACACATGCCTGGTCTGAACCAATAATTAAATGATCCGGATAACGTGACGCCAGAGATTGCGCTTTTTCTTGTGCCAGTCGAAGCACCAACTGTCGCGGTGATTCGTCGCTGCGTGGGGTTTCGTCGACCTCTGGTGCTGCACATTCAAAAGAGATTTGCAGTTTTTCCAGAAGAGCGCGACGCCATGGCGAGGTGGAGGCTAAAATaa < 1:143955/251‑1 (MQ=255) tcCGTTAACT‑GTTTACCGGTGATTTCGCCATCAAGAACACATGCCTGGTCTGAACCAATAATTAAATGATCCGGATAACGTGACGCCAGAGATTGCGCTTTTTCTTGTGCCAGTCGAAGCACCAACTGTCGCGGTGATTCGTCGCTGCGTGGGGTTTCGTCGACCTCTGGTGCTGCACATTCAAAAGAGATTTGCAGTTTTTCCAGAATAGCGCGACGCCATGGCGAGGTGGAGGCTAAAATAAGTTTAg < 1:327733/250‑1 (MQ=255) ttAACG‑GTTTACCGGTGATTTCGCCATCAAGAACACATGCCTGGTCTGAACCAATAATTAAATGATCCGGATAACGTGACGCCAGAGATTGCGCTTTTTCTTGTGCCAGTCGAAGCACCAACTGTCGCGGTGATTCGTCGCTGCGTGGGGTTTCGTCGACCTCTGGTGCTGCACATTCAAAAGAGATTTGCAGTTTTTCCAGAAGAGCGCGACGCCATGGCGAGGTGGAGGCTAAAATAAGTTTAGGCatc > 1:349604/1‑250 (MQ=255) tCAAGAACACATGCCTGGTCTGAACCAATAATTAAATGATCCGGATAACGTGACGCCAGAGATTGCGCTTTTTCTTGTGCCAGTCGAAGCACCAACTGTCGCGGTGATTCGTCGCTGCGTGGGGTTTCGTCGACCTCTGGTGCTGCACATTCAAAAGAGATTTGCAGTTTTTCCAGAAGAGCGCGACGCCATGGCGAGGTGGAGGCTAAATTAAGTTTAGGCTTATTTTTTTCCATCAGATATAGCGTAtt > 2:79652/1‑251 (MQ=255) cAAGAACTCATGCCTGGTCTGAACCAATAATTAAATGATCCGGATAACGTGACGCCAGAGATTGCGCTTTTTCTTGTGCCAGTCGAAGCACCAACTGTCGCGGTGATTCGTCGCTGCGTGGGGTTTCGTCGACCTCTGGTGCTGCACATTCAAAAGAGATTTGCAGTTTTTCCAGAAGAGCGCGACGCCATGGCGAGGTGGAGGCTAAAATAAGTTTAGGCATATTTTTTTCCATCAGATATAGCGTATtg < 1:112423/251‑1 (MQ=255) | CCCGCGCAGTGCAGGGGATGCTCTTTACGCACGTAATTATCAATCTCCGCCTCGCTCAGGTGACGGAAATGGACGTCAAAAGGCTCCACTTCTGTTTGCAGATGCCCATTCGCCGAATTAAACAACGCCAGTCCAGTATAGAAGGTGACGATATTGCCGCTGGCTTTGCGTAATTGCAGACGGGCATTTTCTTCCGTTAACG‑GTTTACCGGTGATTTCGCCATCAAGAACACATACCTGGTCTGAACCAATAATTAAATGATCCGGATAACGTGACGCCAGAGATTGCGCTTTTTCTTGTGCCAGTCGAAGCACCAACTGTCGCGGTGATTCGTCGCTGCGTGGGGTTTCGTCGACCTCTGGTGCTGCACATTCAAAAGAGATTTGCAGTTTTTCCAGAAGAGCGCGACGCCATGGCGAGGTGGAGGCTAAAATAAGTTTAGGCATATTTTTTTCCATCAGATATAGCGTATTG > NC_000913/1146150‑1146623 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |