| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,138,533 | C→T | G52G (GGC→GGT) | flgK → | flagellar hook‑filament junction protein 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,138,533 | 0 | C | T | 94.4% | 41.8 / ‑4.0 | 18 | G52G (GGC→GGT) | flgK | flagellar hook‑filament junction protein 1 |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (10/7); total (10/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.89e-01 | |||||||||||
GAACATTGATAATCTGTTCTGAATAACTCAAGTCCGGCGGGTCGCTGCCGATAATACTCTGTAATTGAAGGCTTATAAGGAACCTCCATGTCCAGCTTGATTAATAACGCCATGAGCGGACTGAACGCGGCCCAGGCGGCGTTAAATACGGCAAGTAATAATATCTCCAGCTATAACGTTGCC‑GGATATACCCGCCAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCT‑ACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGGCGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAAC‑GCTGGTGAGTAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGG > NC_000913/1138291‑1138782 | gAACATTGATAATCTGTTCTGAATAACTCAAGTCCGGCGGGTCGCTGCCGATAATACTCTGTAATTGAAGGCTTATAAGGAACCTCCATGTCCAGCTTGATTAATAACGCCATGAGCGGACTGAACGCGGCCCAGGCGGCGTTAAATACGGCAAGTAATAATATCTCCAGCTATAACGTTGCC‑GGATATACCCGCCAAACAACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGTTGGGGTgg > 1:372512/1‑251 (MQ=255) gATAATCTGTTCCGAATAACTCAAGTCCGGCGGGCCGCTGCCGATAATACTCTGTAATTGAAGGCTTATAAGGAACCTCCATGTCCAGCTTGATTAATAACGCCATGAGCGGACTGAACACGGCCCAGGCGGCGTTAAATACGGCCAGTAATAATATCTCCAGCTATAACGTTGCC‑GGATATACCCGCCAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGCCGCTGGCGGTTGGGTTGGCacgagg > 1:289535/1‑246 (MQ=255) cTCAAGTCCGGCGGGTCGCTGCCGATAATACTCTGTAATTGAAGGCTTATAAGGAACCTCCATGTCCAGCTTGATTAATAACGCCATGAGCGGACTGAACGCGGCCCAGGCGGCGTTAAATACGGCAAGTAATAATATCTCCAGCTATAACGTTGCC‑GGATATACCCGCCAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGTTGGGTTGGCAATGGGGTCT‑AAGTTTCTGGTGTGc > 1:99036/1‑251 (MQ=255) aataCTCTGTAATTGAAGGCTTATAAGGAACCTCCATGTCCAGCTTGATTAATAACGCCATGAGCGGACTGAACGCGGCCCAGGCGGCGTTAAATACGGCAAGTAATAATATCTCCAGCTATAACGTTGCC‑GGATATACCCGCCAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGTTTGGGTGGCAATGGGGGCTTACGTT‑CTGGTGTTCAGCGTGAGTATGACGCGTTTATTacc > 2:2904/1‑251 (MQ=255) ataAGGAACCTCCATGTCCAGCTTGATTAATAACGCCATGAGCGGACTGAACGCGGCCCAGGCGGCGTTAAATACGGCAAGTAATAATATCTCCAGCTATAACGTTGCC‑GGATATCCCCGCCAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGTTGGGTTGGCAATGGTGTCT‑ACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGGCGCAg < 1:72624/250‑1 (MQ=255) atacccgcagaggcgtaCTGAACGCGGCCCAGGGGGTGTAAAATCTGTAAAGTAAAAACATCTCCAGCAATAACGTTGCC‑GGATATCCCCGCCAAACCCCTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGTTGGGTTGGCAATGGTGTCT‑ACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGGCGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTAt < 2:99036/235‑1 (MQ=255) ataaCGCCATGAGCGGACTGAACGCGGCCCAGGCGGCGTTAAATACGGCAAGTAATAATATCCCCAGCTATAACGTTGCC‑GGATATACCCGCCAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGTTGGGTTGGCAATGGTGTCT‑ACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGGCGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTAt < 1:344265/251‑1 (MQ=255) ccATGAGCGGACTGAACGCGGCCCAGGCGGCGTTAAATACGTCAAGTAATAATATCTCCAGCTATAACGTTGCC‑GGTTATCCCCGCCAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGTTGGGTTGGCAATGGTGTCT‑ACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGGCGCAGACGCAAAGTAGCGGTCTTACTGCCCGCTATGAGCAg < 1:140481/251‑1 (MQ=255) cccAGGCGACGTTATATAAGCCAAGTAATAATATCTACAGCTATCACGCTGCC‑GGATATACCCGCCAAACCACTATTATGGCTCAGGCCAATAGCACGAGGGGAGCCGGCGGTTGGGTTAGCCATGGCGTCT‑AAGTTTTTGGCGGGGGGCAGGAGTATGGTGGTTTTATTCCCAACAAAGTACGTACGGCGTCGACGCAAAGACGCGGTCTGAATGCCCACTATGaaaaggagtacgaaatccgaaaatt > 2:230919/1‑226 (MQ=255) tACGGCAAGTAATAATATCTCCAGCTATAACGTTGCC‑GGATATACCCGCCAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGTTGGGTTGGCAATGGTGTCT‑ACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGGCGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCCGATGTCGAAAATAGACAATATGCTCTCCACCAGTACct > 1:62073/1‑251 (MQ=255) atccccAGCTATA‑CGTCGCCCGGCTATCCCCGCCAACCCGCTATTATGGCGCAGGCCTATAGCACGTTGGGCGCTGGCGGTTGGGTTGGCAATGGTGTCT‑ACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGGCGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAAcaca < 2:106816/247‑1 (MQ=255) cTATAACGTTGCC‑GGATATACCCGCCAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGTTGGGTTGGCCATGGGGTCT‑CAGTTTCCGGGGTACCGCGTGAGAATGCTGCGGTTATTACCAACCAGTTACGTTCGGCGCAGTAGCAAAGTAGCGGTCTGACTGCCCCCCATCAGTAGAAGGAGAACATCGCAAATATGCTCTCCACCAGTACCTCTTCGcctgcacctaacatgcc > 2:87475/1‑233 (MQ=255) cACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGTTGGGTTGGCAATTGTGTCT‑ACGTTTATGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGGCGCAGACGCCAAGTAGCGGTCTGACTACCCGCTATGAGCAGAAGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGATGGCAACCCAGATGCCGGATTTCTTTACCAGCCTTCCAAC‑GCTGGTgg > 1:255908/1‑250 (MQ=255) agtatGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGTTGGGTTGGCAATGGTGTCT‑ACGGTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGGCGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAAC‑GCTGGTGAGTa < 1:227034/248‑1 (MQ=255) cgcAGGCCAATAGCACGTTGGGCGCTGGCGGTTGGGTTGGTAATGGTATCT‑TCGTTTCTGGGGTGCAGCGTGAGTATTATTCGTTTTTTACCAAACAGTTGCGTTCGGCTCAGTCGCGAAGTAGCGTGCTGAATGCCCGCTATAAGCAGATGTCGAAAATCGAAAAACTGCTCTCAACCAGTACCACTTCGCGTGCAACACAAATGCAGGAATTCTTTACACGCCTG‑AAACAGCTGGGGAGTAAAGCggt > 1:131633/1‑249 (MQ=255) cAGGCCAATAGCACGTTGGGCGCTGGCGGTTGGGTTGGCAATGGTGTCT‑ACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGGCGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAAC‑GCTGGTGAGTAACGCGGAAGa < 1:218936/251‑1 (MQ=255) cAGGCCAATAGCACGTTGGGCGCTGGCGGTTGGGTTGGCAATGGTGTCT‑ACGTTTCTGGTGGGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGGCGCAGACGCCAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGTTGCAGGATTTCTTCACCAGCCTGCAAAC‑GCTGGGTAGTAACGCGGa > 1:284422/1‑248 (MQ=255) ggCGCTGGCGGCTGGGTTGGCAATGGTGTCT‑ACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGGCGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCGCCAGCCTGCAAAC‑GCTGGTGAGTAACGCGGAAGACCCGGCAGCGCGCCAGgc < 1:82904/251‑1 (MQ=255) cTGGGTTGGCAATGGTGTCT‑ACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGGCGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGTTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAAC‑GCTGGTGAGTAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTggg > 1:3425/1‑250 (MQ=255) | GAACATTGATAATCTGTTCTGAATAACTCAAGTCCGGCGGGTCGCTGCCGATAATACTCTGTAATTGAAGGCTTATAAGGAACCTCCATGTCCAGCTTGATTAATAACGCCATGAGCGGACTGAACGCGGCCCAGGCGGCGTTAAATACGGCAAGTAATAATATCTCCAGCTATAACGTTGCC‑GGATATACCCGCCAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCT‑ACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGGCGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAAC‑GCTGGTGAGTAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGG > NC_000913/1138291‑1138782 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |