| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,138,152 | C→T | T261I (ACC→ATC) | flgJ → | putative peptidoglycan hydrolase FlgJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,138,152 | 0 | C | T | 90.9% | 52.4 / ‑3.0 | 22 | T261I (ACC→ATC) | flgJ | putative peptidoglycan hydrolase FlgJ |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (8/12); total (9/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.97e-01 | |||||||||||
GGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGGTGTCAAAGCCTCTGGCAACTGGAAAGGGCCAGTTACTGAAATCACCACGACTGAATATGAAAACGGCGAAGCGAAGAAAGTAAAAGCGAAGTTTCGCGTCTACAGCTCGT‑ATCTGGAAGCCTTGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAACCTACAGTATGAACATTGATAATCTGTTCTGAATAACTCAAGTCCGGCGGGTCGCTGCCGATAATACTCTGTAATTGAAGGCTTATAAGGAACCTCCATGTCCAGCTTGATTAAT > NC_000913/1137917‑1138395 | gtttGGGGGAAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCGGTTTGGTGTCAAAGCCTCTGGCAACTGGAAAGGGCCAGGTACTGAAATCACCACGACTGAATATGAAAACGGCGAAGCGAAGAAAGTAAAAGCGAAGTTTCGCGTCTACAGCTCGT‑ATCGGGAAGCCTTGTCGGATGACGTTGGGCGGTTAACGCGTAACCCGCGCTCCGCCGCCGTGACGATCGCCGCGAGTGc < 1:41977/246‑1 (MQ=255) gCGAGCCGAGCTATAACCTGTTTGGTGTCAAAGACTCATGCAACTGGAAAGGGCCAGTTACTGAAATCCCCACGACTGAATATGAAAACGGCGAAGCGAAGAAAGTAAAAGCGAAGTTTCGCGTCTACAGCTCGT‑ATCTGGAAGCCTTGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGATCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTAt < 1:360951/251‑1 (MQ=255) aaCCTGTTTGGTGTCAAAGCCTCTGGCAACTGGAAAGGGCCAGTTACTGAAATCACCACGACTGAATATGAAAACGGCGAAGCGAAGAAAGTAAAAGCGAAGTTTCGCGTCTACAGCTCGT‑ATCTGGAAGCCTTGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGATCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTc < 1:66424/250‑1 (MQ=255) ccTGGTTGGTTTCAAAGCCCCTGGCAACTGTAAAGTGCCAGTTATTTAAATCACCACGACTGAATATGAAAACGGCGAAGCTAAGAAAGTAAAAGCTAATTTTCGCGTCTACTGCTCGT‑ATCTGGACGCCTTCTCGGATTACGTTGTGCTGTTAACGCTTAACCCGCGCTACGCCGCCGTGACGATCGCCGCGAGTGCGGAACAGGGGTCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACt < 1:123919/251‑1 (MQ=255) tcaaGCCTTTGGGAACTGGAAATGGCCATTGACTGAAAAGCCCGTGTCTGAATTTGAAAACGGCGGAGAGAAGAAAGTAAAAGCGAAGTTTTGCGTCTACAGCGCGT‑ATCTGGAGTCCTTGTCGGGTTACGGTGGGCTGTTAACGCGTACCCCGCGCCGCGCCGCCGTGACGATCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCaaa < 2:145207/248‑1 (MQ=255) cAAAGCCTCTGGCAACTGGAAAGGGCCAGTTACTGAAATCACCACGACTGAATATGAAAACGGCGAAGCGAAGAAAGTAAAAGCGAAGTTTCGCGTCTACAGCTCGT‑ATCTGGAAGCCTTGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGATCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAAc < 1:272965/251‑1 (MQ=255) cAAAGCCTCTGGCAACTGGAAAGGGCCAGTTACTGAAATCACAACGACTGAATATGAAAACGACGAAGCGAAGAAAGTAAAAGCGAAGTTTCGCGTCTACAGCACGT‑ATCTGGAAGCCTTGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGATCGCCGCGAGTGCGGGACAGGGGGCGCAGGCCCTACAGGAAGCGGGCTATGCCACCGCTCCTCACTATGCCCGCAAAc > 2:215692/1‑251 (MQ=255) ggCAACTGGAAAGGGCCAGTTACTGAAATCACCACGACTGAATATGAAAACGGCGAAGCGAAGAAAGTAAAAGCGAAGTTTCGCGTCTACAGCTCGT‑ATCTGGAAGCCTTGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGATCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACa < 1:314794/250‑1 (MQ=255) ccAGTTACTGAAATCACCACGACTGAATATGAAAACGGCGAAGCGAAGAAAGTAAAAGCGAAGTTTCGCGTCTACAGCTCGT‑ATCTGGAAGCCTTGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGATCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGa > 1:232653/1‑250 (MQ=255) aGTTACTGAAATCACCACGACTGAATATGAAAACGGCGAAGCGAAGAAAGTAAAAGCGAAGTTTCGCGTCTACAGCTCGT‑ATCTGGAAGCCTTGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGATCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGCCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTAACCAACATGATTCAGCAGATGAAAt > 1:161170/1‑251 (MQ=255) aaaCGGCGAAGCGAAGCAAGTAAAAGCGAAGTTTCGCGTCTACAGCTCGT‑ATCTGGAAGCCTTGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGATCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCAACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAACCTAc > 1:331591/1‑250 (MQ=255) aaaCGGCGAAGCGAAGAAAGTAAAAGCGAAGTTGCGCGTCTACAGCTCGT‑ATCTGGAAGCCTTGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGATCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAACCTACa < 1:306508/251‑1 (MQ=255) cgaagcgaagAAAGTAAAAGCGAAGTTTCGCGTCTACAGCTCGT‑ATCTGGAAGCCTTGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGAGCTACGCCGCCGTGACGATCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCCCCGATCCTCACTATGCCCGCAAACTCACAAACATGTATCAGCAGATGAAATCGAATAGCACCACGGTGAGCAAAACCTCAAGTATg > 2:218936/1‑250 (MQ=255) ggaagaaAGTAAAAACGATGTATCGCGTCCACAGCTCGTTAT‑TGGAGGCCTTGTCGGTTTCCGTTGGGCTGTTAACGTGAACCCCGCACTGCGCCGCCGTGATGATCGCCGCGATTGCGTAACAGGGGGCGCAGGCCCTACAGGACGCGGGTTATGCCACCGATCCTCACTATGCCCGCAAACTCTCTAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAACCTACAGTATGAACAta < 2:331440/250‑2 (MQ=255) gaagaaAGTAAAAGCGAAGTTTCGCGTCTACAGCTCGT‑ATCTGGAAGCCTTGTCGGCTTACGTTGGGCTGTTAACGCTCAAACCGCGCTACGCCGCCGTGACGACAGCCGCGAGTGCGGAACCGGGAGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAAATCACCAACATGATTCAGCAGATGAAATCGATAAGCGTCAAGGTGAGCAAAACCTACAGAATGAACAttt > 1:362253/1‑250 (MQ=255) aagaaAGTAAAATCTAAGTTGGTCGCCTACCGCTAGT‑ATCTTGAAGCGTTGTCGTATTCCGTTGGGCTGTGAACGCGTAACCCGCGCTACGCCGCCGTGACGCTCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATTCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAACCTACAGTATGAACATTGa < 2:232653/251‑1 (MQ=255) gAAGTTTCGCGTCTACAGCTCGT‑ATCTGGAAGCCTTGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGATCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGCTACGCGACAAGGTAAGCAAAACCTACAGTATGAACATTGATAATCTGTTCTGa > 1:281280/1‑250 (MQ=255) aaGTTTCGCGTCTACAGCTCGT‑ATCTGGAAGCCTTGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAACCTACAGTATGAACATTGATAATCTGTTCTGAAt < 1:181535/251‑1 (MQ=255) gATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGATCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAACCTACAGTATGAACATTGATAATCTGTTCTGAATAACTCAAGTCCGGCGGGTCGCTGCCGATAATACTCTGt > 1:90252/1‑250 (MQ=255) gcgcTACGCCGCCGTGACGATCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCTACAAGGTGAGCAAAACCTACATTATGAACATTGATAATCTGTTCTGAATAACTCAAGTCCGGCGGGTCGCTGCCGATAATACTCTGTAATTGAAGGCTTATAAGGAACCTCCATGTc < 1:243681/251‑1 (MQ=255) cgccgTGACGATCGCCGCGAGTGCGGAACAGGGGGCGCCGGCCCTACAGGACGCGGGCTATGCCACCGCTCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAACCTACAGTATGAACATTGATAATCTGTTCTGAATAACTCCAGTCCGGCGGGACGCTGCCGATAATACTCTGTAATTGAAGGCTTCTCAGGAACCTCCATGTCCAGCTTGAt > 1:40777/1‑251 (MQ=255) gTGACGATCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAACCTACAGTATGAACATTGATAATCTGTTCTGAATAACTCAAGTCCGGCGGGTCGCTGCCGATAATACTCTGTAATTGAAGGCTTATAAGGAACCTCCATGTCCAGCTTGATtaat < 1:119818/251‑1 (MQ=255) | GGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGGTGTCAAAGCCTCTGGCAACTGGAAAGGGCCAGTTACTGAAATCACCACGACTGAATATGAAAACGGCGAAGCGAAGAAAGTAAAAGCGAAGTTTCGCGTCTACAGCTCGT‑ATCTGGAAGCCTTGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAACCTACAGTATGAACATTGATAATCTGTTCTGAATAACTCAAGTCCGGCGGGTCGCTGCCGATAATACTCTGTAATTGAAGGCTTATAAGGAACCTCCATGTCCAGCTTGATTAAT > NC_000913/1137917‑1138395 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |